Wall clock time and date at job start Mon Mar 30 2020 03:41:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34858 * 126.28925 * 2 1 4 4 N 1.36340 * 108.21612 * 179.97438 * 3 2 1 5 5 C 1.46496 * 125.63437 * 179.97438 * 4 3 2 6 6 C 1.53006 * 109.46995 * 90.00435 * 5 4 3 7 7 C 1.52997 * 109.47127 * 180.02562 * 6 5 4 8 8 C 1.52996 * 109.47131 * 180.02562 * 7 6 5 9 9 C 1.50698 * 109.47188 * 180.02562 * 8 7 6 10 10 H 1.07998 * 120.00218 * 359.97438 * 9 8 7 11 11 C 1.37885 * 119.99966 * 180.02562 * 9 8 7 12 12 N 1.31505 * 119.99945 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 119.99899 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47418 * 89.99714 * 13 11 9 15 15 H 1.48498 * 109.47091 * 209.99774 * 13 11 9 16 16 H 1.48501 * 109.47296 * 329.99817 * 13 11 9 17 17 C 1.36344 * 108.73015 * 0.26672 * 4 3 2 18 18 C 1.34851 * 108.21591 * 359.56415 * 17 4 3 19 19 C 1.50701 * 126.29023 * 180.15750 * 18 17 4 20 20 H 1.09000 * 109.46862 * 89.97083 * 1 2 3 21 21 H 1.08998 * 109.47140 * 209.97029 * 1 2 3 22 22 H 1.08997 * 109.47114 * 329.97252 * 1 2 3 23 23 H 1.07998 * 125.88971 * 0.03911 * 3 2 1 24 24 H 1.09001 * 109.47464 * 330.00696 * 5 4 3 25 25 H 1.09001 * 109.47459 * 210.00411 * 5 4 3 26 26 H 1.09001 * 109.47002 * 299.99701 * 6 5 4 27 27 H 1.08993 * 109.46955 * 60.00138 * 6 5 4 28 28 H 1.09001 * 109.47289 * 299.99953 * 7 6 5 29 29 H 1.09004 * 109.47261 * 59.99697 * 7 6 5 30 30 H 1.09001 * 109.46997 * 299.99574 * 8 7 6 31 31 H 1.08992 * 109.47534 * 59.99520 * 8 7 6 32 32 H 0.97007 * 119.99787 * 180.02562 * 12 11 9 33 33 H 1.07993 * 125.88986 * 179.69799 * 17 4 3 34 34 H 1.08998 * 109.47510 * 270.31432 * 19 18 17 35 35 H 1.08997 * 109.47400 * 30.32111 * 19 18 17 36 36 H 1.09001 * 109.46817 * 150.31149 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3052 1.0870 0.0000 4 7 3.6013 0.6640 0.0006 5 6 4.7821 1.5312 0.0002 6 6 5.1929 1.8339 1.4427 7 6 6.4257 2.7401 1.4424 8 6 6.8368 3.0423 2.8847 9 6 8.0507 3.9353 2.8844 10 1 8.4857 4.2550 1.9491 11 6 8.6066 4.3434 4.0784 12 7 8.0773 3.9538 5.2174 13 14 10.1117 5.4498 4.0780 14 1 9.6814 6.8711 4.0784 15 1 10.9256 5.1788 5.2902 16 1 10.9248 5.1791 2.8652 17 6 3.6170 -0.6993 -0.0051 18 6 2.3410 -1.1355 0.0006 19 6 1.8899 -2.5735 0.0007 20 1 -0.3633 0.0005 -1.0277 21 1 -0.3633 -0.8902 0.5134 22 1 -0.3633 0.8897 0.5142 23 1 1.9747 2.1152 0.0006 24 1 4.5483 2.4633 -0.5142 25 1 5.6019 1.0286 -0.5131 26 1 4.3731 2.3366 1.9560 27 1 5.4267 0.9019 1.9571 28 1 7.2456 2.2379 0.9289 29 1 6.1914 3.6721 0.9280 30 1 6.0171 3.5444 3.3986 31 1 7.0712 2.1102 3.3987 32 1 8.4682 4.2412 6.0574 33 1 4.4991 -1.3223 -0.0107 34 1 1.7815 -2.9204 -1.0269 35 1 2.6301 -3.1864 0.5149 36 1 0.9318 -2.6536 0.5143 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385237682.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:14 Heat of formation + Delta-G solvation = -3.236669 kcal Electronic energy + Delta-G solvation = -14242.072296 eV Core-core repulsion = 11918.130266 eV Total energy + Delta-G solvation = -2323.942029 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 221.148 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.10036 -37.12696 -35.26859 -33.76320 -31.87224 -30.89941 -28.02355 -27.18168 -25.65129 -23.25185 -21.89120 -20.87961 -19.81987 -18.47555 -17.48309 -16.50873 -16.32509 -15.80054 -14.76935 -14.72390 -14.58404 -13.98037 -13.96844 -13.92805 -13.52297 -13.35608 -13.12412 -12.88823 -12.83736 -12.56523 -12.33701 -12.28813 -12.14238 -11.94537 -11.48142 -11.38306 -11.14043 -10.58108 -9.07979 -8.86444 -8.22117 -6.34150 1.39042 1.40653 1.40890 1.51839 2.05428 2.14963 2.39781 3.11077 3.80144 3.97784 4.17782 4.24056 4.33653 4.36212 4.48142 4.58580 4.64437 4.78085 4.79786 4.84222 4.92305 5.01493 5.05034 5.21436 5.21923 5.25672 5.27486 5.43480 5.50264 5.66013 5.71591 5.83100 6.21408 6.21670 6.44037 6.58919 6.83834 7.35819 8.89825 Molecular weight = 221.15amu Principal moments of inertia in cm(-1) A = 0.061146 B = 0.004066 C = 0.004056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 457.812497 B = 6883.926627 C = 6900.956111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.192 4.192 3 C -0.030 4.030 4 N -0.448 5.448 5 C 0.112 3.888 6 C -0.119 4.119 7 C -0.094 4.094 8 C 0.021 3.979 9 C -0.544 4.544 10 H 0.064 0.936 11 C -0.003 4.003 12 N -0.936 5.936 13 Si 0.967 3.033 14 H -0.272 1.272 15 H -0.283 1.283 16 H -0.261 1.261 17 C -0.030 4.030 18 C -0.192 4.192 19 C -0.072 4.072 20 H 0.065 0.935 21 H 0.064 0.936 22 H 0.061 0.939 23 H 0.170 0.830 24 H 0.103 0.897 25 H 0.103 0.897 26 H 0.051 0.949 27 H 0.051 0.949 28 H 0.060 0.940 29 H 0.060 0.940 30 H -0.013 1.013 31 H -0.013 1.013 32 H 0.263 0.737 33 H 0.170 0.830 34 H 0.065 0.935 35 H 0.061 0.939 36 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.313 -8.315 -12.540 18.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.198 4.198 3 C -0.160 4.160 4 N -0.123 5.123 5 C -0.009 4.009 6 C -0.158 4.158 7 C -0.132 4.132 8 C -0.016 4.016 9 C -0.582 4.582 10 H 0.082 0.918 11 C -0.201 4.201 12 N -0.576 5.576 13 Si 0.791 3.209 14 H -0.197 1.197 15 H -0.209 1.209 16 H -0.185 1.185 17 C -0.160 4.160 18 C -0.198 4.198 19 C -0.129 4.129 20 H 0.084 0.916 21 H 0.082 0.918 22 H 0.080 0.920 23 H 0.187 0.813 24 H 0.121 0.879 25 H 0.121 0.879 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.005 0.995 31 H 0.006 0.994 32 H 0.072 0.928 33 H 0.187 0.813 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -10.979 -8.076 -12.370 18.406 hybrid contribution 0.850 0.637 0.672 1.257 sum -10.129 -7.438 -11.698 17.169 Atomic orbital electron populations 1.20086 0.88992 1.02147 1.01706 1.19799 0.96604 0.92293 1.11130 1.21988 0.82751 0.99897 1.11407 1.44242 1.06332 1.06230 1.55446 1.21972 0.86326 0.95183 0.97378 1.21839 0.98144 0.99692 0.96077 1.21366 0.95906 0.98449 0.97496 1.19027 0.94839 0.94690 0.93062 1.21741 1.13315 1.30359 0.92813 0.91770 1.26040 1.00834 0.98003 0.95221 1.70110 1.42711 1.46747 0.98055 0.85417 0.78711 0.78796 0.77959 1.19721 1.20868 1.18461 1.21987 0.99312 0.83332 1.11410 1.19798 0.92428 0.96473 1.11125 1.20086 1.01075 0.90066 1.01705 0.91623 0.91753 0.91970 0.81297 0.87912 0.87906 0.93046 0.93046 0.92107 0.92080 0.99456 0.99437 0.92786 0.81291 0.91624 0.91968 0.91753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.43 10.22 71.24 0.73 -0.70 16 2 C -0.19 -4.98 6.14 -19.99 -0.12 -5.10 16 3 C -0.03 -0.81 11.35 83.22 0.94 0.13 16 4 N -0.45 -12.19 2.75 -524.47 -1.44 -13.63 16 5 C 0.11 2.84 6.09 86.38 0.53 3.36 16 6 C -0.12 -3.92 5.54 30.60 0.17 -3.75 16 7 C -0.09 -3.66 5.15 30.59 0.16 -3.51 16 8 C 0.02 1.11 4.97 29.85 0.15 1.26 16 9 C -0.54 -30.98 9.11 25.60 0.23 -30.75 16 10 H 0.06 3.45 7.74 -2.91 -0.02 3.43 16 11 C 0.00 -0.20 5.46 84.66 0.46 0.26 16 12 N -0.94 -57.73 13.29 21.45 0.28 -57.44 16 13 Si 0.97 44.16 29.54 68.60 2.03 46.19 16 14 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 15 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 16 H -0.26 -11.25 7.11 99.48 0.71 -10.55 16 17 C -0.03 -0.81 11.35 83.21 0.94 0.14 16 18 C -0.19 -4.97 6.14 -19.99 -0.12 -5.10 16 19 C -0.07 -1.43 10.22 71.24 0.73 -0.70 16 20 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 21 H 0.06 1.17 7.36 -2.39 -0.02 1.15 16 22 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 23 H 0.17 3.83 8.06 -2.91 -0.02 3.80 16 24 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 25 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 26 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 27 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 29 H 0.06 2.25 8.14 -2.38 -0.02 2.23 16 30 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 31 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 32 H 0.26 15.23 8.31 -92.70 -0.77 14.46 16 33 H 0.17 3.82 8.06 -2.91 -0.02 3.80 16 34 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.06 1.17 7.36 -2.39 -0.02 1.15 16 Total: -1.00 -66.55 303.20 6.68 -59.87 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: 1.01 Total: 9.45 kcal Atomic # 6 Polarization: -49.23 SS G_CDS: 4.80 Total: -44.44 kcal Atomic # 7 Polarization: -69.92 SS G_CDS: -1.16 Total: -71.07 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Total: -66.55 6.68 -59.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385237682.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.630 kcal (2) G-P(sol) polarization free energy of solvation -66.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds