Wall clock time and date at job start Mon Mar 30 2020 02:31:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46899 * 109.46957 * 2 1 4 4 C 1.46897 * 111.00235 * 193.95343 * 3 2 1 5 5 C 1.50702 * 109.47154 * 66.04598 * 4 3 2 6 6 H 1.07999 * 119.99524 * 0.02562 * 5 4 3 7 7 C 1.37875 * 119.99925 * 180.02562 * 5 4 3 8 8 N 1.31516 * 120.00345 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99763 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47234 * 89.99666 * 9 7 5 11 11 H 1.48501 * 109.46945 * 210.00071 * 9 7 5 12 12 H 1.48504 * 109.46901 * 329.99852 * 9 7 5 13 13 C 1.40336 * 111.00155 * 70.00177 * 3 2 1 14 14 C 1.35207 * 120.72870 * 64.24198 * 13 3 2 15 15 N 1.36546 * 120.54227 * 180.29261 * 14 13 3 16 16 H 0.96998 * 118.92461 * 179.67565 * 15 14 13 17 17 C 1.35785 * 122.14340 * 359.69428 * 15 14 13 18 18 C 1.34660 * 121.45817 * 359.97438 * 17 15 14 19 19 C 1.42228 * 119.23412 * 0.02562 * 18 17 15 20 20 N 1.32294 * 120.96268 * 179.97438 * 19 18 17 21 21 H 1.08995 * 109.46868 * 299.99694 * 1 2 3 22 22 H 1.08999 * 109.47142 * 59.99702 * 1 2 3 23 23 H 1.09004 * 109.46878 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47283 * 240.00647 * 2 1 3 25 25 H 1.08998 * 109.47599 * 120.00036 * 2 1 3 26 26 H 1.09003 * 109.47413 * 186.04961 * 4 3 2 27 27 H 1.09003 * 109.47189 * 306.04683 * 4 3 2 28 28 H 0.97001 * 119.99978 * 179.97438 * 8 7 5 29 29 H 1.07997 * 119.72606 * 359.95943 * 14 13 3 30 30 H 1.07999 * 119.27261 * 179.97438 * 17 15 14 31 31 H 1.07997 * 120.38534 * 180.02562 * 18 17 15 32 32 H 0.97005 * 119.99680 * 0.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4499 1.4378 -0.3307 5 6 3.6535 0.9856 -1.7538 6 1 2.8051 0.6891 -2.3527 7 6 4.9228 0.9504 -2.2910 8 7 5.9558 1.3119 -1.5618 9 14 5.1750 0.3905 -4.0552 10 1 5.0920 1.5626 -4.9632 11 1 6.5112 -0.2440 -4.1869 12 1 4.1224 -0.5922 -4.4179 13 6 1.7648 2.0085 1.2311 14 6 2.3512 1.5637 2.3653 15 7 2.0960 2.1695 3.5621 16 1 2.5258 1.8282 4.3618 17 6 1.2599 3.2341 3.6691 18 6 0.6367 3.7492 2.5923 19 6 0.8593 3.1645 1.3151 20 7 0.2644 3.6428 0.2345 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8933 -0.5137 -0.8900 25 1 1.8934 -0.5138 0.8899 26 1 3.8112 2.4601 -0.2191 27 1 4.0028 0.7817 0.3417 28 1 6.8489 1.2868 -1.9397 29 1 3.0229 0.7189 2.3251 30 1 1.0909 3.6774 4.6394 31 1 -0.0246 4.5966 2.6973 32 1 -0.3334 4.4033 0.3065 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000389212820.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:47 Heat of formation + Delta-G solvation = 37.295693 kcal Electronic energy + Delta-G solvation = -15029.212983 eV Core-core repulsion = 12603.488226 eV Total energy + Delta-G solvation = -2425.724757 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.12505 -38.32564 -35.61806 -34.73365 -32.09403 -31.17946 -30.15753 -27.81636 -24.56295 -24.18567 -23.13596 -21.77618 -19.40205 -18.44395 -17.77946 -17.05527 -16.74198 -16.05288 -15.78146 -15.02063 -14.78454 -14.62685 -14.25874 -14.11725 -13.65205 -13.08541 -12.80559 -12.67984 -12.53460 -12.34349 -12.12975 -11.91630 -11.74693 -11.32222 -10.59918 -10.20663 -9.81334 -8.88521 -8.20207 -7.99585 -6.27032 0.63811 0.74381 1.40413 1.43324 1.53920 2.31622 2.42753 2.92133 3.13577 3.29413 3.82060 4.09770 4.25846 4.35863 4.49423 4.56445 4.74494 4.88225 5.01623 5.03715 5.13014 5.19702 5.30359 5.39666 5.50400 5.70866 5.84742 6.14293 6.17761 6.44307 6.58749 6.88645 7.02429 7.41890 7.80606 8.92206 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.034859 B = 0.007990 C = 0.007559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.043080 B = 3503.537036 C = 3703.280619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.065 3.935 3 N -0.489 5.489 4 C 0.223 3.777 5 C -0.522 4.522 6 H 0.056 0.944 7 C 0.004 3.996 8 N -0.932 5.932 9 Si 0.967 3.033 10 H -0.279 1.279 11 H -0.276 1.276 12 H -0.264 1.264 13 C 0.005 3.995 14 C 0.072 3.928 15 N -0.589 5.589 16 H 0.435 0.565 17 C 0.165 3.835 18 C -0.312 4.312 19 C 0.250 3.750 20 N -0.773 5.773 21 H 0.042 0.958 22 H 0.038 0.962 23 H 0.075 0.925 24 H 0.063 0.937 25 H 0.033 0.967 26 H -0.013 1.013 27 H -0.022 1.022 28 H 0.264 0.736 29 H 0.160 0.840 30 H 0.214 0.786 31 H 0.149 0.851 32 H 0.316 0.684 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.844 -0.573 15.214 17.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.062 4.062 3 N -0.211 5.211 4 C 0.098 3.902 5 C -0.560 4.560 6 H 0.075 0.925 7 C -0.194 4.194 8 N -0.573 5.573 9 Si 0.791 3.209 10 H -0.205 1.205 11 H -0.202 1.202 12 H -0.189 1.189 13 C -0.098 4.098 14 C -0.057 4.057 15 N -0.198 5.198 16 H 0.274 0.726 17 C 0.034 3.966 18 C -0.342 4.342 19 C 0.070 3.930 20 N -0.392 5.392 21 H 0.061 0.939 22 H 0.058 0.942 23 H 0.093 0.907 24 H 0.081 0.919 25 H 0.051 0.949 26 H 0.005 0.995 27 H -0.004 1.004 28 H 0.073 0.927 29 H 0.177 0.823 30 H 0.231 0.769 31 H 0.166 0.834 32 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -7.913 -0.589 13.710 15.841 hybrid contribution 0.720 0.142 0.371 0.822 sum -7.192 -0.447 14.081 15.817 Atomic orbital electron populations 1.21542 0.94422 1.01044 1.00877 1.22062 0.95977 0.87935 1.00213 1.59364 1.18190 1.16549 1.27010 1.19335 0.82153 0.93563 0.95102 1.21463 0.92715 1.43431 0.98416 0.92536 1.25844 0.95539 0.95572 1.02423 1.70069 0.99270 1.49469 1.38454 0.85427 0.77664 0.78499 0.79284 1.20512 1.20157 1.18876 1.19455 1.02380 0.98885 0.89070 1.22143 0.99193 0.98553 0.85818 1.41013 1.41704 1.28293 1.08807 0.72637 1.22121 0.87249 0.85912 1.01284 1.21779 1.11981 1.07968 0.92485 1.20453 0.90934 0.91338 0.90299 1.70687 1.17589 1.19479 1.31471 0.93935 0.94250 0.90659 0.91892 0.94896 0.99511 1.00423 0.92703 0.82280 0.76928 0.83384 0.87205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.35 9.95 71.98 0.72 -3.63 16 2 C 0.06 2.68 5.45 86.30 0.47 3.15 16 3 N -0.49 -23.51 4.36 -693.61 -3.02 -26.53 16 4 C 0.22 12.52 4.31 85.56 0.37 12.89 16 5 C -0.52 -31.31 8.31 25.60 0.21 -31.10 16 6 H 0.06 3.41 7.23 -2.91 -0.02 3.39 16 7 C 0.00 0.24 5.46 84.65 0.46 0.70 16 8 N -0.93 -57.09 13.29 21.45 0.28 -56.81 16 9 Si 0.97 46.18 29.54 68.60 2.03 48.21 16 10 H -0.28 -13.23 7.11 99.48 0.71 -12.53 16 11 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 12 H -0.26 -12.16 7.11 99.48 0.71 -11.46 16 13 C 0.00 0.19 3.97 39.40 0.16 0.34 16 14 C 0.07 2.15 9.75 83.26 0.81 2.96 16 15 N -0.59 -10.78 5.26 -194.70 -1.02 -11.80 16 16 H 0.43 3.85 8.89 -92.71 -0.82 3.03 16 17 C 0.17 2.78 11.12 83.26 0.93 3.71 16 18 C -0.31 -8.26 9.92 22.44 0.22 -8.04 16 19 C 0.25 9.77 6.98 42.39 0.30 10.06 16 20 N -0.77 -34.28 14.02 -47.93 -0.67 -34.95 16 21 H 0.04 1.50 7.52 -2.39 -0.02 1.48 16 22 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 23 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 24 H 0.06 2.87 6.60 -2.39 -0.02 2.85 16 25 H 0.03 1.21 7.11 -2.39 -0.02 1.20 16 26 H -0.01 -0.84 8.06 -2.39 -0.02 -0.86 16 27 H -0.02 -1.23 7.49 -2.39 -0.02 -1.24 16 28 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 29 H 0.16 4.63 7.11 -2.91 -0.02 4.61 16 30 H 0.21 0.98 8.06 -2.91 -0.02 0.96 16 31 H 0.15 3.27 8.06 -2.91 -0.02 3.25 16 32 H 0.32 12.31 8.79 -92.70 -0.81 11.49 16 Total: -1.00 -80.18 272.50 1.73 -78.45 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: -0.50 Total: 12.39 kcal Atomic # 6 Polarization: -13.59 SS G_CDS: 4.64 Total: -8.95 kcal Atomic # 7 Polarization: -125.66 SS G_CDS: -4.44 Total: -130.10 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 2.03 Total: 48.21 kcal Total: -80.18 1.73 -78.45 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389212820.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.745 kcal (2) G-P(sol) polarization free energy of solvation -80.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.450 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds