Wall clock time and date at job start Mon Mar 30 2020 03:05:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46890 * 1 3 3 C 1.46906 * 111.00461 * 2 1 4 4 C 1.53003 * 109.46565 * 66.04721 * 3 2 1 5 5 C 1.50700 * 109.46763 * 180.02562 * 4 3 2 6 6 H 1.07997 * 120.00363 * 359.97438 * 5 4 3 7 7 C 1.37879 * 119.99707 * 179.97438 * 5 4 3 8 8 N 1.31516 * 120.00195 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99822 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47090 * 90.00061 * 9 7 5 11 11 H 1.48502 * 109.47328 * 209.99953 * 9 7 5 12 12 H 1.48502 * 109.47155 * 330.00171 * 9 7 5 13 13 C 1.46905 * 111.00111 * 236.04803 * 2 1 3 14 14 C 1.50698 * 109.47055 * 293.95304 * 13 2 1 15 15 C 1.38624 * 120.44417 * 94.99492 * 14 13 2 16 16 C 1.38574 * 118.39673 * 179.70022 * 15 14 13 17 17 N 1.32345 * 119.10916 * 0.28037 * 16 15 14 18 18 C 1.31789 * 120.81651 * 359.97438 * 17 16 15 19 19 N 1.31809 * 121.75220 * 0.02562 * 18 17 16 20 20 H 1.09002 * 109.47633 * 183.95158 * 1 2 3 21 21 H 1.09006 * 109.47125 * 303.95128 * 1 2 3 22 22 H 1.09002 * 109.47289 * 63.94769 * 1 2 3 23 23 H 1.08994 * 109.47569 * 186.04675 * 3 2 1 24 24 H 1.08999 * 109.47046 * 306.05281 * 3 2 1 25 25 H 1.09000 * 109.47002 * 299.99773 * 4 3 2 26 26 H 1.09002 * 109.47446 * 60.00317 * 4 3 2 27 27 H 0.97000 * 119.99562 * 180.02562 * 8 7 5 28 28 H 1.09001 * 109.46935 * 173.95363 * 13 2 1 29 29 H 1.08999 * 109.47081 * 53.95233 * 13 2 1 30 30 H 1.08002 * 120.80485 * 359.97438 * 15 14 13 31 31 H 1.08001 * 120.45088 * 180.29937 * 16 15 14 32 32 H 1.08001 * 119.12241 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6315 2.0574 1.3183 5 6 2.1711 3.4644 1.3181 6 1 2.7192 3.8325 0.4635 7 6 1.9650 4.2819 2.4092 8 7 1.2972 3.8339 3.4498 9 14 2.6345 6.0258 2.4092 10 1 1.6177 6.9464 1.8402 11 1 2.9489 6.4354 3.8016 12 1 3.8691 6.0821 1.5859 13 6 1.9954 -0.7660 -1.1376 14 6 1.6369 -2.2204 -0.9729 15 6 0.5023 -2.7372 -1.5791 16 6 0.2164 -4.0818 -1.4046 17 7 1.0273 -4.8219 -0.6655 18 6 2.0947 -4.2949 -0.1000 19 7 2.3981 -3.0203 -0.2440 20 1 -0.3634 -1.0252 0.0708 21 1 -0.3634 0.5740 0.8525 22 1 -0.3634 0.4513 -0.9233 23 1 3.0797 1.3444 -0.1082 24 1 1.5611 1.9274 -0.8308 25 1 0.5472 2.0845 1.4265 26 1 2.0658 1.5014 2.1493 27 1 1.1519 4.4092 4.2171 28 1 3.0797 -0.6610 -1.1756 29 1 1.5610 -0.3872 -2.0628 30 1 -0.1408 -2.1080 -2.1766 31 1 -0.6563 -4.5201 -1.8658 32 1 2.7380 -4.9242 0.4972 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396618055.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:35 Heat of formation + Delta-G solvation = 48.051126 kcal Electronic energy + Delta-G solvation = -14367.260976 eV Core-core repulsion = 11942.002609 eV Total energy + Delta-G solvation = -2425.258367 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.01522 -37.34522 -33.96717 -33.02457 -32.17133 -29.67570 -27.65845 -25.71678 -24.35354 -23.60675 -21.70044 -19.95769 -17.56001 -16.83811 -16.48852 -15.52908 -15.30822 -14.70272 -14.54832 -14.19597 -13.88782 -13.68145 -12.73780 -12.44310 -12.16130 -11.63373 -11.29860 -11.07490 -10.91198 -10.87833 -10.68448 -10.52843 -9.89640 -9.69214 -9.46515 -9.18598 -9.11556 -8.33722 -7.83860 -5.99955 -4.02654 0.87275 1.04304 3.31894 3.38339 3.41514 3.71092 4.04867 4.12954 4.35037 4.46449 4.67203 4.93590 4.99988 5.33541 5.36097 5.45688 5.66196 5.68981 5.75274 5.86450 6.20390 6.33122 6.37314 6.45513 6.91539 7.00105 7.38718 7.45233 7.74951 7.87503 8.06616 8.09828 8.41666 9.04517 9.61062 11.11467 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.066584 B = 0.004907 C = 0.004890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 420.422521 B = 5704.351065 C = 5724.403541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.532 5.532 3 C 0.064 3.936 4 C 0.028 3.972 5 C -0.523 4.523 6 H 0.054 0.946 7 C 0.059 3.941 8 N -0.893 5.893 9 Si 0.893 3.107 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.274 1.274 13 C 0.096 3.904 14 C 0.197 3.803 15 C -0.225 4.225 16 C 0.143 3.857 17 N -0.530 5.530 18 C 0.292 3.708 19 N -0.501 5.501 20 H 0.052 0.948 21 H 0.082 0.918 22 H 0.021 0.979 23 H 0.064 0.936 24 H 0.023 0.977 25 H 0.017 0.983 26 H 0.026 0.974 27 H 0.261 0.739 28 H 0.095 0.905 29 H 0.050 0.950 30 H 0.144 0.856 31 H 0.165 0.835 32 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.008 -12.784 -10.551 16.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.257 5.257 3 C -0.062 4.062 4 C -0.010 4.010 5 C -0.561 4.561 6 H 0.073 0.927 7 C -0.143 4.143 8 N -0.532 5.532 9 Si 0.720 3.280 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.199 1.199 13 C -0.033 4.033 14 C 0.050 3.950 15 C -0.247 4.247 16 C -0.022 4.022 17 N -0.244 5.244 18 C 0.004 3.996 19 N -0.215 5.215 20 H 0.071 0.929 21 H 0.101 0.899 22 H 0.040 0.960 23 H 0.083 0.917 24 H 0.041 0.959 25 H 0.036 0.964 26 H 0.044 0.956 27 H 0.070 0.930 28 H 0.113 0.887 29 H 0.068 0.932 30 H 0.162 0.838 31 H 0.182 0.818 32 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -1.308 -13.524 -9.390 16.516 hybrid contribution -0.586 1.854 -1.111 2.239 sum -1.894 -11.669 -10.501 15.812 Atomic orbital electron populations 1.22472 0.87942 1.00848 1.01375 1.62051 1.07648 1.16304 1.39659 1.22398 0.98814 0.84248 1.00712 1.19109 0.96931 0.94065 0.90859 1.21176 1.35273 0.97665 1.02025 0.92733 1.24992 0.95278 0.98494 0.95514 1.69975 1.40777 1.36388 1.06072 0.86589 0.79327 0.84789 0.77249 1.20725 1.21188 1.19852 1.21063 1.02059 0.86728 0.93412 1.21719 0.89062 0.96379 0.87859 1.22822 0.99845 0.97996 1.04082 1.23148 0.96870 0.90412 0.91775 1.68392 1.05613 1.40484 1.09941 1.25016 0.91563 0.89360 0.93612 1.68297 1.32477 1.05315 1.15375 0.92930 0.89889 0.96021 0.91731 0.95891 0.96444 0.95603 0.92973 0.88688 0.93167 0.83831 0.81756 0.78882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 9.03 60.06 0.54 0.91 16 2 N -0.53 -9.70 4.75 -244.37 -1.16 -10.87 16 3 C 0.06 1.34 4.90 -3.82 -0.02 1.32 16 4 C 0.03 0.72 4.90 -27.88 -0.14 0.58 16 5 C -0.52 -14.75 9.11 -34.44 -0.31 -15.06 16 6 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 7 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 8 N -0.89 -26.95 13.29 55.43 0.74 -26.22 16 9 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 13 C 0.10 1.41 5.33 -4.97 -0.03 1.39 16 14 C 0.20 2.77 5.66 -82.24 -0.47 2.31 16 15 C -0.22 -2.53 8.53 -39.32 -0.34 -2.87 16 16 C 0.14 1.52 11.30 -17.21 -0.19 1.33 16 17 N -0.53 -6.62 10.44 -14.58 -0.15 -6.77 16 18 C 0.29 3.74 12.29 -92.15 -1.13 2.61 16 19 N -0.50 -7.54 10.38 -10.79 -0.11 -7.65 16 20 H 0.05 0.79 6.42 -51.93 -0.33 0.45 16 21 H 0.08 1.56 6.30 -51.93 -0.33 1.23 16 22 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 23 H 0.06 1.33 7.93 -51.93 -0.41 0.91 16 24 H 0.02 0.46 8.12 -51.93 -0.42 0.04 16 25 H 0.02 0.47 6.47 -51.93 -0.34 0.14 16 26 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 27 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 28 H 0.09 1.41 7.93 -51.93 -0.41 1.00 16 29 H 0.05 0.64 8.04 -51.93 -0.42 0.22 16 30 H 0.14 1.27 8.06 -52.49 -0.42 0.85 16 31 H 0.17 1.15 8.06 -52.49 -0.42 0.73 16 32 H 0.19 1.86 8.06 -52.49 -0.42 1.44 16 LS Contribution 273.94 15.07 4.13 4.13 Total: -1.00 -32.07 273.94 -8.08 -40.14 By element: Atomic # 1 Polarization: 0.86 SS G_CDS: -4.31 Total: -3.45 kcal Atomic # 6 Polarization: -3.72 SS G_CDS: -2.18 Total: -5.90 kcal Atomic # 7 Polarization: -50.81 SS G_CDS: -0.69 Total: -51.50 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -32.07 -8.08 -40.14 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396618055.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.193 kcal (2) G-P(sol) polarization free energy of solvation -32.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.142 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds