Wall clock time and date at job start Mon Mar 30 2020 03:41:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.51531 * 121.00310 * 2 1 4 4 C 1.53905 * 107.77133 * 134.49483 * 3 2 1 5 5 H 1.08994 * 111.96992 * 181.58183 * 4 3 2 6 6 C 1.54463 * 108.44633 * 305.72562 * 4 3 2 7 7 C 1.54215 * 105.06209 * 90.33814 * 6 4 3 8 8 C 1.54459 * 105.06557 * 0.02562 * 7 6 4 9 9 H 1.09002 * 112.53066 * 145.81212 * 8 7 6 10 10 C 1.51522 * 121.00749 * 180.02562 * 2 1 3 11 11 N 1.48609 * 107.39351 * 58.14870 * 4 3 2 12 12 C 1.46896 * 111.00088 * 165.10799 * 11 4 3 13 13 C 1.53007 * 109.47132 * 176.05572 * 12 11 4 14 14 C 1.50703 * 109.46834 * 174.57032 * 13 12 11 15 15 H 1.07994 * 120.00145 * 359.97438 * 14 13 12 16 16 C 1.37879 * 119.99423 * 180.27420 * 14 13 12 17 17 N 1.31506 * 120.00065 * 359.72197 * 16 14 13 18 18 Si 1.86800 * 119.99685 * 179.72557 * 16 14 13 19 19 H 1.48500 * 109.47387 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47270 * 119.99771 * 18 16 14 21 21 H 1.48505 * 109.47107 * 239.99753 * 18 16 14 22 22 H 1.08000 * 119.99953 * 359.97438 * 1 2 3 23 23 H 1.08001 * 119.99690 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.79546 * 14.92156 * 3 2 1 25 25 H 1.09000 * 109.79682 * 254.06349 * 3 2 1 26 26 H 1.08991 * 110.32631 * 209.23528 * 6 4 3 27 27 H 1.09001 * 110.32649 * 331.44428 * 6 4 3 28 28 H 1.08996 * 110.32865 * 241.10855 * 7 6 4 29 29 H 1.09004 * 110.41293 * 118.94264 * 7 6 4 30 30 H 1.08998 * 109.80043 * 345.07422 * 10 2 1 31 31 H 1.08998 * 109.80283 * 105.93825 * 10 2 1 32 32 H 1.08997 * 109.47255 * 56.05199 * 12 11 4 33 33 H 1.09008 * 109.46933 * 296.04878 * 12 11 4 34 34 H 1.09002 * 109.47266 * 54.56991 * 13 12 11 35 35 H 1.09003 * 109.46686 * 294.56853 * 13 12 11 36 36 H 0.97005 * 119.99906 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0905 1.2988 0.0000 4 6 3.2129 1.1724 1.0454 5 1 3.8035 2.0852 1.1220 6 6 2.5792 0.7767 2.3974 7 6 2.5831 -0.7655 2.4057 8 6 3.2193 -1.1726 1.0584 9 1 3.8130 -2.0835 1.1352 10 6 2.0905 -1.2987 -0.0006 11 7 4.0435 0.0000 0.6659 12 6 5.3242 0.0071 1.3853 13 6 6.1078 -1.2620 1.0443 14 6 7.4747 -1.1930 1.6751 15 1 7.7565 -0.3302 2.2603 16 6 8.3678 -2.2288 1.4999 17 7 8.0248 -3.2792 0.7869 18 14 10.0649 -2.1400 2.2754 19 1 10.2021 -0.8633 3.0214 20 1 10.2428 -3.2809 3.2091 21 1 11.0992 -2.2048 1.2118 22 1 -0.5400 0.9353 0.0004 23 1 -0.5400 -0.9353 0.0004 24 1 1.4312 2.1257 0.2641 25 1 2.5220 1.4702 -0.9862 26 1 3.1778 1.1612 3.2231 27 1 1.5582 1.1530 2.4616 28 1 1.5641 -1.1463 2.4738 29 1 3.1827 -1.1397 3.2355 30 1 1.4314 -2.1258 0.2632 31 1 2.5221 -1.4697 -0.9868 32 1 5.1378 0.0416 2.4587 33 1 5.9027 0.8821 1.0887 34 1 6.2108 -1.3457 -0.0377 35 1 5.5745 -2.1322 1.4270 36 1 8.6530 -4.0081 0.6639 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595842900.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:05 Heat of formation + Delta-G solvation = 10.774306 kcal Electronic energy + Delta-G solvation = -15525.396084 eV Core-core repulsion = 13202.061616 eV Total energy + Delta-G solvation = -2323.334468 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 221.148 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.21221 -34.82996 -33.11731 -31.31678 -31.07750 -28.73413 -27.00852 -24.28597 -23.93138 -21.23114 -20.22316 -19.44675 -17.59083 -16.44715 -15.53507 -15.02365 -14.53718 -14.32256 -13.95019 -13.55512 -12.88383 -12.78483 -12.34711 -12.28173 -12.17010 -11.55560 -11.31767 -11.11938 -11.01617 -10.80679 -10.47639 -10.24493 -10.16628 -10.08584 -9.86270 -9.29272 -9.07484 -8.86019 -8.33768 -7.81779 -5.99064 -4.01054 2.43606 3.31626 3.39089 3.43101 4.38385 4.52524 4.84024 4.92985 5.22411 5.23509 5.35874 5.37376 5.40837 5.61533 5.66632 5.82982 5.91365 6.00256 6.04375 6.08895 6.20843 6.25298 6.27269 6.33263 6.42789 6.53853 6.58220 6.83730 6.98189 7.04923 7.47171 7.56467 7.78085 7.90522 8.09680 8.44805 9.06179 9.62627 11.12417 Molecular weight = 221.15amu Principal moments of inertia in cm(-1) A = 0.054228 B = 0.006517 C = 0.006276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 516.219008 B = 4295.676791 C = 4460.464633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.091 4.091 3 C -0.074 4.074 4 C 0.062 3.938 5 H 0.087 0.913 6 C -0.144 4.144 7 C -0.144 4.144 8 C 0.064 3.936 9 H 0.107 0.893 10 C -0.077 4.077 11 N -0.504 5.504 12 C 0.053 3.947 13 C 0.027 3.973 14 C -0.520 4.520 15 H 0.054 0.946 16 C 0.058 3.942 17 N -0.894 5.894 18 Si 0.891 3.109 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 H 0.091 0.909 23 H 0.093 0.907 24 H 0.064 0.936 25 H 0.080 0.920 26 H 0.060 0.940 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.081 0.919 32 H 0.022 0.978 33 H 0.061 0.939 34 H 0.025 0.975 35 H 0.016 0.984 36 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.172 6.550 0.460 14.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C -0.091 4.091 3 C -0.111 4.111 4 C -0.047 4.047 5 H 0.105 0.895 6 C -0.183 4.183 7 C -0.183 4.183 8 C -0.045 4.045 9 H 0.125 0.875 10 C -0.114 4.114 11 N -0.227 5.227 12 C -0.074 4.074 13 C -0.011 4.011 14 C -0.558 4.558 15 H 0.072 0.928 16 C -0.143 4.143 17 N -0.533 5.533 18 Si 0.719 3.281 19 H -0.198 1.198 20 H -0.211 1.211 21 H -0.210 1.210 22 H 0.110 0.890 23 H 0.111 0.889 24 H 0.083 0.917 25 H 0.098 0.902 26 H 0.079 0.921 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.100 0.900 32 H 0.040 0.960 33 H 0.079 0.921 34 H 0.043 0.957 35 H 0.034 0.966 36 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -12.943 6.390 -0.185 14.435 hybrid contribution 0.783 -0.027 1.360 1.569 sum -12.159 6.362 1.175 13.773 Atomic orbital electron populations 1.23444 0.94941 1.01203 1.06363 1.22061 0.94600 0.96309 0.96143 1.21026 0.95956 0.94197 0.99961 1.22973 0.93669 0.95659 0.92431 0.89492 1.22807 1.00761 0.96213 0.98518 1.22790 1.00911 0.95451 0.99184 1.23343 0.93153 0.96378 0.91608 0.87542 1.21299 0.96040 0.93850 1.00231 1.65235 1.03141 1.00626 1.53669 1.22397 0.88521 1.01940 0.94569 1.19127 0.93608 0.90684 0.97632 1.21229 0.98863 1.03861 1.31895 0.92768 1.24989 0.98523 0.95471 0.95331 1.69977 1.35649 1.07794 1.39891 0.86552 0.84485 0.77947 0.79103 1.19785 1.21056 1.20987 0.89023 0.88885 0.91718 0.90201 0.92119 0.91702 0.91684 0.91741 0.91645 0.90025 0.96009 0.92073 0.95682 0.96610 0.93071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.61 14.00 29.02 0.41 -2.20 16 2 C -0.09 -1.22 4.17 -100.25 -0.42 -1.64 16 3 C -0.07 -0.98 5.63 -27.00 -0.15 -1.13 16 4 C 0.06 0.94 3.58 -65.53 -0.23 0.70 16 5 H 0.09 1.27 8.07 -51.93 -0.42 0.85 16 6 C -0.14 -2.04 5.47 -25.33 -0.14 -2.18 16 7 C -0.14 -2.20 5.51 -25.33 -0.14 -2.34 16 8 C 0.06 1.10 3.46 -64.79 -0.22 0.87 16 9 H 0.11 2.08 5.98 -51.93 -0.31 1.77 16 10 C -0.08 -1.13 5.69 -26.27 -0.15 -1.28 16 11 N -0.50 -9.28 4.96 -212.21 -1.05 -10.33 16 12 C 0.05 1.13 4.77 -3.82 -0.02 1.11 16 13 C 0.03 0.70 4.70 -27.88 -0.13 0.57 16 14 C -0.52 -14.80 9.11 -34.44 -0.31 -15.11 16 15 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 16 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 17 N -0.89 -26.96 13.29 55.43 0.74 -26.23 16 18 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 19 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 20 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 21 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 22 H 0.09 0.96 7.97 -52.49 -0.42 0.54 16 23 H 0.09 1.02 7.97 -52.49 -0.42 0.60 16 24 H 0.06 0.73 7.96 -51.93 -0.41 0.32 16 25 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 26 H 0.06 0.86 8.13 -51.93 -0.42 0.44 16 27 H 0.06 0.83 7.74 -51.93 -0.40 0.43 16 28 H 0.06 0.90 7.76 -51.93 -0.40 0.50 16 29 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.06 0.86 7.96 -51.93 -0.41 0.45 16 31 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 32 H 0.02 0.46 7.17 -51.93 -0.37 0.09 16 33 H 0.06 1.31 8.14 -51.92 -0.42 0.89 16 34 H 0.02 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.02 0.43 6.40 -51.93 -0.33 0.10 16 36 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 280.52 15.07 4.23 4.23 Total: -1.00 -29.48 280.52 -8.70 -38.18 By element: Atomic # 1 Polarization: 4.46 SS G_CDS: -5.98 Total: -1.52 kcal Atomic # 6 Polarization: -19.45 SS G_CDS: -1.61 Total: -21.06 kcal Atomic # 7 Polarization: -36.24 SS G_CDS: -0.32 Total: -36.56 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -29.48 -8.70 -38.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595842900.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.959 kcal (2) G-P(sol) polarization free energy of solvation -29.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds