Wall clock time and date at job start Mon Mar 30 2020 03:41:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.51531 * 121.00310 * 2 1 4 4 C 1.53905 * 107.77133 * 134.49483 * 3 2 1 5 5 H 1.08994 * 111.96992 * 181.58183 * 4 3 2 6 6 C 1.54463 * 108.44633 * 305.72562 * 4 3 2 7 7 C 1.54215 * 105.06209 * 90.33814 * 6 4 3 8 8 C 1.54459 * 105.06557 * 0.02562 * 7 6 4 9 9 H 1.09002 * 112.53066 * 145.81212 * 8 7 6 10 10 C 1.51522 * 121.00749 * 180.02562 * 2 1 3 11 11 N 1.48609 * 107.39351 * 58.14870 * 4 3 2 12 12 C 1.46896 * 111.00088 * 165.10799 * 11 4 3 13 13 C 1.53007 * 109.47132 * 176.05572 * 12 11 4 14 14 C 1.50703 * 109.46834 * 174.57032 * 13 12 11 15 15 H 1.07994 * 120.00145 * 359.97438 * 14 13 12 16 16 C 1.37879 * 119.99423 * 180.27420 * 14 13 12 17 17 N 1.31506 * 120.00065 * 359.72197 * 16 14 13 18 18 Si 1.86800 * 119.99685 * 179.72557 * 16 14 13 19 19 H 1.48500 * 109.47387 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47270 * 119.99771 * 18 16 14 21 21 H 1.48505 * 109.47107 * 239.99753 * 18 16 14 22 22 H 1.08000 * 119.99953 * 359.97438 * 1 2 3 23 23 H 1.08001 * 119.99690 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.79546 * 14.92156 * 3 2 1 25 25 H 1.09000 * 109.79682 * 254.06349 * 3 2 1 26 26 H 1.08991 * 110.32631 * 209.23528 * 6 4 3 27 27 H 1.09001 * 110.32649 * 331.44428 * 6 4 3 28 28 H 1.08996 * 110.32865 * 241.10855 * 7 6 4 29 29 H 1.09004 * 110.41293 * 118.94264 * 7 6 4 30 30 H 1.08998 * 109.80043 * 345.07422 * 10 2 1 31 31 H 1.08998 * 109.80283 * 105.93825 * 10 2 1 32 32 H 1.08997 * 109.47255 * 56.05199 * 12 11 4 33 33 H 1.09008 * 109.46933 * 296.04878 * 12 11 4 34 34 H 1.09002 * 109.47266 * 54.56991 * 13 12 11 35 35 H 1.09003 * 109.46686 * 294.56853 * 13 12 11 36 36 H 0.97005 * 119.99906 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0905 1.2988 0.0000 4 6 3.2129 1.1724 1.0454 5 1 3.8035 2.0852 1.1220 6 6 2.5792 0.7767 2.3974 7 6 2.5831 -0.7655 2.4057 8 6 3.2193 -1.1726 1.0584 9 1 3.8130 -2.0835 1.1352 10 6 2.0905 -1.2987 -0.0006 11 7 4.0435 0.0000 0.6659 12 6 5.3242 0.0071 1.3853 13 6 6.1078 -1.2620 1.0443 14 6 7.4747 -1.1930 1.6751 15 1 7.7565 -0.3302 2.2603 16 6 8.3678 -2.2288 1.4999 17 7 8.0248 -3.2792 0.7869 18 14 10.0649 -2.1400 2.2754 19 1 10.2021 -0.8633 3.0214 20 1 10.2428 -3.2809 3.2091 21 1 11.0992 -2.2048 1.2118 22 1 -0.5400 0.9353 0.0004 23 1 -0.5400 -0.9353 0.0004 24 1 1.4312 2.1257 0.2641 25 1 2.5220 1.4702 -0.9862 26 1 3.1778 1.1612 3.2231 27 1 1.5582 1.1530 2.4616 28 1 1.5641 -1.1463 2.4738 29 1 3.1827 -1.1397 3.2355 30 1 1.4314 -2.1258 0.2632 31 1 2.5221 -1.4697 -0.9868 32 1 5.1378 0.0416 2.4587 33 1 5.9027 0.8821 1.0887 34 1 6.2108 -1.3457 -0.0377 35 1 5.5745 -2.1322 1.4270 36 1 8.6530 -4.0081 0.6639 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595842900.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:05 Heat of formation + Delta-G solvation = -6.915596 kcal Electronic energy + Delta-G solvation = -15526.163176 eV Core-core repulsion = 13202.061616 eV Total energy + Delta-G solvation = -2324.101559 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 221.148 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.48347 -36.30441 -34.95555 -32.91341 -32.35082 -30.33341 -28.37336 -25.88480 -25.41658 -22.90840 -21.40597 -20.91943 -18.86918 -18.44233 -16.92855 -16.53837 -16.35214 -15.55585 -15.15205 -14.85728 -14.55076 -14.33441 -13.94686 -13.59479 -13.40429 -13.18497 -12.92568 -12.69738 -12.45408 -12.36037 -12.15580 -11.84713 -11.56380 -11.36599 -11.28995 -11.12524 -11.06329 -10.55635 -9.90023 -9.25641 -8.21417 -6.32767 1.38920 1.39569 1.46835 1.52906 2.39395 3.10606 3.11944 3.71433 3.74407 4.01441 4.12870 4.20073 4.27571 4.42249 4.50509 4.54425 4.58383 4.75789 4.79997 4.95595 4.97952 4.99306 5.02949 5.09371 5.15847 5.19784 5.26232 5.33677 5.44825 5.65394 5.78584 5.82433 6.02963 6.10126 6.22850 6.37430 6.84236 7.36446 8.91020 Molecular weight = 221.15amu Principal moments of inertia in cm(-1) A = 0.054228 B = 0.006517 C = 0.006276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 516.219008 B = 4295.676791 C = 4460.464633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.116 4.116 3 C -0.067 4.067 4 C 0.057 3.943 5 H 0.092 0.908 6 C -0.136 4.136 7 C -0.138 4.138 8 C 0.056 3.944 9 H 0.067 0.933 10 C -0.071 4.071 11 N -0.520 5.520 12 C 0.072 3.928 13 C 0.037 3.963 14 C -0.543 4.543 15 H 0.059 0.941 16 C 0.001 3.999 17 N -0.932 5.932 18 Si 0.967 3.033 19 H -0.262 1.262 20 H -0.277 1.277 21 H -0.277 1.277 22 H 0.113 0.887 23 H 0.102 0.898 24 H 0.094 0.906 25 H 0.070 0.930 26 H 0.058 0.942 27 H 0.090 0.910 28 H 0.084 0.916 29 H 0.046 0.954 30 H 0.080 0.920 31 H 0.063 0.937 32 H 0.021 0.979 33 H 0.059 0.941 34 H -0.010 1.010 35 H -0.007 1.007 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.491 8.044 1.222 16.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.116 4.116 3 C -0.105 4.105 4 C -0.051 4.051 5 H 0.110 0.890 6 C -0.174 4.174 7 C -0.178 4.178 8 C -0.053 4.053 9 H 0.085 0.915 10 C -0.108 4.108 11 N -0.242 5.242 12 C -0.056 4.056 13 C 0.000 4.000 14 C -0.582 4.582 15 H 0.077 0.923 16 C -0.196 4.196 17 N -0.572 5.572 18 Si 0.791 3.209 19 H -0.186 1.186 20 H -0.203 1.203 21 H -0.203 1.203 22 H 0.131 0.869 23 H 0.120 0.880 24 H 0.112 0.888 25 H 0.089 0.911 26 H 0.077 0.923 27 H 0.108 0.892 28 H 0.103 0.897 29 H 0.065 0.935 30 H 0.098 0.902 31 H 0.081 0.919 32 H 0.040 0.960 33 H 0.077 0.923 34 H 0.008 0.992 35 H 0.011 0.989 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -14.280 7.896 0.577 16.328 hybrid contribution 1.113 -0.535 1.074 1.636 sum -13.167 7.362 1.651 15.175 Atomic orbital electron populations 1.23682 0.94120 1.02676 1.02649 1.21918 0.95162 0.95211 0.99329 1.20998 0.95501 0.95218 0.98742 1.23135 0.93915 0.94210 0.93851 0.89024 1.22757 1.02083 0.94921 0.97687 1.22727 1.01349 0.96604 0.97077 1.23303 0.93497 0.94421 0.94032 0.91467 1.21205 0.95452 0.95871 0.98287 1.65206 1.02750 1.02733 1.53560 1.21998 0.89905 0.98994 0.94716 1.18929 0.93720 0.92413 0.94940 1.21651 1.00055 1.04236 1.32244 0.92298 1.25966 1.03095 0.94888 0.95691 1.70115 1.37377 1.08626 1.41123 0.85375 0.78755 0.78485 0.78273 1.18572 1.20262 1.20297 0.86928 0.87961 0.88781 0.91145 0.92344 0.89164 0.89735 0.93473 0.90164 0.91865 0.96024 0.92290 0.99197 0.98856 0.92748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.74 14.00 67.78 0.95 -2.79 16 2 C -0.12 -2.80 4.17 -15.96 -0.07 -2.87 16 3 C -0.07 -1.61 5.63 30.42 0.17 -1.44 16 4 C 0.06 1.65 3.58 45.39 0.16 1.81 16 5 H 0.09 2.53 8.07 -2.39 -0.02 2.51 16 6 C -0.14 -3.55 5.47 31.50 0.17 -3.38 16 7 C -0.14 -4.12 5.51 31.50 0.17 -3.95 16 8 C 0.06 1.99 3.46 45.87 0.16 2.14 16 9 H 0.07 2.86 5.98 -2.39 -0.01 2.84 16 10 C -0.07 -2.06 5.69 30.90 0.18 -1.88 16 11 N -0.52 -19.52 4.96 -825.32 -4.09 -23.62 16 12 C 0.07 3.17 4.77 86.31 0.41 3.58 16 13 C 0.04 2.06 4.70 29.85 0.14 2.20 16 14 C -0.54 -31.83 9.11 25.60 0.23 -31.59 16 15 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 16 C 0.00 0.09 5.46 84.66 0.46 0.55 16 17 N -0.93 -57.94 13.29 21.45 0.28 -57.66 16 18 Si 0.97 45.00 29.54 68.60 2.03 47.02 16 19 H -0.26 -11.60 7.11 99.48 0.71 -10.90 16 20 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 21 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 22 H 0.11 1.75 7.97 -2.91 -0.02 1.73 16 23 H 0.10 1.80 7.97 -2.91 -0.02 1.78 16 24 H 0.09 1.72 7.96 -2.39 -0.02 1.70 16 25 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 26 H 0.06 1.55 8.13 -2.39 -0.02 1.53 16 27 H 0.09 1.93 7.74 -2.39 -0.02 1.92 16 28 H 0.08 2.16 7.76 -2.39 -0.02 2.14 16 29 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.08 2.04 7.96 -2.39 -0.02 2.02 16 31 H 0.06 2.02 8.14 -2.39 -0.02 2.01 16 32 H 0.02 0.94 7.17 -2.39 -0.02 0.92 16 33 H 0.06 2.59 8.14 -2.38 -0.02 2.57 16 34 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 35 H -0.01 -0.40 6.40 -2.39 -0.02 -0.42 16 36 H 0.26 15.30 8.31 -92.70 -0.77 14.53 16 Total: -1.00 -65.09 280.52 2.39 -62.70 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: 1.02 Total: 9.17 kcal Atomic # 6 Polarization: -40.77 SS G_CDS: 3.14 Total: -37.62 kcal Atomic # 7 Polarization: -77.47 SS G_CDS: -3.81 Total: -81.27 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.02 kcal Total: -65.09 2.39 -62.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595842900.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.785 kcal (2) G-P(sol) polarization free energy of solvation -65.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds