Wall clock time and date at job start Mon Mar 30 2020 03:23:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86799 * 119.99885 * 2 1 4 4 H 1.48496 * 109.47412 * 270.00355 * 3 2 1 5 5 H 1.48502 * 109.47108 * 30.00674 * 3 2 1 6 6 H 1.48501 * 109.47148 * 150.00538 * 3 2 1 7 7 C 1.37874 * 119.99848 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99775 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00218 * 359.97438 * 7 2 1 10 10 C 1.53001 * 115.56113 * 179.89197 * 9 7 2 11 11 N 1.46903 * 109.47303 * 325.69207 * 10 9 7 12 12 C 1.47195 * 110.99763 * 267.23179 * 11 10 9 13 13 C 1.52855 * 88.79510 * 224.37450 * 12 11 10 14 14 H 1.08998 * 115.73686 * 138.64170 * 13 12 11 15 15 C 1.53126 * 115.47979 * 276.09111 * 13 12 11 16 16 C 1.53732 * 107.24332 * 93.54450 * 15 13 12 17 17 C 1.54044 * 105.84961 * 17.62778 * 16 15 13 18 18 C 1.47825 * 111.00125 * 169.99851 * 11 10 9 19 19 H 1.09006 * 115.94366 * 16.80695 * 18 11 10 20 20 C 1.53000 * 117.49604 * 325.58253 * 9 7 2 21 21 C 1.52997 * 117.49669 * 34.20693 * 9 7 2 22 22 H 0.97002 * 119.99886 * 359.97438 * 1 2 3 23 23 H 1.09004 * 109.46610 * 85.68677 * 10 9 7 24 24 H 1.08996 * 109.47111 * 205.68592 * 10 9 7 25 25 H 1.09010 * 113.33386 * 339.35800 * 12 11 10 26 26 H 1.08999 * 113.34242 * 109.38699 * 12 11 10 27 27 H 1.09000 * 109.88485 * 212.95550 * 15 13 12 28 28 H 1.09000 * 109.88358 * 333.97927 * 15 13 12 29 29 H 1.09001 * 110.17570 * 136.72190 * 16 15 13 30 30 H 1.09001 * 110.17380 * 258.45513 * 16 15 13 31 31 H 1.08997 * 110.38877 * 211.59677 * 17 16 15 32 32 H 1.09003 * 110.39176 * 89.20802 * 17 16 15 33 33 H 1.08990 * 117.49990 * 359.97438 * 20 9 7 34 34 H 1.09004 * 117.49237 * 214.97804 * 20 9 7 35 35 H 1.08999 * 117.49685 * 145.02383 * 21 9 7 36 36 H 1.08999 * 117.52022 * 359.97438 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4402 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.1163 -3.7610 -0.0038 11 7 3.3352 -3.5170 -0.7866 12 6 3.1529 -3.9275 -2.1883 13 6 4.5308 -4.5874 -2.1406 14 1 4.6077 -5.5586 -2.6294 15 6 5.7172 -3.6546 -2.3996 16 6 6.2151 -3.1599 -1.0318 17 6 5.6278 -4.1339 0.0071 18 6 4.3031 -4.6215 -0.6180 19 1 3.9021 -5.5486 -0.2082 20 6 -0.0714 -2.5513 0.7671 21 6 -0.0744 -2.5496 -0.7630 22 1 -0.4850 0.8401 0.0004 23 1 2.3876 -4.0181 1.0202 24 1 1.5571 -4.5839 -0.4490 25 1 2.3383 -4.6385 -2.3275 26 1 3.1001 -3.0876 -2.8810 27 1 6.5124 -4.1988 -2.9090 28 1 5.3978 -2.8089 -3.0086 29 1 7.3042 -3.1847 -0.9968 30 1 5.8563 -2.1477 -0.8448 31 1 5.4364 -3.6165 0.9471 32 1 6.3047 -4.9735 0.1657 33 1 -0.3962 -1.6419 1.2724 34 1 -0.3250 -3.4847 1.2698 35 1 -0.3301 -3.4817 -1.2668 36 1 -0.4020 -1.6389 -1.2644 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602792961.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:45 Heat of formation + Delta-G solvation = 46.562082 kcal Electronic energy + Delta-G solvation = -15775.903403 eV Core-core repulsion = 13454.120809 eV Total energy + Delta-G solvation = -2321.782593 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 221.148 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.72961 -38.38879 -34.98931 -33.47137 -30.81829 -28.99952 -27.42608 -25.71551 -24.41828 -22.65561 -21.03550 -20.88813 -19.30064 -18.10991 -17.26957 -16.79258 -16.21038 -15.58833 -15.27869 -14.76761 -14.62663 -14.18246 -13.54661 -13.17555 -12.95920 -12.77182 -12.56565 -12.36668 -12.20615 -11.95328 -11.93978 -11.72194 -11.65425 -11.23671 -11.14864 -11.08131 -10.69261 -10.21230 -9.96616 -9.36281 -7.93757 -6.00516 1.41051 1.42314 1.52809 2.47366 3.04933 3.20992 3.40018 3.83203 3.91990 4.22298 4.29420 4.39389 4.41662 4.50452 4.52818 4.65352 4.74100 4.77774 4.86853 4.93233 5.01142 5.06296 5.15400 5.19145 5.19855 5.30245 5.34730 5.40127 5.48865 5.62421 5.69568 5.84476 6.01454 6.20815 6.46160 6.66921 7.04245 7.55507 9.01117 Molecular weight = 221.15amu Principal moments of inertia in cm(-1) A = 0.027377 B = 0.010446 C = 0.008513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.518280 B = 2679.797960 C = 3288.252406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.001 3.999 3 Si 0.953 3.047 4 H -0.281 1.281 5 H -0.288 1.288 6 H -0.271 1.271 7 C -0.456 4.456 8 H 0.065 0.935 9 C 0.018 3.982 10 C 0.078 3.922 11 N -0.461 5.461 12 C 0.011 3.989 13 C -0.109 4.109 14 H 0.108 0.892 15 C -0.095 4.095 16 C -0.112 4.112 17 C -0.100 4.100 18 C 0.009 3.991 19 H 0.091 0.909 20 C -0.193 4.193 21 C -0.190 4.190 22 H 0.252 0.748 23 H 0.057 0.943 24 H 0.033 0.967 25 H 0.063 0.937 26 H 0.061 0.939 27 H 0.085 0.915 28 H 0.052 0.948 29 H 0.078 0.922 30 H 0.039 0.961 31 H 0.048 0.952 32 H 0.089 0.911 33 H 0.080 0.920 34 H 0.062 0.938 35 H 0.057 0.943 36 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.334 -9.892 -3.296 14.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.196 4.196 3 Si 0.780 3.220 4 H -0.207 1.207 5 H -0.214 1.214 6 H -0.195 1.195 7 C -0.494 4.494 8 H 0.083 0.917 9 C 0.017 3.983 10 C -0.050 4.050 11 N -0.183 5.183 12 C -0.118 4.118 13 C -0.128 4.128 14 H 0.126 0.874 15 C -0.133 4.133 16 C -0.150 4.150 17 C -0.138 4.138 18 C -0.100 4.100 19 H 0.109 0.891 20 C -0.232 4.232 21 C -0.228 4.228 22 H 0.062 0.938 23 H 0.076 0.924 24 H 0.051 0.949 25 H 0.081 0.919 26 H 0.079 0.921 27 H 0.104 0.896 28 H 0.071 0.929 29 H 0.096 0.904 30 H 0.058 0.942 31 H 0.067 0.933 32 H 0.107 0.893 33 H 0.098 0.902 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 10.371 -9.057 -3.103 14.114 hybrid contribution -0.813 0.485 0.018 0.947 sum 9.559 -8.571 -3.084 13.204 Atomic orbital electron populations 1.70191 1.06771 1.25896 1.52214 1.25752 0.95706 1.02112 0.96008 0.85632 0.78691 0.79925 0.77782 1.20740 1.21444 1.19544 1.20877 0.93201 0.89312 1.46011 0.91711 1.19129 0.85589 0.93950 0.99636 1.21978 0.91292 0.94474 0.97260 1.68581 1.08557 1.38248 1.02891 1.23547 0.97151 0.98408 0.92668 1.22967 0.94100 0.99811 0.95882 0.87365 1.21572 0.96277 0.98096 0.97324 1.21935 0.99914 0.98591 0.94563 1.22018 0.94746 0.99055 0.97965 1.24350 0.94970 0.93982 0.96675 0.89095 1.22695 1.06871 0.99290 0.94346 1.22695 1.07036 0.98896 0.94146 0.93821 0.92439 0.94917 0.91882 0.92074 0.89614 0.92937 0.90376 0.94250 0.93268 0.89299 0.90186 0.91972 0.92429 0.90432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.40 8.59 21.45 0.18 -53.21 16 2 C 0.00 0.06 5.28 84.65 0.45 0.51 16 3 Si 0.95 45.63 29.54 68.60 2.03 47.66 16 4 H -0.28 -13.27 7.11 99.48 0.71 -12.57 16 5 H -0.29 -13.62 7.11 99.48 0.71 -12.92 16 6 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 7 C -0.46 -25.71 8.70 25.60 0.22 -25.49 16 8 H 0.06 3.69 7.22 -2.91 -0.02 3.67 16 9 C 0.02 0.90 2.52 -52.93 -0.13 0.77 16 10 C 0.08 3.28 4.96 86.30 0.43 3.71 16 11 N -0.46 -17.58 4.50 -877.63 -3.95 -21.53 16 12 C 0.01 0.38 7.34 85.06 0.62 1.01 16 13 C -0.11 -2.80 4.99 -10.47 -0.05 -2.85 16 14 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 15 C -0.10 -2.35 6.40 30.88 0.20 -2.15 16 16 C -0.11 -2.99 6.52 31.19 0.20 -2.79 16 17 C -0.10 -2.65 6.65 31.41 0.21 -2.44 16 18 C 0.01 0.27 4.34 44.40 0.19 0.46 16 19 H 0.09 2.39 7.97 -2.38 -0.02 2.37 16 20 C -0.19 -9.98 9.38 30.60 0.29 -9.70 16 21 C -0.19 -9.79 9.31 30.60 0.28 -9.51 16 22 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 23 H 0.06 2.35 8.08 -2.38 -0.02 2.33 16 24 H 0.03 1.27 7.06 -2.39 -0.02 1.25 16 25 H 0.06 2.02 7.38 -2.38 -0.02 2.00 16 26 H 0.06 2.26 8.00 -2.39 -0.02 2.25 16 27 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 28 H 0.05 1.45 7.92 -2.39 -0.02 1.43 16 29 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.08 4.62 6.29 -2.39 -0.02 4.61 16 34 H 0.06 2.84 8.14 -2.38 -0.02 2.83 16 35 H 0.06 2.66 8.05 -2.39 -0.02 2.64 16 36 H 0.08 4.51 6.27 -2.39 -0.01 4.49 16 Total: -1.00 -61.85 279.88 2.21 -59.65 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: 1.03 Total: 15.90 kcal Atomic # 6 Polarization: -51.38 SS G_CDS: 2.91 Total: -48.47 kcal Atomic # 7 Polarization: -70.97 SS G_CDS: -3.76 Total: -74.74 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.66 kcal Total: -61.85 2.21 -59.65 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602792961.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.208 kcal (2) G-P(sol) polarization free energy of solvation -61.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.646 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds