Wall clock time and date at job start Mon Mar 30 2020 03:23:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 120.00035 * 2 1 4 4 H 1.48493 * 109.47178 * 270.00328 * 3 2 1 5 5 H 1.48502 * 109.46741 * 30.00491 * 3 2 1 6 6 H 1.48501 * 109.46994 * 149.99944 * 3 2 1 7 7 C 1.37883 * 120.00101 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99769 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99951 * 359.97438 * 7 2 1 10 10 C 1.52998 * 115.55046 * 180.02562 * 9 7 2 11 11 N 1.46907 * 109.47000 * 34.41748 * 10 9 7 12 12 C 1.50994 * 110.99716 * 91.52601 * 11 10 9 13 13 C 1.50008 * 80.44429 * 155.76907 * 12 11 10 14 14 H 1.08993 * 114.11858 * 71.57964 * 13 12 11 15 15 C 1.51797 * 128.97573 * 228.77443 * 13 12 11 16 16 C 1.56205 * 101.53150 * 132.06185 * 15 13 12 17 17 C 1.55762 * 104.77529 * 333.66118 * 16 15 13 18 18 C 1.43031 * 111.06374 * 183.70165 * 11 10 9 19 19 H 1.08996 * 111.26388 * 318.73751 * 18 11 10 20 20 C 1.52999 * 117.49680 * 325.67277 * 9 7 2 21 21 C 1.52999 * 117.49696 * 34.33129 * 9 7 2 22 22 H 0.96997 * 120.00155 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.47122 * 274.41898 * 10 9 7 24 24 H 1.09002 * 109.46963 * 154.41463 * 10 9 7 25 25 H 1.09002 * 114.70434 * 42.87313 * 12 11 10 26 26 H 1.08998 * 114.69917 * 268.66455 * 12 11 10 27 27 H 1.08999 * 111.01237 * 250.11773 * 15 13 12 28 28 H 1.08994 * 111.01993 * 13.95678 * 15 13 12 29 29 H 1.08995 * 110.37746 * 92.48484 * 16 15 13 30 30 H 1.08999 * 110.37742 * 214.72560 * 16 15 13 31 31 H 1.08998 * 110.46564 * 110.02380 * 17 16 15 32 32 H 1.09004 * 110.46203 * 232.47914 * 17 16 15 33 33 H 1.09000 * 117.49763 * 215.00153 * 20 9 7 34 34 H 1.09003 * 117.50258 * 0.02562 * 20 9 7 35 35 H 1.09003 * 117.50319 * 359.97438 * 21 9 7 36 36 H 1.09001 * 117.49670 * 144.97640 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.1166 -3.7609 -0.0005 11 7 3.3358 -3.5183 0.7823 12 6 3.1395 -3.9146 2.2261 13 6 4.6319 -4.0358 2.1352 14 1 5.1530 -3.0810 2.0666 15 6 5.5257 -5.1797 2.5791 16 6 6.4320 -5.3738 1.3218 17 6 5.5727 -4.8583 0.1293 18 6 4.2110 -4.6486 0.7343 19 1 3.6554 -5.5825 0.8184 20 6 -0.0724 -2.5508 0.7653 21 6 -0.0730 -2.5505 -0.7654 22 1 -0.4850 0.8400 0.0004 23 1 2.3874 -4.0157 -1.0252 24 1 1.5577 -4.5848 0.4433 25 1 2.6138 -4.8582 2.3721 26 1 2.7863 -3.1128 2.8745 27 1 6.1191 -4.8972 3.4487 28 1 4.9408 -6.0767 2.7823 29 1 7.3434 -4.7834 1.4160 30 1 6.6756 -6.4279 1.1886 31 1 5.9820 -3.9262 -0.2605 32 1 5.5234 -5.6105 -0.6581 33 1 -0.3266 -3.4835 1.2687 34 1 -0.3984 -1.6406 1.2688 35 1 -0.3994 -1.6401 -1.2683 36 1 -0.3273 -3.4829 -1.2694 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602792967.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:47 Heat of formation + Delta-G solvation = 98.205611 kcal Electronic energy + Delta-G solvation = -15602.174465 eV Core-core repulsion = 13282.631303 eV Total energy + Delta-G solvation = -2319.543162 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 221.148 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.45593 -38.45358 -35.58509 -33.54886 -30.67447 -28.91588 -27.42652 -25.13683 -24.41246 -22.66859 -21.53096 -20.60487 -20.31833 -17.88062 -16.91397 -16.27036 -15.93026 -15.69885 -15.57160 -15.05347 -14.83187 -14.40391 -13.38933 -13.09325 -12.97315 -12.93008 -12.55429 -12.29156 -12.16587 -12.08022 -11.94024 -11.89010 -11.58997 -11.34473 -11.25812 -10.77774 -10.39561 -10.04273 -9.86112 -9.64949 -7.94886 -6.02293 1.41161 1.42361 1.53346 2.46628 2.54413 3.08009 3.46636 3.80453 3.90246 4.03967 4.18664 4.31211 4.36773 4.43227 4.49855 4.55828 4.69859 4.76956 4.79154 4.88812 4.93462 5.03243 5.09555 5.15694 5.19131 5.27128 5.34106 5.36889 5.49835 5.57508 5.66694 5.68386 5.99978 6.19672 6.34579 6.62040 7.01923 7.53839 8.99975 Molecular weight = 221.15amu Principal moments of inertia in cm(-1) A = 0.032101 B = 0.008688 C = 0.007593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.033354 B = 3221.909586 C = 3686.522262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.002 3.998 3 Si 0.955 3.045 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.271 1.271 7 C -0.460 4.460 8 H 0.063 0.937 9 C 0.018 3.982 10 C 0.062 3.938 11 N -0.437 5.437 12 C 0.019 3.981 13 C -0.118 4.118 14 H 0.092 0.908 15 C -0.100 4.100 16 C -0.109 4.109 17 C -0.096 4.096 18 C -0.034 4.034 19 H 0.069 0.931 20 C -0.187 4.187 21 C -0.196 4.196 22 H 0.253 0.747 23 H 0.052 0.948 24 H 0.034 0.966 25 H 0.084 0.916 26 H 0.070 0.930 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.056 0.944 32 H 0.068 0.932 33 H 0.059 0.941 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.276 -11.012 4.121 15.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.196 4.196 3 Si 0.781 3.219 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.195 1.195 7 C -0.498 4.498 8 H 0.081 0.919 9 C 0.017 3.983 10 C -0.066 4.066 11 N -0.159 5.159 12 C -0.109 4.109 13 C -0.137 4.137 14 H 0.110 0.890 15 C -0.138 4.138 16 C -0.147 4.147 17 C -0.135 4.135 18 C -0.144 4.144 19 H 0.087 0.913 20 C -0.225 4.225 21 C -0.234 4.234 22 H 0.063 0.937 23 H 0.070 0.930 24 H 0.053 0.947 25 H 0.102 0.898 26 H 0.089 0.911 27 H 0.095 0.905 28 H 0.094 0.906 29 H 0.093 0.907 30 H 0.103 0.897 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.077 0.923 34 H 0.097 0.903 35 H 0.099 0.901 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 10.343 -10.184 3.859 15.019 hybrid contribution -0.767 0.479 -0.249 0.938 sum 9.575 -9.706 3.610 14.104 Atomic orbital electron populations 1.70184 1.06784 1.26006 1.51967 1.25769 0.95749 1.02183 0.95856 0.85603 0.78687 0.79750 0.77823 1.20657 1.21314 1.19544 1.20865 0.93114 0.89401 1.46445 0.91891 1.19097 0.85623 0.93798 0.99783 1.22138 0.92383 0.94716 0.97378 1.70084 1.08881 1.34024 1.02862 1.23754 0.95897 0.99988 0.91275 1.23511 0.93988 0.99206 0.96977 0.89000 1.21948 0.97243 0.96704 0.97946 1.22928 0.97750 1.01936 0.92053 1.21495 0.92492 1.01035 0.98439 1.23969 0.96306 0.93500 1.00615 0.91340 1.22709 1.06804 0.99023 0.94002 1.22722 1.06922 0.99287 0.94499 0.93725 0.92990 0.94734 0.89789 0.91096 0.90491 0.90579 0.90691 0.89716 0.92476 0.91357 0.92251 0.90287 0.90104 0.92091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.28 8.59 21.45 0.18 -53.09 16 2 C 0.00 0.09 5.28 84.66 0.45 0.54 16 3 Si 0.95 45.53 29.54 68.60 2.03 47.56 16 4 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 5 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 6 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 7 C -0.46 -26.11 8.70 25.60 0.22 -25.88 16 8 H 0.06 3.62 7.22 -2.91 -0.02 3.59 16 9 C 0.02 0.91 2.52 -52.93 -0.13 0.78 16 10 C 0.06 2.65 4.93 86.30 0.43 3.07 16 11 N -0.44 -17.15 4.87 ******* -6.01 -23.16 16 12 C 0.02 0.62 7.63 73.90 0.56 1.18 16 13 C -0.12 -3.34 4.41 -8.50 -0.04 -3.37 16 14 H 0.09 2.97 8.11 -2.39 -0.02 2.95 16 15 C -0.10 -2.01 6.64 31.31 0.21 -1.81 16 16 C -0.11 -2.02 6.99 32.66 0.23 -1.80 16 17 C -0.10 -2.40 6.65 30.73 0.20 -2.20 16 18 C -0.03 -1.03 3.74 36.20 0.14 -0.90 16 19 H 0.07 1.96 7.37 -2.39 -0.02 1.94 16 20 C -0.19 -9.68 9.31 30.62 0.29 -9.39 16 21 C -0.20 -10.19 9.39 30.62 0.29 -9.90 16 22 H 0.25 14.31 8.31 -92.71 -0.77 13.53 16 23 H 0.05 2.22 8.13 -2.39 -0.02 2.20 16 24 H 0.03 1.37 7.37 -2.39 -0.02 1.35 16 25 H 0.08 2.47 7.39 -2.39 -0.02 2.46 16 26 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 27 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.07 1.53 8.14 -2.38 -0.02 1.51 16 33 H 0.06 2.73 8.05 -2.39 -0.02 2.71 16 34 H 0.08 4.57 6.28 -2.39 -0.01 4.55 16 35 H 0.08 4.70 6.28 -2.39 -0.01 4.68 16 36 H 0.06 2.83 8.14 -2.39 -0.02 2.81 16 Total: -1.00 -61.97 280.16 0.07 -61.91 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: 1.03 Total: 16.47 kcal Atomic # 6 Polarization: -52.52 SS G_CDS: 2.84 Total: -49.68 kcal Atomic # 7 Polarization: -70.42 SS G_CDS: -5.83 Total: -76.25 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Total: -61.97 0.07 -61.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602792967.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.111 kcal (2) G-P(sol) polarization free energy of solvation -61.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.905 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds