Wall clock time and date at job start Mon Mar 30 2020 03:23:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00299 * 2 1 4 4 H 1.48504 * 109.46797 * 269.99541 * 3 2 1 5 5 H 1.48502 * 109.46957 * 29.99267 * 3 2 1 6 6 H 1.48492 * 109.47380 * 149.99545 * 3 2 1 7 7 C 1.37878 * 119.99524 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99935 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00467 * 0.02562 * 7 2 1 10 10 C 1.52998 * 115.55254 * 179.97438 * 9 7 2 11 11 N 1.46896 * 109.46916 * 34.33067 * 10 9 7 12 12 C 1.49093 * 111.05092 * 263.32759 * 11 10 9 13 13 C 1.49662 * 79.61034 * 203.20813 * 12 11 10 14 14 H 1.09003 * 113.33866 * 291.47186 * 13 12 11 15 15 C 1.50826 * 130.56310 * 135.32264 * 13 12 11 16 16 C 1.55831 * 104.20333 * 236.14320 * 15 13 12 17 17 C 1.56231 * 104.73473 * 8.82669 * 16 15 13 18 18 C 1.43261 * 110.99818 * 170.00145 * 11 10 9 19 19 H 1.08998 * 113.29890 * 46.25893 * 18 11 10 20 20 C 1.53000 * 117.51601 * 325.70807 * 9 7 2 21 21 C 1.52998 * 60.00463 * 107.47661 * 20 9 7 22 22 H 0.96999 * 119.99735 * 0.02562 * 1 2 3 23 23 H 1.09006 * 109.46896 * 274.33480 * 10 9 7 24 24 H 1.08999 * 109.47236 * 154.33778 * 10 9 7 25 25 H 1.08997 * 114.44639 * 90.60849 * 12 11 10 26 26 H 1.09006 * 115.46249 * 315.79953 * 12 11 10 27 27 H 1.09000 * 110.49028 * 354.81584 * 15 13 12 28 28 H 1.08996 * 110.49114 * 117.33346 * 15 13 12 29 29 H 1.09003 * 110.40966 * 250.01841 * 16 15 13 30 30 H 1.09000 * 110.39322 * 127.63453 * 16 15 13 31 31 H 1.09002 * 111.00268 * 268.20150 * 17 16 15 32 32 H 1.09002 * 110.99903 * 144.39661 * 17 16 15 33 33 H 1.09006 * 117.49487 * 214.96263 * 20 9 7 34 34 H 1.08990 * 117.50262 * 359.97438 * 20 9 7 35 35 H 1.09000 * 117.49833 * 252.51124 * 21 20 9 36 36 H 1.08999 * 117.50095 * 107.48380 * 21 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0462 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.1164 -3.7609 0.0005 11 7 3.3365 -3.5177 0.7816 12 6 4.4736 -3.1390 -0.1053 13 6 5.2198 -3.6590 1.0832 14 1 5.1223 -3.0260 1.9652 15 6 6.4110 -4.5803 1.1672 16 6 5.9274 -5.7486 2.0780 17 6 4.3950 -5.5036 2.2584 18 6 4.0584 -4.7359 0.9988 19 1 4.1634 -5.3412 0.0983 20 6 -0.0736 -2.5506 0.7645 21 6 -0.0726 -2.5507 -0.7654 22 1 -0.4850 0.8401 -0.0004 23 1 2.3860 -4.0166 -1.0243 24 1 1.5581 -4.5845 0.4456 25 1 4.5756 -2.0672 -0.2751 26 1 4.5818 -3.7376 -1.0098 27 1 6.6758 -4.9528 0.1777 28 1 7.2592 -4.0670 1.6202 29 1 6.4334 -5.7130 3.0428 30 1 6.1036 -6.7078 1.5912 31 1 4.1972 -4.9031 3.1464 32 1 3.8506 -6.4471 2.2982 33 1 -0.3285 -3.4835 1.2676 34 1 -0.4001 -1.6406 1.2677 35 1 -0.3984 -1.6406 -1.2690 36 1 -0.3267 -3.4835 -1.2689 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602792970.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:52 Heat of formation + Delta-G solvation = 102.301390 kcal Electronic energy + Delta-G solvation = -15630.984196 eV Core-core repulsion = 13311.618641 eV Total energy + Delta-G solvation = -2319.365555 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 221.148 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.62589 -38.44535 -35.64408 -33.58638 -30.55291 -29.00153 -27.53445 -25.14331 -24.38427 -22.65447 -21.45113 -20.78695 -20.30227 -17.83831 -16.98123 -16.29101 -15.79610 -15.70804 -15.67000 -15.10718 -14.79494 -14.37596 -13.41055 -13.22151 -12.94532 -12.82788 -12.60046 -12.35686 -12.16000 -12.00053 -11.93861 -11.89069 -11.55349 -11.27175 -11.21338 -10.76485 -10.28313 -10.11660 -9.82856 -9.69454 -7.94683 -6.02945 1.41327 1.43062 1.52899 2.45983 2.52940 3.09005 3.47019 3.78667 3.91176 4.07363 4.16739 4.32864 4.41105 4.43734 4.52042 4.52681 4.72991 4.76467 4.85347 4.93133 4.95397 5.05495 5.06887 5.13542 5.18805 5.26535 5.34077 5.35014 5.52301 5.58905 5.64682 5.77611 6.00065 6.19484 6.34243 6.57396 7.00272 7.53021 9.00445 Molecular weight = 221.15amu Principal moments of inertia in cm(-1) A = 0.032829 B = 0.008918 C = 0.007491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.704278 B = 3139.138695 C = 3737.016145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.001 3.999 3 Si 0.954 3.046 4 H -0.277 1.277 5 H -0.291 1.291 6 H -0.268 1.268 7 C -0.469 4.469 8 H 0.074 0.926 9 C 0.020 3.980 10 C 0.059 3.941 11 N -0.432 5.432 12 C 0.019 3.981 13 C -0.124 4.124 14 H 0.085 0.915 15 C -0.103 4.103 16 C -0.108 4.108 17 C -0.089 4.089 18 C -0.041 4.041 19 H 0.075 0.925 20 C -0.191 4.191 21 C -0.194 4.194 22 H 0.253 0.747 23 H 0.037 0.963 24 H 0.051 0.949 25 H 0.075 0.925 26 H 0.084 0.916 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.060 0.940 32 H 0.069 0.931 33 H 0.055 0.945 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.803 -10.214 1.644 15.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.196 4.196 3 Si 0.781 3.219 4 H -0.203 1.203 5 H -0.217 1.217 6 H -0.192 1.192 7 C -0.507 4.507 8 H 0.092 0.908 9 C 0.019 3.981 10 C -0.068 4.068 11 N -0.153 5.153 12 C -0.109 4.109 13 C -0.144 4.144 14 H 0.103 0.897 15 C -0.141 4.141 16 C -0.146 4.146 17 C -0.127 4.127 18 C -0.151 4.151 19 H 0.093 0.907 20 C -0.229 4.229 21 C -0.232 4.232 22 H 0.062 0.938 23 H 0.055 0.945 24 H 0.069 0.931 25 H 0.093 0.907 26 H 0.102 0.898 27 H 0.092 0.908 28 H 0.092 0.908 29 H 0.099 0.901 30 H 0.100 0.900 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.073 0.927 34 H 0.096 0.904 35 H 0.100 0.900 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 11.400 -9.658 2.215 15.104 hybrid contribution -0.462 0.715 -0.756 1.139 sum 10.938 -8.943 1.458 14.203 Atomic orbital electron populations 1.70203 1.06954 1.25988 1.51802 1.25801 0.95744 1.02330 0.95774 0.85608 0.78734 0.79664 0.77930 1.20334 1.21663 1.19244 1.21078 0.93552 0.89360 1.46714 0.90849 1.19113 0.85774 0.93862 0.99335 1.22171 0.93663 0.95428 0.95566 1.69708 0.99507 1.16132 1.29972 1.23540 0.91527 1.01574 0.94263 1.23381 0.94887 0.97589 0.98495 0.89686 1.21637 0.96300 0.95470 1.00737 1.22958 0.92847 0.98472 1.00313 1.21749 0.96871 0.98935 0.95160 1.24334 0.97559 0.93485 0.99710 0.90736 1.22668 1.07266 0.98805 0.94151 1.22718 1.07003 0.99253 0.94245 0.93779 0.94474 0.93077 0.90669 0.89784 0.90814 0.90812 0.90114 0.89962 0.92110 0.91253 0.92682 0.90441 0.90033 0.92114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.38 8.59 21.45 0.18 -53.20 16 2 C 0.00 0.04 5.28 84.65 0.45 0.49 16 3 Si 0.95 44.72 29.54 68.60 2.03 46.75 16 4 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 5 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 6 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 7 C -0.47 -25.99 8.62 25.60 0.22 -25.77 16 8 H 0.07 3.92 4.77 -2.91 -0.01 3.91 16 9 C 0.02 1.03 2.52 -52.93 -0.13 0.89 16 10 C 0.06 2.55 5.12 86.30 0.44 2.99 16 11 N -0.43 -16.90 5.18 ******* -6.66 -23.56 16 12 C 0.02 0.64 6.70 75.07 0.50 1.14 16 13 C -0.12 -3.59 4.24 -8.05 -0.03 -3.62 16 14 H 0.08 2.82 8.03 -2.39 -0.02 2.80 16 15 C -0.10 -2.12 6.65 30.87 0.21 -1.92 16 16 C -0.11 -1.97 7.00 32.70 0.23 -1.74 16 17 C -0.09 -2.17 6.64 31.16 0.21 -1.97 16 18 C -0.04 -1.25 3.96 37.31 0.15 -1.10 16 19 H 0.07 2.11 7.45 -2.39 -0.02 2.09 16 20 C -0.19 -10.16 9.31 30.59 0.28 -9.88 16 21 C -0.19 -10.12 9.38 30.60 0.29 -9.83 16 22 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 23 H 0.04 1.51 7.57 -2.38 -0.02 1.49 16 24 H 0.05 2.11 7.83 -2.39 -0.02 2.09 16 25 H 0.07 2.86 6.36 -2.39 -0.02 2.84 16 26 H 0.08 2.54 7.40 -2.38 -0.02 2.52 16 27 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.05 2.67 8.05 -2.38 -0.02 2.65 16 34 H 0.08 4.60 6.28 -2.39 -0.02 4.59 16 35 H 0.08 4.73 6.28 -2.39 -0.02 4.71 16 36 H 0.06 2.83 8.14 -2.39 -0.02 2.81 16 Total: -1.00 -61.71 275.36 -0.60 -62.31 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: 1.04 Total: 18.01 kcal Atomic # 6 Polarization: -53.11 SS G_CDS: 2.81 Total: -50.31 kcal Atomic # 7 Polarization: -70.28 SS G_CDS: -6.48 Total: -76.76 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -61.71 -0.60 -62.31 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602792970.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.610 kcal (2) G-P(sol) polarization free energy of solvation -61.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds