Wall clock time and date at job start Mon Mar 30 2020 02:47:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34507 * 125.67057 * 2 1 4 4 C 1.39278 * 107.18403 * 179.97438 * 3 2 1 5 5 C 1.41603 * 126.55708 * 180.02562 * 4 3 2 6 6 H 1.08001 * 120.00145 * 179.97438 * 5 4 3 7 7 C 1.39692 * 119.99665 * 359.97438 * 5 4 3 8 8 N 1.31032 * 120.00330 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99829 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.46961 * 89.99654 * 9 7 5 11 11 H 1.48498 * 109.46903 * 209.99770 * 9 7 5 12 12 H 1.48499 * 109.46965 * 330.00122 * 9 7 5 13 13 C 1.41884 * 106.89022 * 0.02562 * 4 3 2 14 14 C 1.50697 * 125.98094 * 180.02562 * 13 4 3 15 15 N 1.46893 * 109.47311 * 89.99634 * 14 13 4 16 16 C 1.47486 * 110.99866 * 170.00074 * 15 14 13 17 17 C 1.53506 * 87.93221 * 221.29388 * 16 15 14 18 18 C 1.47474 * 111.00100 * 74.03236 * 15 14 13 19 19 N 1.30323 * 108.03980 * 0.25785 * 13 4 3 20 20 H 1.09001 * 109.46918 * 90.00531 * 1 2 3 21 21 H 1.09002 * 109.46720 * 209.99315 * 1 2 3 22 22 H 1.08992 * 109.47253 * 330.00072 * 1 2 3 23 23 H 1.07996 * 126.40945 * 359.97438 * 3 2 1 24 24 H 0.96995 * 120.00391 * 179.97438 * 8 7 5 25 25 H 1.09003 * 109.46692 * 329.99089 * 14 13 4 26 26 H 1.09004 * 109.46773 * 210.00063 * 14 13 4 27 27 H 1.09000 * 113.47378 * 336.06597 * 16 15 14 28 28 H 1.08999 * 113.47621 * 106.52788 * 16 15 14 29 29 H 1.09001 * 114.16921 * 139.66754 * 17 16 15 30 30 H 1.09003 * 114.17533 * 272.37734 * 17 16 15 31 31 H 1.09008 * 113.47506 * 253.46575 * 18 15 14 32 32 H 1.08998 * 113.48033 * 23.93349 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2494 1.0927 0.0000 4 6 3.5703 0.6511 0.0006 5 6 4.7309 1.4624 0.0013 6 1 5.7093 1.0053 0.0022 7 6 4.6101 2.8541 0.0009 8 7 3.4230 3.4088 -0.0006 9 14 6.1411 3.9244 0.0012 10 1 6.5472 4.2076 -1.3989 11 1 5.8517 5.2019 0.7007 12 1 7.2412 3.2145 0.7017 13 6 3.5308 -0.7672 0.0003 14 6 4.7251 -1.6862 0.0013 15 7 5.1119 -1.9850 1.3866 16 6 6.1189 -3.0615 1.4336 17 6 5.3648 -3.6383 2.6398 18 6 4.1608 -2.9238 2.0102 19 7 2.2809 -1.1361 -0.0059 20 1 -0.3633 -0.0001 -1.0277 21 1 -0.3633 -0.8901 0.5137 22 1 -0.3633 0.8899 0.5138 23 1 1.9171 2.1203 -0.0004 24 1 3.3391 4.3751 -0.0005 25 1 5.5562 -1.2023 -0.5118 26 1 4.4707 -2.6130 -0.5129 27 1 6.1008 -3.7115 0.5588 28 1 7.1211 -2.7084 1.6765 29 1 5.2883 -4.7257 2.6400 30 1 5.6763 -3.2264 3.5997 31 1 3.5034 -2.4539 2.7418 32 1 3.6201 -3.5370 1.2893 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000675056034.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:53 Heat of formation + Delta-G solvation = 88.690444 kcal Electronic energy + Delta-G solvation = -15010.316794 eV Core-core repulsion = 12586.820680 eV Total energy + Delta-G solvation = -2423.496114 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.37267 -40.42393 -35.42996 -34.21889 -31.30535 -30.51781 -28.04481 -26.72306 -26.27927 -24.47024 -21.63430 -20.67374 -20.04543 -18.74257 -17.24323 -16.81278 -16.65873 -16.02694 -15.66536 -15.36997 -14.72012 -14.42478 -13.62928 -13.46199 -13.31644 -13.12669 -13.03871 -12.81721 -12.72550 -12.28936 -12.12666 -11.80365 -11.59388 -11.45595 -11.10963 -10.79595 -9.77604 -9.50335 -9.01172 -8.31514 -5.96183 1.39299 1.43917 1.51047 1.57123 2.22911 2.30920 2.41174 3.26902 3.58933 3.66620 3.96994 4.06986 4.20399 4.39084 4.48590 4.54207 4.57380 4.68070 4.71608 4.84219 4.87251 4.99090 5.04084 5.29949 5.38438 5.45756 5.66663 5.90546 6.02716 6.22882 6.52005 6.95135 7.16082 7.22206 7.51925 8.70742 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.021025 B = 0.011022 C = 0.007628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.442594 B = 2539.750748 C = 3669.872862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.112 3.888 2 N -0.397 5.397 3 C -0.072 4.072 4 C -0.069 4.069 5 C -0.444 4.444 6 H 0.064 0.936 7 C 0.009 3.991 8 N -0.873 5.873 9 Si 0.983 3.017 10 H -0.269 1.269 11 H -0.275 1.275 12 H -0.266 1.266 13 C 0.007 3.993 14 C 0.131 3.869 15 N -0.492 5.492 16 C -0.003 4.003 17 C -0.125 4.125 18 C 0.004 3.996 19 N -0.338 5.338 20 H 0.070 0.930 21 H 0.086 0.914 22 H 0.089 0.911 23 H 0.182 0.818 24 H 0.275 0.725 25 H 0.078 0.922 26 H 0.051 0.949 27 H 0.080 0.920 28 H 0.090 0.910 29 H 0.101 0.899 30 H 0.092 0.908 31 H 0.053 0.947 32 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.985 -8.546 2.106 8.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.029 4.029 2 N -0.186 5.186 3 C -0.215 4.215 4 C -0.079 4.079 5 C -0.479 4.479 6 H 0.083 0.917 7 C -0.196 4.196 8 N -0.507 5.507 9 Si 0.806 3.194 10 H -0.194 1.194 11 H -0.200 1.200 12 H -0.190 1.190 13 C -0.159 4.159 14 C 0.001 3.999 15 N -0.215 5.215 16 C -0.131 4.131 17 C -0.163 4.163 18 C -0.125 4.125 19 N -0.164 5.164 20 H 0.088 0.912 21 H 0.105 0.895 22 H 0.107 0.893 23 H 0.199 0.801 24 H 0.085 0.915 25 H 0.096 0.904 26 H 0.069 0.931 27 H 0.099 0.901 28 H 0.108 0.892 29 H 0.120 0.880 30 H 0.111 0.889 31 H 0.071 0.929 32 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.100 -8.586 2.357 8.904 hybrid contribution 0.513 0.957 -0.624 1.252 sum 0.613 -7.629 1.733 7.847 Atomic orbital electron populations 1.21741 0.74194 1.04109 1.02900 1.48015 1.06394 1.03451 1.60695 1.23837 0.91060 0.92405 1.14170 1.18382 0.93639 0.90909 1.04922 1.18948 0.92460 0.91059 1.45444 0.91728 1.26391 0.99930 0.99339 0.93962 1.69521 1.24801 1.11801 1.44543 0.85161 0.78281 0.77210 0.78707 1.19436 1.20018 1.18989 1.22305 0.92536 0.94496 1.06527 1.20565 0.92629 0.95367 0.91318 1.69033 1.07656 1.29990 1.14866 1.23860 0.97900 0.92457 0.98910 1.23057 0.94291 1.00965 0.97980 1.23637 0.96341 0.93938 0.98576 1.76148 1.02276 1.10482 1.27467 0.91185 0.89528 0.89285 0.80131 0.91516 0.90371 0.93119 0.90145 0.89204 0.88045 0.88903 0.92882 0.91560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 3.84 11.44 127.77 1.46 5.30 16 2 N -0.40 -19.22 3.98 -366.48 -1.46 -20.68 16 3 C -0.07 -3.97 10.46 84.53 0.88 -3.09 16 4 C -0.07 -3.96 5.94 -21.30 -0.13 -4.08 16 5 C -0.44 -25.70 9.15 23.45 0.21 -25.48 16 6 H 0.06 3.65 7.37 -2.91 -0.02 3.63 16 7 C 0.01 0.48 5.49 85.16 0.47 0.95 16 8 N -0.87 -48.40 10.33 21.79 0.23 -48.17 16 9 Si 0.98 42.38 29.56 68.60 2.03 44.41 16 10 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 11 H -0.28 -11.38 7.11 99.48 0.71 -10.67 16 12 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 13 C 0.01 0.37 6.42 43.68 0.28 0.65 16 14 C 0.13 5.54 5.19 85.56 0.44 5.99 16 15 N -0.49 -18.93 6.40 -932.67 -5.97 -24.91 16 16 C 0.00 -0.08 7.70 83.57 0.64 0.57 16 17 C -0.13 -3.04 8.47 30.94 0.26 -2.78 16 18 C 0.00 0.15 7.30 83.57 0.61 0.76 16 19 N -0.34 -16.87 12.47 -46.36 -0.58 -17.45 16 20 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 21 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 22 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16 23 H 0.18 10.28 5.75 -2.91 -0.02 10.26 16 24 H 0.27 14.00 8.30 -92.71 -0.77 13.23 16 25 H 0.08 3.36 7.61 -2.39 -0.02 3.34 16 26 H 0.05 1.93 7.56 -2.38 -0.02 1.91 16 27 H 0.08 1.93 7.77 -2.39 -0.02 1.91 16 28 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 29 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 31 H 0.05 1.98 8.14 -2.38 -0.02 1.96 16 32 H 0.07 2.19 7.70 -2.39 -0.02 2.17 16 Total: -1.00 -68.11 270.69 0.49 -67.62 By element: Atomic # 1 Polarization: 19.31 SS G_CDS: 1.10 Total: 20.41 kcal Atomic # 6 Polarization: -26.37 SS G_CDS: 5.14 Total: -21.23 kcal Atomic # 7 Polarization: -103.43 SS G_CDS: -7.78 Total: -111.21 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.41 kcal Total: -68.11 0.49 -67.62 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000675056034.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.311 kcal (2) G-P(sol) polarization free energy of solvation -68.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.621 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds