Wall clock time and date at job start Mon Mar 30 2020 03:22:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 120.00180 * 2 1 4 4 H 1.48501 * 109.47218 * 239.72770 * 3 2 1 5 5 H 1.48504 * 109.47224 * 359.72676 * 3 2 1 6 6 H 1.48495 * 109.47562 * 119.72629 * 3 2 1 7 7 C 1.37881 * 119.99753 * 179.72814 * 2 1 3 8 8 H 1.08001 * 119.99757 * 195.06755 * 7 2 1 9 9 C 1.50692 * 120.00184 * 15.07055 * 7 2 1 10 10 C 1.53003 * 115.55107 * 40.06462 * 9 7 2 11 11 N 1.46894 * 109.47423 * 66.20469 * 10 9 7 12 12 C 1.50042 * 111.00387 * 281.00926 * 11 10 9 13 13 C 1.51710 * 101.84556 * 211.53423 * 12 11 10 14 14 H 1.09004 * 113.02419 * 290.62967 * 13 12 11 15 15 C 1.49767 * 129.79546 * 131.98040 * 13 12 11 16 16 C 1.54998 * 80.69730 * 227.28769 * 15 13 12 17 17 C 1.49454 * 81.31932 * 46.45113 * 16 15 13 18 18 H 1.09004 * 113.34322 * 65.72533 * 17 16 15 19 19 C 1.49655 * 111.00218 * 162.84127 * 11 10 9 20 20 C 1.53001 * 117.49844 * 254.35752 * 9 7 2 21 21 C 1.52997 * 117.49976 * 185.73388 * 9 7 2 22 22 H 0.96999 * 119.99825 * 0.27126 * 1 2 3 23 23 H 1.08997 * 109.47180 * 186.21442 * 10 9 7 24 24 H 1.09004 * 109.46689 * 306.20782 * 10 9 7 25 25 H 1.08996 * 110.95471 * 329.67492 * 12 11 10 26 26 H 1.09004 * 110.95351 * 93.39722 * 12 11 10 27 27 H 1.08997 * 114.59320 * 340.85177 * 15 13 12 28 28 H 1.09004 * 114.59211 * 114.75105 * 15 13 12 29 29 H 1.08998 * 114.17032 * 293.25320 * 16 15 13 30 30 H 1.08998 * 114.67606 * 159.66169 * 16 15 13 31 31 H 1.09003 * 110.40174 * 231.24552 * 19 11 10 32 32 H 1.09002 * 110.40272 * 353.66324 * 19 11 10 33 33 H 1.08993 * 117.49919 * 359.97438 * 20 9 7 34 34 H 1.09005 * 117.50059 * 145.02174 * 20 9 7 35 35 H 1.09005 * 117.49957 * 214.98303 * 21 9 7 36 36 H 1.09001 * 117.49955 * 359.97438 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1079 1.6935 -1.2092 5 1 1.2842 2.7465 -0.0067 6 1 3.0979 1.6993 1.2158 7 6 2.0045 -1.1941 0.0057 8 1 3.0567 -1.2090 0.2489 9 6 1.2899 -2.4783 -0.3276 10 6 0.2779 -2.3926 -1.4719 11 7 0.9835 -2.1151 -2.7300 12 6 1.3389 -0.6614 -2.8379 13 6 1.2698 -0.4343 -4.3363 14 1 2.0692 -0.9369 -4.8810 15 6 0.5928 0.6542 -5.1107 16 6 0.0983 -0.5727 -5.9186 17 6 -0.1654 -1.0885 -4.5409 18 1 -0.9372 -0.5302 -4.0111 19 6 0.1186 -2.4284 -3.9104 20 6 0.9721 -3.4301 0.8274 21 6 2.0736 -3.7833 -0.1740 22 1 -0.4850 0.8400 -0.0040 23 1 -0.2565 -3.3388 -1.5559 24 1 -0.4325 -1.5910 -1.2693 25 1 0.6097 -0.0420 -2.3158 26 1 2.3452 -0.4771 -2.4617 27 1 -0.1803 1.1895 -4.5596 28 1 1.2698 1.3090 -5.6595 29 1 0.8860 -1.0988 -6.4579 30 1 -0.7957 -0.3939 -6.5159 31 1 0.6502 -3.0729 -4.6106 32 1 -0.8091 -2.9005 -3.5871 33 1 1.2802 -3.1276 1.8282 34 1 0.0417 -3.9954 0.7723 35 1 1.8681 -4.5809 -0.8879 36 1 3.1063 -3.7129 0.1677 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000688307662.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:27 Heat of formation + Delta-G solvation = 119.686607 kcal Electronic energy + Delta-G solvation = -16073.299815 eV Core-core repulsion = 13754.688139 eV Total energy + Delta-G solvation = -2318.611676 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 221.148 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.83899 -36.83367 -34.07021 -32.18969 -28.11347 -27.51708 -25.50002 -23.03593 -22.84012 -20.98087 -20.29502 -19.39710 -18.87626 -16.07825 -14.97305 -14.67493 -14.37381 -14.12243 -13.79559 -13.35674 -12.75697 -12.42955 -12.02705 -11.65080 -11.46174 -11.25703 -11.12376 -10.82992 -10.68669 -10.61984 -10.38202 -10.19971 -10.13845 -9.88527 -9.18809 -8.99597 -8.55037 -8.45816 -8.06377 -7.18537 -6.03254 -4.00958 3.27908 3.33229 3.38108 4.15354 4.38250 4.73938 4.78172 5.08134 5.08559 5.35192 5.69097 5.76241 5.80255 5.96285 6.01533 6.11222 6.16943 6.24258 6.35787 6.39077 6.45399 6.56469 6.70448 6.73310 6.85778 6.88857 7.01039 7.06501 7.20289 7.28062 7.46593 7.51816 7.86598 8.07409 8.24577 8.52338 8.92603 9.53817 10.97969 Molecular weight = 221.15amu Principal moments of inertia in cm(-1) A = 0.023408 B = 0.013630 C = 0.009661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.888233 B = 2053.801164 C = 2897.671241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.075 3.925 3 Si 0.874 3.126 4 H -0.270 1.270 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.475 4.475 8 H 0.057 0.943 9 C 0.066 3.934 10 C 0.078 3.922 11 N -0.505 5.505 12 C 0.072 3.928 13 C -0.163 4.163 14 H 0.097 0.903 15 C -0.115 4.115 16 C -0.104 4.104 17 C -0.182 4.182 18 H 0.090 0.910 19 C 0.058 3.942 20 C -0.204 4.204 21 C -0.200 4.200 22 H 0.259 0.741 23 H 0.030 0.970 24 H 0.086 0.914 25 H 0.067 0.933 26 H 0.079 0.921 27 H 0.087 0.913 28 H 0.060 0.940 29 H 0.086 0.914 30 H 0.057 0.943 31 H 0.065 0.935 32 H 0.047 0.953 33 H 0.075 0.925 34 H 0.060 0.940 35 H 0.066 0.934 36 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.870 -0.327 -8.701 8.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.126 4.126 3 Si 0.701 3.299 4 H -0.196 1.196 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.512 4.512 8 H 0.075 0.925 9 C 0.065 3.935 10 C -0.050 4.050 11 N -0.228 5.228 12 C -0.055 4.055 13 C -0.182 4.182 14 H 0.115 0.885 15 C -0.153 4.153 16 C -0.141 4.141 17 C -0.201 4.201 18 H 0.109 0.891 19 C -0.070 4.070 20 C -0.243 4.243 21 C -0.237 4.237 22 H 0.070 0.930 23 H 0.048 0.952 24 H 0.104 0.896 25 H 0.085 0.915 26 H 0.098 0.902 27 H 0.105 0.895 28 H 0.079 0.921 29 H 0.105 0.895 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.066 0.934 33 H 0.093 0.907 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.564 -0.550 -8.636 8.671 hybrid contribution -0.288 1.242 0.227 1.295 sum -0.853 0.693 -8.409 8.480 Atomic orbital electron populations 1.69949 1.05844 1.26307 1.49715 1.24862 0.94590 0.98577 0.94586 0.86957 0.80236 0.83640 0.79063 1.19576 1.21252 1.20284 1.20459 0.95150 0.89839 1.45776 0.92457 1.18781 0.94830 0.88473 0.91441 1.21973 0.96037 0.99254 0.87741 1.65510 1.37760 1.18367 1.01200 1.22555 1.02753 0.89077 0.91130 1.23859 0.96329 0.99423 0.98621 0.88523 1.22494 0.99835 0.94979 0.98004 1.22340 1.00446 0.97063 0.94298 1.23708 0.99267 0.99000 0.98144 0.89142 1.22151 0.95854 0.94867 0.94128 1.22931 0.97549 1.07597 0.96178 1.22738 0.95639 1.02232 1.03097 0.93047 0.95191 0.89593 0.91467 0.90245 0.89479 0.92115 0.89525 0.92406 0.91686 0.93401 0.90651 0.92101 0.91529 0.91128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.72 10.23 55.43 0.57 -23.15 16 2 C 0.08 1.98 2.90 -17.82 -0.05 1.93 16 3 Si 0.87 20.55 29.14 -169.99 -4.95 15.59 16 4 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.47 -12.77 7.47 -34.44 -0.26 -13.03 16 8 H 0.06 1.57 7.86 -52.49 -0.41 1.16 16 9 C 0.07 1.64 1.91 -155.66 -0.30 1.35 16 10 C 0.08 1.84 4.55 -3.83 -0.02 1.83 16 11 N -0.50 -10.96 5.29 -231.60 -1.23 -12.19 16 12 C 0.07 1.56 4.29 -2.72 -0.01 1.55 16 13 C -0.16 -2.85 4.42 -106.73 -0.47 -3.33 16 14 H 0.10 1.64 7.52 -51.93 -0.39 1.25 16 15 C -0.12 -1.69 8.04 -42.52 -0.34 -2.04 16 16 C -0.10 -1.39 8.00 -44.65 -0.36 -1.75 16 17 C -0.18 -3.00 4.35 -105.36 -0.46 -3.46 16 18 H 0.09 1.61 7.38 -51.93 -0.38 1.23 16 19 C 0.06 1.05 6.63 -3.40 -0.02 1.02 16 20 C -0.20 -4.81 9.92 -26.73 -0.27 -5.08 16 21 C -0.20 -4.57 9.95 -26.73 -0.27 -4.83 16 22 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 23 H 0.03 0.68 7.68 -51.93 -0.40 0.28 16 24 H 0.09 2.24 5.25 -51.93 -0.27 1.97 16 25 H 0.07 1.60 5.56 -51.93 -0.29 1.31 16 26 H 0.08 1.90 6.96 -51.93 -0.36 1.53 16 27 H 0.09 1.31 7.51 -51.93 -0.39 0.92 16 28 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.09 1.08 7.52 -51.93 -0.39 0.69 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.05 0.86 7.45 -51.93 -0.39 0.47 16 33 H 0.07 1.80 8.14 -51.93 -0.42 1.38 16 34 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 35 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 36 H 0.07 1.59 8.14 -51.93 -0.42 1.17 16 LS Contribution 274.39 15.07 4.14 4.14 Total: -1.00 -26.66 274.39 -10.06 -36.73 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -5.77 Total: 4.72 kcal Atomic # 6 Polarization: -23.02 SS G_CDS: -2.82 Total: -25.84 kcal Atomic # 7 Polarization: -34.68 SS G_CDS: -0.66 Total: -35.34 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -4.95 Total: 15.59 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -26.66 -10.06 -36.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688307662.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.412 kcal (2) G-P(sol) polarization free energy of solvation -26.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.725 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds