Wall clock time and date at job start Mon Mar 30 2020 03:22:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 120.00180 * 2 1 4 4 H 1.48501 * 109.47218 * 239.72770 * 3 2 1 5 5 H 1.48504 * 109.47224 * 359.72676 * 3 2 1 6 6 H 1.48495 * 109.47562 * 119.72629 * 3 2 1 7 7 C 1.37881 * 119.99753 * 179.72814 * 2 1 3 8 8 H 1.08001 * 119.99757 * 195.06755 * 7 2 1 9 9 C 1.50692 * 120.00184 * 15.07055 * 7 2 1 10 10 C 1.53003 * 115.55107 * 40.06462 * 9 7 2 11 11 N 1.46894 * 109.47423 * 66.20469 * 10 9 7 12 12 C 1.50042 * 111.00387 * 281.00926 * 11 10 9 13 13 C 1.51710 * 101.84556 * 211.53423 * 12 11 10 14 14 H 1.09004 * 113.02419 * 290.62967 * 13 12 11 15 15 C 1.49767 * 129.79546 * 131.98040 * 13 12 11 16 16 C 1.54998 * 80.69730 * 227.28769 * 15 13 12 17 17 C 1.49454 * 81.31932 * 46.45113 * 16 15 13 18 18 H 1.09004 * 113.34322 * 65.72533 * 17 16 15 19 19 C 1.49655 * 111.00218 * 162.84127 * 11 10 9 20 20 C 1.53001 * 117.49844 * 254.35752 * 9 7 2 21 21 C 1.52997 * 117.49976 * 185.73388 * 9 7 2 22 22 H 0.96999 * 119.99825 * 0.27126 * 1 2 3 23 23 H 1.08997 * 109.47180 * 186.21442 * 10 9 7 24 24 H 1.09004 * 109.46689 * 306.20782 * 10 9 7 25 25 H 1.08996 * 110.95471 * 329.67492 * 12 11 10 26 26 H 1.09004 * 110.95351 * 93.39722 * 12 11 10 27 27 H 1.08997 * 114.59320 * 340.85177 * 15 13 12 28 28 H 1.09004 * 114.59211 * 114.75105 * 15 13 12 29 29 H 1.08998 * 114.17032 * 293.25320 * 16 15 13 30 30 H 1.08998 * 114.67606 * 159.66169 * 16 15 13 31 31 H 1.09003 * 110.40174 * 231.24552 * 19 11 10 32 32 H 1.09002 * 110.40272 * 353.66324 * 19 11 10 33 33 H 1.08993 * 117.49919 * 359.97438 * 20 9 7 34 34 H 1.09005 * 117.50059 * 145.02174 * 20 9 7 35 35 H 1.09005 * 117.49957 * 214.98303 * 21 9 7 36 36 H 1.09001 * 117.49955 * 359.97438 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1079 1.6935 -1.2092 5 1 1.2842 2.7465 -0.0067 6 1 3.0979 1.6993 1.2158 7 6 2.0045 -1.1941 0.0057 8 1 3.0567 -1.2090 0.2489 9 6 1.2899 -2.4783 -0.3276 10 6 0.2779 -2.3926 -1.4719 11 7 0.9835 -2.1151 -2.7300 12 6 1.3389 -0.6614 -2.8379 13 6 1.2698 -0.4343 -4.3363 14 1 2.0692 -0.9369 -4.8810 15 6 0.5928 0.6542 -5.1107 16 6 0.0983 -0.5727 -5.9186 17 6 -0.1654 -1.0885 -4.5409 18 1 -0.9372 -0.5302 -4.0111 19 6 0.1186 -2.4284 -3.9104 20 6 0.9721 -3.4301 0.8274 21 6 2.0736 -3.7833 -0.1740 22 1 -0.4850 0.8400 -0.0040 23 1 -0.2565 -3.3388 -1.5559 24 1 -0.4325 -1.5910 -1.2693 25 1 0.6097 -0.0420 -2.3158 26 1 2.3452 -0.4771 -2.4617 27 1 -0.1803 1.1895 -4.5596 28 1 1.2698 1.3090 -5.6595 29 1 0.8860 -1.0988 -6.4579 30 1 -0.7957 -0.3939 -6.5159 31 1 0.6502 -3.0729 -4.6106 32 1 -0.8091 -2.9005 -3.5871 33 1 1.2802 -3.1276 1.8282 34 1 0.0417 -3.9954 0.7723 35 1 1.8681 -4.5809 -0.8879 36 1 3.1063 -3.7129 0.1677 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000688307662.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:27 Heat of formation + Delta-G solvation = 104.937582 kcal Electronic energy + Delta-G solvation = -16073.939381 eV Core-core repulsion = 13754.688139 eV Total energy + Delta-G solvation = -2319.251242 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 221.148 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.20492 -38.65859 -35.67244 -34.21834 -29.62607 -29.15202 -27.52231 -24.48705 -24.25635 -22.85239 -21.62353 -20.93768 -20.75545 -18.06117 -16.74742 -16.32633 -15.99614 -15.80937 -15.23732 -15.01719 -14.54423 -13.90108 -13.66181 -13.40708 -13.16741 -12.85872 -12.63943 -12.47915 -12.34732 -12.20110 -12.05104 -11.97762 -11.78732 -11.41213 -11.06973 -10.95552 -10.46168 -9.99858 -9.81086 -8.94511 -8.05911 -6.09599 1.36904 1.40069 1.46242 2.41041 2.79945 2.99477 3.26319 3.62603 3.77948 3.85824 3.99356 4.33854 4.38530 4.55609 4.58728 4.62271 4.73794 4.80870 4.85490 4.98053 5.00156 5.00938 5.04370 5.14142 5.17016 5.23585 5.27434 5.37451 5.47220 5.54819 5.58360 5.60100 5.90676 6.30367 6.47582 6.51032 6.86704 7.47177 8.93093 Molecular weight = 221.15amu Principal moments of inertia in cm(-1) A = 0.023408 B = 0.013630 C = 0.009661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.888233 B = 2053.801164 C = 2897.671241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.050 3.950 3 Si 0.919 3.081 4 H -0.266 1.266 5 H -0.282 1.282 6 H -0.278 1.278 7 C -0.494 4.494 8 H 0.041 0.959 9 C 0.037 3.963 10 C 0.090 3.910 11 N -0.517 5.517 12 C 0.075 3.925 13 C -0.170 4.170 14 H 0.108 0.892 15 C -0.113 4.113 16 C -0.080 4.080 17 C -0.173 4.173 18 H 0.071 0.929 19 C 0.056 3.944 20 C -0.204 4.204 21 C -0.182 4.182 22 H 0.259 0.741 23 H 0.035 0.965 24 H 0.059 0.941 25 H 0.040 0.960 26 H 0.048 0.952 27 H 0.078 0.922 28 H 0.081 0.919 29 H 0.105 0.895 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.047 0.953 33 H 0.065 0.935 34 H 0.074 0.926 35 H 0.083 0.917 36 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.824 -0.373 -10.744 10.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.150 4.150 3 Si 0.744 3.256 4 H -0.190 1.190 5 H -0.208 1.208 6 H -0.204 1.204 7 C -0.531 4.531 8 H 0.060 0.940 9 C 0.036 3.964 10 C -0.039 4.039 11 N -0.240 5.240 12 C -0.052 4.052 13 C -0.189 4.189 14 H 0.126 0.874 15 C -0.151 4.151 16 C -0.118 4.118 17 C -0.193 4.193 18 H 0.089 0.911 19 C -0.071 4.071 20 C -0.243 4.243 21 C -0.219 4.219 22 H 0.068 0.932 23 H 0.054 0.946 24 H 0.077 0.923 25 H 0.059 0.941 26 H 0.067 0.933 27 H 0.097 0.903 28 H 0.100 0.900 29 H 0.123 0.877 30 H 0.099 0.901 31 H 0.102 0.898 32 H 0.065 0.935 33 H 0.084 0.916 34 H 0.092 0.908 35 H 0.101 0.899 36 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.517 -0.601 -10.684 10.714 hybrid contribution -0.291 1.229 0.905 1.554 sum -0.808 0.627 -9.779 9.833 Atomic orbital electron populations 1.70044 1.06717 1.26694 1.50025 1.25270 0.95056 1.00585 0.94067 0.86250 0.79384 0.80922 0.79008 1.19043 1.20765 1.20360 1.20561 0.94564 0.91371 1.46641 0.94038 1.18945 0.96153 0.88643 0.92643 1.21722 0.95205 0.98386 0.88539 1.65446 1.38648 1.18402 1.01500 1.22303 0.99979 0.88893 0.94030 1.23951 0.97355 1.01938 0.95673 0.87399 1.22522 0.99609 0.95354 0.97619 1.22299 1.01814 0.95062 0.92609 1.23692 0.97833 0.97194 1.00543 0.91066 1.22204 0.95577 0.96104 0.93224 1.22919 0.98495 1.07347 0.95513 1.22714 0.95317 1.01288 1.02620 0.93163 0.94613 0.92320 0.94131 0.93321 0.90338 0.90027 0.87683 0.90084 0.89750 0.93483 0.91588 0.90784 0.89895 0.91165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -49.32 10.23 21.45 0.22 -49.10 16 2 C 0.05 2.69 2.90 84.66 0.25 2.94 16 3 Si 0.92 42.66 29.14 68.60 2.00 44.66 16 4 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 5 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 6 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 7 C -0.49 -27.14 7.47 25.60 0.19 -26.95 16 8 H 0.04 2.34 7.86 -2.91 -0.02 2.32 16 9 C 0.04 1.87 1.91 -52.93 -0.10 1.77 16 10 C 0.09 4.29 4.55 86.31 0.39 4.68 16 11 N -0.52 -22.26 5.29 -886.65 -4.69 -26.95 16 12 C 0.08 3.29 4.29 85.26 0.37 3.65 16 13 C -0.17 -5.65 4.42 -21.23 -0.09 -5.75 16 14 H 0.11 3.37 7.52 -2.38 -0.02 3.35 16 15 C -0.11 -3.02 8.04 20.37 0.16 -2.85 16 16 C -0.08 -1.83 8.00 18.98 0.15 -1.68 16 17 C -0.17 -5.37 4.35 -20.34 -0.09 -5.46 16 18 H 0.07 2.49 7.38 -2.38 -0.02 2.47 16 19 C 0.06 1.94 6.63 85.04 0.56 2.50 16 20 C -0.20 -9.61 9.92 30.60 0.30 -9.30 16 21 C -0.18 -8.21 9.95 30.59 0.30 -7.90 16 22 H 0.26 13.74 8.31 -92.71 -0.77 12.97 16 23 H 0.04 1.61 7.68 -2.39 -0.02 1.59 16 24 H 0.06 3.14 5.25 -2.38 -0.01 3.13 16 25 H 0.04 1.98 5.56 -2.39 -0.01 1.96 16 26 H 0.05 2.37 6.96 -2.38 -0.02 2.35 16 27 H 0.08 2.23 7.51 -2.39 -0.02 2.22 16 28 H 0.08 1.86 8.14 -2.38 -0.02 1.84 16 29 H 0.10 2.09 7.52 -2.39 -0.02 2.07 16 30 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 32 H 0.05 1.62 7.45 -2.39 -0.02 1.61 16 33 H 0.07 3.18 8.14 -2.39 -0.02 3.16 16 34 H 0.07 3.24 8.14 -2.38 -0.02 3.22 16 35 H 0.08 3.44 8.14 -2.38 -0.02 3.42 16 36 H 0.07 3.13 8.14 -2.39 -0.02 3.11 16 Total: -1.00 -57.39 274.39 0.97 -56.42 By element: Atomic # 1 Polarization: 18.27 SS G_CDS: 1.04 Total: 19.31 kcal Atomic # 6 Polarization: -46.74 SS G_CDS: 2.40 Total: -44.34 kcal Atomic # 7 Polarization: -71.58 SS G_CDS: -4.47 Total: -76.06 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.00 Total: 44.66 kcal Total: -57.39 0.97 -56.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688307662.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.362 kcal (2) G-P(sol) polarization free energy of solvation -57.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.424 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds