Wall clock time and date at job start Mon Mar 30 2020 03:11:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86809 * 119.99840 * 2 1 4 4 H 1.48504 * 109.46960 * 269.99787 * 3 2 1 5 5 H 1.48496 * 109.47068 * 30.00083 * 3 2 1 6 6 H 1.48495 * 109.47005 * 150.00213 * 3 2 1 7 7 C 1.37876 * 120.00469 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99613 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00425 * 179.97438 * 7 2 1 10 10 N 1.46893 * 109.47165 * 184.95828 * 9 7 2 11 11 C 1.46898 * 111.00007 * 285.61110 * 10 9 7 12 12 C 1.53006 * 109.47335 * 170.00219 * 11 10 9 13 13 C 1.54632 * 111.03598 * 290.33308 * 12 11 10 14 14 C 1.51170 * 104.69405 * 217.36345 * 13 12 11 15 15 C 1.30523 * 111.12062 * 16.37689 * 14 13 12 16 16 C 1.51098 * 111.10345 * 0.03576 * 15 14 13 17 17 C 1.46907 * 111.00047 * 161.65625 * 10 9 7 18 18 C 1.52991 * 117.49640 * 10.33544 * 17 10 9 19 19 C 1.52995 * 117.49795 * 301.71285 * 17 10 9 20 20 H 0.96997 * 119.99971 * 0.02562 * 1 2 3 21 21 H 1.09002 * 109.46997 * 64.95545 * 9 7 2 22 22 H 1.09003 * 109.46772 * 304.95824 * 9 7 2 23 23 H 1.08993 * 109.47520 * 50.00277 * 11 10 9 24 24 H 1.09000 * 109.46938 * 289.99852 * 11 10 9 25 25 H 1.09000 * 110.91513 * 54.29453 * 12 11 10 26 26 H 1.09010 * 110.38748 * 336.14440 * 13 12 11 27 27 H 1.09005 * 110.39059 * 98.51779 * 13 12 11 28 28 H 1.08003 * 124.42613 * 196.43186 * 14 13 12 29 29 H 1.07997 * 124.44989 * 180.02562 * 15 14 13 30 30 H 1.08992 * 110.38975 * 224.74702 * 16 15 14 31 31 H 1.09002 * 110.48397 * 102.41881 * 16 15 14 32 32 H 1.09005 * 115.54682 * 156.04414 * 17 10 9 33 33 H 1.08996 * 117.50081 * 359.97438 * 18 17 10 34 34 H 1.09005 * 117.50215 * 145.02020 * 18 17 10 35 35 H 1.08996 * 117.49789 * 214.97983 * 19 17 10 36 36 H 1.09003 * 117.49777 * 0.02562 * 19 17 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0000 10 7 4.0012 -2.5738 -0.1190 11 6 3.8292 -3.3041 1.1439 12 6 4.1131 -4.7903 0.9164 13 6 3.0065 -5.4412 0.0545 14 6 2.8278 -6.8235 0.6400 15 6 3.3615 -6.9035 1.8284 16 6 3.9845 -5.5883 2.2347 17 6 5.4039 -2.5989 -0.5550 18 6 6.1633 -1.2709 -0.5684 19 6 5.7421 -1.9247 -1.8860 20 1 -0.4850 0.8400 -0.0004 21 1 3.8753 -0.7583 0.9306 22 1 3.8745 -0.6057 -0.8429 23 1 2.8063 -3.1799 1.4991 24 1 4.5224 -2.9116 1.8879 25 1 5.0952 -4.9344 0.4661 26 1 2.0797 -4.8727 0.1338 27 1 3.3248 -5.5069 -0.9859 28 1 2.3251 -7.6381 0.1398 29 1 3.3581 -7.7929 2.4410 30 1 4.9674 -5.7538 2.6757 31 1 3.3383 -5.0607 2.9363 32 1 5.9628 -3.4962 -0.2888 33 1 5.6221 -0.3785 -0.2542 34 1 7.2223 -1.2940 -0.3110 35 1 6.5239 -2.3779 -2.4954 36 1 4.9240 -1.4620 -2.4380 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000692113018.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:14 Heat of formation + Delta-G solvation = 30.900878 kcal Electronic energy + Delta-G solvation = -15327.784750 eV Core-core repulsion = 13005.323036 eV Total energy + Delta-G solvation = -2322.461714 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 221.148 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.34396 -38.85868 -35.33054 -34.25583 -31.39108 -29.07009 -28.76991 -25.27766 -24.20716 -23.12917 -21.45815 -20.09209 -19.54763 -19.03607 -17.32389 -16.96363 -16.41192 -16.14502 -15.62821 -14.76664 -14.51124 -14.20162 -13.62913 -13.52109 -13.36373 -12.95615 -12.90523 -12.49648 -12.38378 -12.18398 -12.03311 -11.89867 -11.76392 -11.69104 -11.45346 -11.18317 -11.09377 -10.78751 -9.70189 -8.80114 -8.30118 -6.32552 1.30700 1.31531 1.42212 1.45315 2.31075 2.86657 3.02855 3.26459 3.81429 3.86098 3.93824 4.03104 4.18151 4.22464 4.47157 4.48671 4.65400 4.69043 4.79083 4.82391 4.91451 4.93668 4.96916 5.02903 5.08203 5.13597 5.22689 5.23003 5.31231 5.51282 5.56479 5.69013 6.00117 6.11962 6.43045 6.66267 6.74052 7.30531 8.86725 Molecular weight = 221.15amu Principal moments of inertia in cm(-1) A = 0.025463 B = 0.009015 C = 0.007307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.381072 B = 3105.057451 C = 3831.107021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.009 3.991 3 Si 0.942 3.058 4 H -0.265 1.265 5 H -0.280 1.280 6 H -0.253 1.253 7 C -0.513 4.513 8 H 0.036 0.964 9 C 0.176 3.824 10 N -0.510 5.510 11 C 0.079 3.921 12 C -0.079 4.079 13 C -0.087 4.087 14 C -0.176 4.176 15 C -0.166 4.166 16 C -0.097 4.097 17 C 0.013 3.987 18 C -0.224 4.224 19 C -0.171 4.171 20 H 0.266 0.734 21 H -0.016 1.016 22 H 0.030 0.970 23 H 0.049 0.951 24 H 0.031 0.969 25 H 0.089 0.911 26 H 0.045 0.955 27 H 0.063 0.937 28 H 0.135 0.865 29 H 0.146 0.854 30 H 0.088 0.912 31 H 0.067 0.933 32 H 0.137 0.863 33 H 0.074 0.926 34 H 0.116 0.884 35 H 0.123 0.877 36 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.174 -9.347 1.982 16.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.188 4.188 3 Si 0.766 3.234 4 H -0.190 1.190 5 H -0.205 1.205 6 H -0.177 1.177 7 C -0.552 4.552 8 H 0.055 0.945 9 C 0.049 3.951 10 N -0.232 5.232 11 C -0.049 4.049 12 C -0.098 4.098 13 C -0.124 4.124 14 C -0.194 4.194 15 C -0.184 4.184 16 C -0.134 4.134 17 C -0.096 4.096 18 C -0.263 4.263 19 C -0.209 4.209 20 H 0.075 0.925 21 H 0.002 0.998 22 H 0.048 0.952 23 H 0.067 0.933 24 H 0.049 0.951 25 H 0.107 0.893 26 H 0.063 0.937 27 H 0.082 0.918 28 H 0.152 0.848 29 H 0.163 0.837 30 H 0.106 0.894 31 H 0.085 0.915 32 H 0.155 0.845 33 H 0.092 0.908 34 H 0.134 0.866 35 H 0.141 0.859 36 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 12.717 -9.466 1.636 15.937 hybrid contribution -0.125 1.458 0.437 1.527 sum 12.591 -8.008 2.073 15.066 Atomic orbital electron populations 1.70045 1.08024 1.28010 1.52691 1.25807 0.95577 1.02930 0.94530 0.85791 0.79377 0.79020 0.79251 1.19047 1.20522 1.17693 1.21281 0.91197 0.93151 1.49526 0.94545 1.19938 0.93890 0.86898 0.94406 1.61679 1.15852 1.15128 1.30508 1.21947 0.99876 0.93412 0.89620 1.22004 0.99145 0.92380 0.96260 1.21247 0.98084 0.93565 0.99532 1.23498 1.00800 0.97362 0.97730 1.23431 0.99645 0.98405 0.96930 1.21420 1.01456 0.93703 0.96824 1.22905 0.88925 0.96403 1.01391 1.23559 1.01688 0.97943 1.03116 1.23072 1.02949 1.04025 0.90853 0.92458 0.99788 0.95214 0.93262 0.95069 0.89282 0.93659 0.91829 0.84759 0.83674 0.89371 0.91475 0.84545 0.90795 0.86582 0.85897 0.90921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.17 13.96 21.45 0.30 -59.87 16 2 C 0.01 0.52 5.47 84.65 0.46 0.98 16 3 Si 0.94 44.94 27.37 68.60 1.88 46.82 16 4 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 5 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 6 H -0.25 -11.34 6.69 99.48 0.67 -10.67 16 7 C -0.51 -30.35 9.13 25.60 0.23 -30.12 16 8 H 0.04 2.41 7.82 -2.91 -0.02 2.39 16 9 C 0.18 8.57 2.44 85.56 0.21 8.78 16 10 N -0.51 -21.18 4.54 -875.54 -3.97 -25.16 16 11 C 0.08 2.99 4.08 86.31 0.35 3.34 16 12 C -0.08 -2.37 3.08 -9.68 -0.03 -2.40 16 13 C -0.09 -2.83 6.28 30.55 0.19 -2.64 16 14 C -0.18 -4.61 10.78 26.29 0.28 -4.32 16 15 C -0.17 -3.87 10.77 26.26 0.28 -3.59 16 16 C -0.10 -2.42 6.38 30.53 0.19 -2.23 16 17 C 0.01 0.43 5.82 44.91 0.26 0.69 16 18 C -0.22 -6.84 9.56 30.59 0.29 -6.55 16 19 C -0.17 -5.20 9.91 30.59 0.30 -4.89 16 20 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 21 H -0.02 -0.77 7.23 -2.39 -0.02 -0.78 16 22 H 0.03 1.45 4.79 -2.39 -0.01 1.43 16 23 H 0.05 2.21 7.08 -2.39 -0.02 2.20 16 24 H 0.03 1.11 8.12 -2.39 -0.02 1.09 16 25 H 0.09 2.38 6.36 -2.39 -0.02 2.36 16 26 H 0.04 1.81 7.80 -2.38 -0.02 1.79 16 27 H 0.06 2.06 8.14 -2.38 -0.02 2.04 16 28 H 0.13 2.98 8.06 -2.91 -0.02 2.96 16 29 H 0.15 2.57 8.06 -2.91 -0.02 2.54 16 30 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.07 1.82 7.89 -2.39 -0.02 1.80 16 32 H 0.14 3.67 6.33 -2.38 -0.02 3.65 16 33 H 0.07 2.65 6.02 -2.39 -0.01 2.64 16 34 H 0.12 2.79 8.14 -2.38 -0.02 2.77 16 35 H 0.12 2.87 8.14 -2.39 -0.02 2.85 16 36 H 0.07 2.59 7.48 -2.39 -0.02 2.57 16 Total: -1.00 -66.75 284.37 2.24 -64.52 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: 1.00 Total: 16.64 kcal Atomic # 6 Polarization: -45.98 SS G_CDS: 3.04 Total: -42.94 kcal Atomic # 7 Polarization: -81.35 SS G_CDS: -3.68 Total: -85.03 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 1.88 Total: 46.82 kcal Total: -66.75 2.24 -64.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692113018.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.416 kcal (2) G-P(sol) polarization free energy of solvation -66.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.515 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds