Wall clock time and date at job start Mon Mar 30 2020 03:21:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 119.99853 * 2 1 4 4 H 1.48497 * 109.47476 * 239.99921 * 3 2 1 5 5 H 1.48504 * 109.47352 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47369 * 119.99814 * 3 2 1 7 7 C 1.37872 * 120.00116 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00029 * 172.10220 * 7 2 1 9 9 C 1.50702 * 120.00083 * 352.10623 * 7 2 1 10 10 C 1.53007 * 115.55159 * 86.38918 * 9 7 2 11 11 N 1.46896 * 109.47043 * 65.08493 * 10 9 7 12 12 C 1.46897 * 111.00396 * 186.21429 * 11 10 9 13 13 C 1.53001 * 119.30147 * 109.76793 * 12 11 10 14 14 C 1.53005 * 60.34416 * 112.26008 * 13 12 11 15 15 H 1.09002 * 119.29193 * 248.68142 * 14 13 12 16 16 C 1.54243 * 118.21178 * 93.68260 * 14 13 12 17 17 C 1.54896 * 104.15871 * 272.15129 * 16 14 13 18 18 C 1.54274 * 117.40787 * 315.42905 * 12 11 10 19 19 C 1.52991 * 117.50007 * 232.05901 * 9 7 2 20 20 C 1.52995 * 117.50053 * 300.72131 * 9 7 2 21 21 H 0.97006 * 120.00229 * 0.02562 * 1 2 3 22 22 H 1.09005 * 109.46699 * 305.08806 * 10 9 7 23 23 H 1.08996 * 109.47352 * 185.08497 * 10 9 7 24 24 H 1.00905 * 111.00298 * 62.25910 * 11 10 9 25 25 H 1.09000 * 117.45754 * 219.84233 * 13 12 11 26 26 H 1.09001 * 117.45918 * 4.67064 * 13 12 11 27 27 H 1.08995 * 110.50376 * 153.48860 * 16 14 13 28 28 H 1.08991 * 110.61486 * 30.87220 * 16 14 13 29 29 H 1.08998 * 110.75595 * 279.62331 * 17 16 14 30 30 H 1.09004 * 110.91081 * 156.32663 * 17 16 14 31 31 H 1.08995 * 110.48647 * 1.09229 * 18 12 11 32 32 H 1.08997 * 110.48181 * 123.60684 * 18 12 11 33 33 H 1.09006 * 117.50293 * 215.00214 * 19 9 7 34 34 H 1.09002 * 117.49871 * 0.02624 * 19 9 7 35 35 H 1.09011 * 117.49772 * 359.97438 * 20 9 7 36 36 H 1.08994 * 117.50246 * 144.99340 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0768 -1.1985 -0.1280 9 6 1.2618 -2.4929 0.1804 10 6 0.6977 -3.1132 -1.0995 11 7 1.8042 -3.5027 -1.9838 12 6 1.3012 -3.9666 -3.2836 13 6 1.5280 -3.1028 -4.5259 14 6 2.2429 -4.4497 -4.3995 15 1 3.3238 -4.4688 -4.2603 16 6 1.5788 -5.6898 -5.0321 17 6 0.6447 -6.2282 -3.9200 18 6 0.0967 -4.9306 -3.2760 19 6 1.7601 -3.4469 1.2676 20 6 0.4548 -2.6729 1.4676 21 1 -0.4851 0.8401 -0.0004 22 1 0.0653 -2.3853 -1.6079 23 1 0.1073 -3.9939 -0.8469 24 1 2.3845 -4.2045 -1.5492 25 1 0.7120 -3.0325 -5.2450 26 1 2.1296 -2.2015 -4.4084 27 1 2.3309 -6.4346 -5.2923 28 1 1.0011 -5.4086 -5.9125 29 1 1.2075 -6.8129 -3.1923 30 1 -0.1656 -6.8203 -4.3454 31 1 -0.2328 -5.1213 -2.2547 32 1 -0.7214 -4.5234 -3.8701 33 1 1.6861 -4.5166 1.0712 34 1 2.6249 -3.1350 1.8532 35 1 0.4614 -1.8519 2.1848 36 1 -0.4779 -3.2331 1.4028 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693263011.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:18 Heat of formation + Delta-G solvation = 28.967467 kcal Electronic energy + Delta-G solvation = -15348.702999 eV Core-core repulsion = 13026.157446 eV Total energy + Delta-G solvation = -2322.545553 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 221.148 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.63070 -38.48303 -34.41317 -33.82729 -32.25968 -28.60087 -27.61094 -25.99653 -23.35704 -22.88916 -21.37529 -20.64834 -19.88444 -18.03889 -17.17892 -16.58952 -16.12870 -15.87049 -14.96823 -14.84688 -14.33315 -14.08863 -13.79482 -13.66556 -13.31847 -12.89853 -12.82205 -12.45538 -12.38252 -12.03808 -11.94452 -11.85465 -11.67906 -11.42381 -11.05402 -10.73949 -10.43016 -10.30558 -9.89336 -9.02922 -8.04200 -6.10111 1.42279 1.43036 1.50116 2.47012 2.74826 3.17565 3.25492 3.61316 3.65545 3.93478 3.98733 4.31786 4.37379 4.50903 4.53463 4.60206 4.66722 4.67116 4.76502 4.80387 4.90407 4.95979 4.98611 5.02251 5.14597 5.21959 5.23642 5.28700 5.41542 5.50297 5.63378 5.75890 5.87922 6.40064 6.54885 6.76078 6.92824 7.54615 9.04718 Molecular weight = 221.15amu Principal moments of inertia in cm(-1) A = 0.031746 B = 0.008225 C = 0.007202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.786613 B = 3403.232308 C = 3886.836344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.021 3.979 3 Si 0.944 3.056 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.484 4.484 8 H 0.046 0.954 9 C 0.024 3.976 10 C 0.135 3.865 11 N -0.641 5.641 12 C 0.006 3.994 13 C -0.143 4.143 14 C -0.144 4.144 15 H 0.109 0.891 16 C -0.087 4.087 17 C -0.112 4.112 18 C -0.116 4.116 19 C -0.187 4.187 20 C -0.166 4.166 21 H 0.256 0.744 22 H 0.036 0.964 23 H 0.009 0.991 24 H 0.335 0.665 25 H 0.098 0.902 26 H 0.080 0.920 27 H 0.087 0.913 28 H 0.076 0.924 29 H 0.067 0.933 30 H 0.085 0.915 31 H 0.055 0.945 32 H 0.066 0.934 33 H 0.089 0.911 34 H 0.075 0.925 35 H 0.057 0.943 36 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.395 -11.346 -8.082 14.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.178 4.178 3 Si 0.771 3.229 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.522 4.522 8 H 0.064 0.936 9 C 0.023 3.977 10 C 0.006 3.994 11 N -0.270 5.270 12 C -0.086 4.086 13 C -0.181 4.181 14 C -0.163 4.163 15 H 0.127 0.873 16 C -0.124 4.124 17 C -0.150 4.150 18 C -0.156 4.156 19 C -0.225 4.225 20 C -0.204 4.204 21 H 0.065 0.935 22 H 0.054 0.946 23 H 0.027 0.973 24 H 0.153 0.847 25 H 0.116 0.884 26 H 0.099 0.901 27 H 0.105 0.895 28 H 0.095 0.905 29 H 0.086 0.914 30 H 0.104 0.896 31 H 0.074 0.926 32 H 0.085 0.915 33 H 0.107 0.893 34 H 0.094 0.906 35 H 0.076 0.924 36 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.365 -10.574 -8.272 13.495 hybrid contribution -0.130 0.630 0.637 0.906 sum 1.235 -9.944 -7.634 12.598 Atomic orbital electron populations 1.70114 1.06892 1.26669 1.51299 1.25587 0.95506 1.01601 0.95062 0.85841 0.78540 0.80027 0.78531 1.20200 1.21179 1.19870 1.20510 0.92720 0.90257 1.48679 0.93562 1.18954 0.98176 0.94076 0.86468 1.21078 0.90875 0.94739 0.92699 1.59913 1.21023 1.43405 1.02653 1.22578 0.97568 1.01216 0.87205 1.23150 1.02346 0.94365 0.98240 1.23516 0.97884 0.94277 1.00628 0.87322 1.21964 0.98350 0.94608 0.97525 1.22607 0.99083 0.95750 0.97545 1.22382 0.96690 0.95701 1.00808 1.22972 0.97044 0.96456 1.05981 1.22433 0.93529 1.01131 1.03314 0.93515 0.94586 0.97329 0.84666 0.88404 0.90114 0.89464 0.90515 0.91391 0.89626 0.92621 0.91529 0.89311 0.90596 0.92405 0.91057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.61 12.92 21.45 0.28 -53.33 16 2 C 0.02 1.22 5.37 84.65 0.45 1.67 16 3 Si 0.94 45.18 29.54 68.60 2.03 47.20 16 4 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 5 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 6 H -0.27 -12.72 7.11 99.48 0.71 -12.02 16 7 C -0.48 -27.19 8.74 25.60 0.22 -26.97 16 8 H 0.05 2.64 7.83 -2.91 -0.02 2.62 16 9 C 0.02 1.19 1.56 -52.93 -0.08 1.11 16 10 C 0.14 6.19 4.97 86.31 0.43 6.62 16 11 N -0.64 -25.85 6.69 -466.71 -3.12 -28.97 16 12 C 0.01 0.22 2.89 4.23 0.01 0.23 16 13 C -0.14 -4.55 10.05 30.60 0.31 -4.24 16 14 C -0.14 -3.87 6.93 -10.10 -0.07 -3.94 16 15 H 0.11 2.89 8.14 -2.39 -0.02 2.87 16 16 C -0.09 -1.74 6.63 31.66 0.21 -1.53 16 17 C -0.11 -2.37 6.91 31.89 0.22 -2.15 16 18 C -0.12 -3.33 6.08 31.67 0.19 -3.14 16 19 C -0.19 -8.03 9.96 30.61 0.30 -7.72 16 20 C -0.17 -7.94 9.40 30.62 0.29 -7.66 16 21 H 0.26 14.51 8.31 -92.70 -0.77 13.74 16 22 H 0.04 1.92 8.12 -2.38 -0.02 1.90 16 23 H 0.01 0.38 6.44 -2.39 -0.02 0.36 16 24 H 0.33 12.54 8.88 -89.69 -0.80 11.74 16 25 H 0.10 2.76 8.14 -2.39 -0.02 2.74 16 26 H 0.08 2.90 8.14 -2.39 -0.02 2.88 16 27 H 0.09 1.41 8.14 -2.39 -0.02 1.40 16 28 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.09 1.47 8.14 -2.38 -0.02 1.45 16 31 H 0.06 1.73 6.22 -2.39 -0.01 1.72 16 32 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.09 3.28 8.14 -2.38 -0.02 3.26 16 34 H 0.08 3.25 8.14 -2.39 -0.02 3.23 16 35 H 0.06 3.00 8.14 -2.38 -0.02 2.98 16 36 H 0.07 3.19 8.14 -2.39 -0.02 3.17 16 Total: -1.00 -61.17 293.46 1.92 -59.25 By element: Atomic # 1 Polarization: 23.30 SS G_CDS: 0.25 Total: 23.55 kcal Atomic # 6 Polarization: -50.19 SS G_CDS: 2.49 Total: -47.70 kcal Atomic # 7 Polarization: -79.46 SS G_CDS: -2.85 Total: -82.31 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.20 kcal Total: -61.17 1.92 -59.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693263011.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.221 kcal (2) G-P(sol) polarization free energy of solvation -61.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.254 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds