Wall clock time and date at job start Mon Mar 30 2020 03:07:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86796 * 120.00131 * 2 1 4 4 H 1.48499 * 109.47375 * 273.36997 * 3 2 1 5 5 H 1.48500 * 109.47010 * 33.37305 * 3 2 1 6 6 H 1.48503 * 109.47204 * 153.37064 * 3 2 1 7 7 C 1.37879 * 120.00076 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99862 * 352.44744 * 7 2 1 9 9 C 1.50700 * 120.00055 * 172.43733 * 7 2 1 10 10 C 1.53000 * 115.54471 * 92.57612 * 9 7 2 11 11 N 1.46905 * 109.47461 * 32.64688 * 10 9 7 12 12 C 1.47477 * 110.99908 * 259.84633 * 11 10 9 13 13 C 1.53510 * 87.93323 * 221.29575 * 12 11 10 14 14 C 1.52999 * 114.34816 * 139.67871 * 13 12 11 15 15 C 1.53003 * 117.49822 * 154.69431 * 14 13 12 16 16 C 1.52996 * 60.00088 * 252.51410 * 15 14 13 17 17 C 1.47474 * 110.99847 * 163.87431 * 11 10 9 18 18 C 1.52993 * 117.51931 * 238.27458 * 9 7 2 19 19 C 1.52992 * 117.50304 * 306.90627 * 9 7 2 20 20 H 0.96996 * 120.00072 * 359.97438 * 1 2 3 21 21 H 1.09007 * 109.46984 * 152.64525 * 10 9 7 22 22 H 1.09004 * 109.47372 * 272.64363 * 10 9 7 23 23 H 1.09006 * 113.47602 * 336.05723 * 12 11 10 24 24 H 1.08995 * 113.48056 * 106.52680 * 12 11 10 25 25 H 1.08998 * 114.17191 * 272.37794 * 13 12 11 26 26 H 1.09001 * 115.55155 * 300.41575 * 14 13 12 27 27 H 1.08998 * 117.50011 * 0.02562 * 15 14 13 28 28 H 1.09003 * 117.49677 * 145.02438 * 15 14 13 29 29 H 1.09002 * 117.50442 * 252.50649 * 16 15 14 30 30 H 1.09004 * 117.49865 * 107.49170 * 16 15 14 31 31 H 1.09004 * 113.47802 * 253.46503 * 17 11 10 32 32 H 1.08999 * 113.48353 * 23.87415 * 17 11 10 33 33 H 1.09007 * 117.50039 * 214.97561 * 18 9 7 34 34 H 1.09001 * 117.49961 * 359.97438 * 18 9 7 35 35 H 1.09007 * 117.49534 * 359.97438 * 19 9 7 36 36 H 1.08998 * 117.50067 * 144.99264 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4254 2.0876 -1.3976 5 1 1.4841 2.6310 0.7702 6 1 3.5805 1.4206 0.6275 7 6 2.0045 -1.1941 -0.0005 8 1 1.4715 -2.1254 0.1220 9 6 3.5017 -1.1997 -0.1723 10 6 4.3146 -1.1739 1.1236 11 7 3.5858 -1.8984 2.1734 12 6 2.8851 -0.9626 3.0724 13 6 3.3269 -1.8472 4.2467 14 6 3.7694 -1.0716 5.4891 15 6 3.6558 -1.7789 6.8411 16 6 2.6848 -0.6521 6.4834 17 6 4.4753 -2.2292 3.3022 18 6 4.0751 -1.9897 -1.3503 19 6 4.0768 -0.4600 -1.3818 20 1 -0.4850 0.8400 0.0004 21 1 5.2803 -1.6510 0.9563 22 1 4.4689 -0.1408 1.4353 23 1 3.3255 0.0344 3.0902 24 1 1.8054 -0.9446 2.9246 25 1 2.6427 -2.6655 4.4712 26 1 4.6097 -0.3926 5.3449 27 1 3.2663 -2.7969 6.8453 28 1 4.4218 -1.5655 7.5866 29 1 2.8118 0.3028 6.9936 30 1 1.6560 -0.9286 6.2523 31 1 4.7432 -3.2847 3.3492 32 1 5.3406 -1.5710 3.3807 33 1 5.0316 -2.4911 -1.2021 34 1 3.3695 -2.5060 -2.0012 35 1 3.3722 0.0303 -2.0536 36 1 5.0343 0.0450 -1.2543 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701862051.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:05 Heat of formation + Delta-G solvation = 90.371776 kcal Electronic energy + Delta-G solvation = -15443.588505 eV Core-core repulsion = 13123.705643 eV Total energy + Delta-G solvation = -2319.882862 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 221.148 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.77515 -37.00241 -35.94858 -31.95344 -29.50757 -25.83194 -25.10794 -24.29660 -22.21687 -21.54806 -20.79398 -19.32384 -18.72658 -16.26051 -15.48452 -15.25794 -14.69010 -14.42409 -14.11186 -13.64762 -12.94884 -12.60348 -12.50687 -12.17202 -11.69649 -11.46411 -11.10878 -10.99215 -10.85186 -10.74705 -10.38092 -10.21659 -10.03586 -9.82624 -9.52578 -9.40696 -8.87612 -8.51191 -8.37414 -7.88237 -5.98719 -3.94845 3.31719 3.41524 3.44541 3.84430 4.50379 4.58084 4.78615 4.90220 5.00616 5.10365 5.30629 5.39727 5.47131 5.58582 5.68778 5.76216 5.86170 5.94277 5.96944 6.08315 6.11108 6.18577 6.23373 6.27800 6.39687 6.48528 6.55803 6.60379 6.76018 6.83837 6.99336 7.18570 7.35307 7.85614 7.94278 8.69548 9.10873 9.66357 11.14026 Molecular weight = 221.15amu Principal moments of inertia in cm(-1) A = 0.029162 B = 0.009428 C = 0.008114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.918767 B = 2969.302920 C = 3450.088890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.075 3.925 3 Si 0.870 3.130 4 H -0.282 1.282 5 H -0.296 1.296 6 H -0.263 1.263 7 C -0.454 4.454 8 H 0.080 0.920 9 C 0.014 3.986 10 C 0.055 3.945 11 N -0.433 5.433 12 C 0.026 3.974 13 C -0.091 4.091 14 C -0.139 4.139 15 C -0.181 4.181 16 C -0.179 4.179 17 C -0.005 4.005 18 C -0.179 4.179 19 C -0.209 4.209 20 H 0.261 0.739 21 H 0.047 0.953 22 H 0.037 0.963 23 H 0.056 0.944 24 H 0.092 0.908 25 H 0.098 0.902 26 H 0.099 0.901 27 H 0.093 0.907 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.096 0.904 31 H 0.075 0.925 32 H 0.056 0.944 33 H 0.068 0.932 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.708 -1.070 9.588 12.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.126 4.126 3 Si 0.699 3.301 4 H -0.208 1.208 5 H -0.223 1.223 6 H -0.187 1.187 7 C -0.492 4.492 8 H 0.098 0.902 9 C 0.013 3.987 10 C -0.074 4.074 11 N -0.154 5.154 12 C -0.103 4.103 13 C -0.110 4.110 14 C -0.157 4.157 15 C -0.218 4.218 16 C -0.216 4.216 17 C -0.134 4.134 18 C -0.217 4.217 19 C -0.247 4.247 20 H 0.071 0.929 21 H 0.066 0.934 22 H 0.056 0.944 23 H 0.074 0.926 24 H 0.110 0.890 25 H 0.116 0.884 26 H 0.117 0.883 27 H 0.112 0.888 28 H 0.107 0.893 29 H 0.108 0.892 30 H 0.115 0.885 31 H 0.094 0.906 32 H 0.074 0.926 33 H 0.087 0.913 34 H 0.103 0.897 35 H 0.104 0.896 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 8.189 -1.471 9.180 12.389 hybrid contribution 1.014 1.815 0.205 2.089 sum 9.203 0.344 9.385 13.149 Atomic orbital electron populations 1.69906 1.06150 1.26552 1.51521 1.24902 0.94419 0.98389 0.94883 0.87029 0.80601 0.84343 0.78101 1.20835 1.22342 1.18738 1.20141 0.86706 0.94449 1.47931 0.90222 1.19340 0.95866 0.98515 0.85021 1.22432 0.94862 0.95540 0.94520 1.68875 1.14753 1.28922 1.02885 1.23697 1.02527 0.94178 0.89926 1.22374 0.98371 0.98722 0.91557 1.22259 1.00767 1.02374 0.90325 1.22929 1.02763 0.97601 0.98542 1.22901 0.96295 0.98901 1.03472 1.23873 0.95395 1.01243 0.92888 1.22848 1.00661 0.92670 1.05473 1.22968 1.01048 0.94853 1.05829 0.92922 0.93418 0.94441 0.92626 0.88974 0.88393 0.88266 0.88838 0.89317 0.89174 0.88539 0.90609 0.92609 0.91326 0.89680 0.89560 0.91388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.43 13.96 55.43 0.77 -26.65 16 2 C 0.07 2.12 5.46 -17.82 -0.10 2.03 16 3 Si 0.87 21.88 25.06 -169.99 -4.26 17.62 16 4 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 5 H -0.30 -7.50 7.11 56.52 0.40 -7.10 16 6 H -0.26 -6.27 5.45 56.52 0.31 -5.96 16 7 C -0.45 -12.64 8.10 -34.44 -0.28 -12.92 16 8 H 0.08 2.48 8.06 -52.49 -0.42 2.06 16 9 C 0.01 0.33 1.29 -155.67 -0.20 0.13 16 10 C 0.06 1.16 4.93 -3.82 -0.02 1.15 16 11 N -0.43 -8.84 5.65 -244.64 -1.38 -10.22 16 12 C 0.03 0.50 6.71 -7.55 -0.05 0.45 16 13 C -0.09 -1.41 4.13 -90.09 -0.37 -1.79 16 14 C -0.14 -1.81 5.49 -90.62 -0.50 -2.31 16 15 C -0.18 -2.00 10.25 -26.73 -0.27 -2.28 16 16 C -0.18 -2.14 10.25 -26.73 -0.27 -2.42 16 17 C 0.00 -0.07 7.21 -7.55 -0.05 -0.13 16 18 C -0.18 -3.82 9.88 -26.74 -0.26 -4.09 16 19 C -0.21 -4.62 7.60 -26.74 -0.20 -4.83 16 20 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 21 H 0.05 0.91 7.74 -51.93 -0.40 0.51 16 22 H 0.04 0.81 5.64 -51.93 -0.29 0.52 16 23 H 0.06 1.08 7.34 -51.93 -0.38 0.70 16 24 H 0.09 2.05 8.14 -51.93 -0.42 1.63 16 25 H 0.10 1.52 8.14 -51.93 -0.42 1.10 16 26 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 27 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 29 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.10 1.20 8.14 -51.93 -0.42 0.77 16 31 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.06 0.84 7.87 -51.93 -0.41 0.43 16 33 H 0.07 1.29 8.04 -51.92 -0.42 0.88 16 34 H 0.08 1.85 8.14 -51.93 -0.42 1.43 16 35 H 0.09 2.02 7.06 -51.93 -0.37 1.65 16 36 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 LS Contribution 287.11 15.07 4.33 4.33 Total: -1.00 -29.47 287.11 -9.27 -38.74 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: -6.15 Total: 3.18 kcal Atomic # 6 Polarization: -24.41 SS G_CDS: -2.59 Total: -27.00 kcal Atomic # 7 Polarization: -36.26 SS G_CDS: -0.61 Total: -36.87 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.26 Total: 17.62 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -29.47 -9.27 -38.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701862051.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.117 kcal (2) G-P(sol) polarization free energy of solvation -29.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.745 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds