Wall clock time and date at job start Mon Mar 30 2020 03:07:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86796 * 120.00131 * 2 1 4 4 H 1.48499 * 109.47375 * 273.36997 * 3 2 1 5 5 H 1.48500 * 109.47010 * 33.37305 * 3 2 1 6 6 H 1.48503 * 109.47204 * 153.37064 * 3 2 1 7 7 C 1.37879 * 120.00076 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99862 * 352.44744 * 7 2 1 9 9 C 1.50700 * 120.00055 * 172.43733 * 7 2 1 10 10 C 1.53000 * 115.54471 * 92.57612 * 9 7 2 11 11 N 1.46905 * 109.47461 * 32.64688 * 10 9 7 12 12 C 1.47477 * 110.99908 * 259.84633 * 11 10 9 13 13 C 1.53510 * 87.93323 * 221.29575 * 12 11 10 14 14 C 1.52999 * 114.34816 * 139.67871 * 13 12 11 15 15 C 1.53003 * 117.49822 * 154.69431 * 14 13 12 16 16 C 1.52996 * 60.00088 * 252.51410 * 15 14 13 17 17 C 1.47474 * 110.99847 * 163.87431 * 11 10 9 18 18 C 1.52993 * 117.51931 * 238.27458 * 9 7 2 19 19 C 1.52992 * 117.50304 * 306.90627 * 9 7 2 20 20 H 0.96996 * 120.00072 * 359.97438 * 1 2 3 21 21 H 1.09007 * 109.46984 * 152.64525 * 10 9 7 22 22 H 1.09004 * 109.47372 * 272.64363 * 10 9 7 23 23 H 1.09006 * 113.47602 * 336.05723 * 12 11 10 24 24 H 1.08995 * 113.48056 * 106.52680 * 12 11 10 25 25 H 1.08998 * 114.17191 * 272.37794 * 13 12 11 26 26 H 1.09001 * 115.55155 * 300.41575 * 14 13 12 27 27 H 1.08998 * 117.50011 * 0.02562 * 15 14 13 28 28 H 1.09003 * 117.49677 * 145.02438 * 15 14 13 29 29 H 1.09002 * 117.50442 * 252.50649 * 16 15 14 30 30 H 1.09004 * 117.49865 * 107.49170 * 16 15 14 31 31 H 1.09004 * 113.47802 * 253.46503 * 17 11 10 32 32 H 1.08999 * 113.48353 * 23.87415 * 17 11 10 33 33 H 1.09007 * 117.50039 * 214.97561 * 18 9 7 34 34 H 1.09001 * 117.49961 * 359.97438 * 18 9 7 35 35 H 1.09007 * 117.49534 * 359.97438 * 19 9 7 36 36 H 1.08998 * 117.50067 * 144.99264 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4254 2.0876 -1.3976 5 1 1.4841 2.6310 0.7702 6 1 3.5805 1.4206 0.6275 7 6 2.0045 -1.1941 -0.0005 8 1 1.4715 -2.1254 0.1220 9 6 3.5017 -1.1997 -0.1723 10 6 4.3146 -1.1739 1.1236 11 7 3.5858 -1.8984 2.1734 12 6 2.8851 -0.9626 3.0724 13 6 3.3269 -1.8472 4.2467 14 6 3.7694 -1.0716 5.4891 15 6 3.6558 -1.7789 6.8411 16 6 2.6848 -0.6521 6.4834 17 6 4.4753 -2.2292 3.3022 18 6 4.0751 -1.9897 -1.3503 19 6 4.0768 -0.4600 -1.3818 20 1 -0.4850 0.8400 0.0004 21 1 5.2803 -1.6510 0.9563 22 1 4.4689 -0.1408 1.4353 23 1 3.3255 0.0344 3.0902 24 1 1.8054 -0.9446 2.9246 25 1 2.6427 -2.6655 4.4712 26 1 4.6097 -0.3926 5.3449 27 1 3.2663 -2.7969 6.8453 28 1 4.4218 -1.5655 7.5866 29 1 2.8118 0.3028 6.9936 30 1 1.6560 -0.9286 6.2523 31 1 4.7432 -3.2847 3.3492 32 1 5.3406 -1.5710 3.3807 33 1 5.0316 -2.4911 -1.2021 34 1 3.3695 -2.5060 -2.0012 35 1 3.3722 0.0303 -2.0536 36 1 5.0343 0.0450 -1.2543 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701862051.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:04 Heat of formation + Delta-G solvation = 71.529519 kcal Electronic energy + Delta-G solvation = -15444.405567 eV Core-core repulsion = 13123.705643 eV Total energy + Delta-G solvation = -2320.699924 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 221.148 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.17639 -38.55218 -37.20960 -34.14590 -30.97804 -27.80715 -26.61189 -25.81243 -23.28504 -23.10776 -22.04823 -20.86877 -20.37606 -18.18397 -17.00018 -16.71486 -16.33275 -15.69017 -15.64627 -15.33127 -14.72291 -14.21843 -14.15650 -13.70054 -13.16753 -13.04316 -12.63133 -12.37415 -12.22156 -12.10468 -11.98376 -11.83131 -11.71649 -11.45119 -11.07981 -10.75191 -10.63675 -10.53758 -10.17595 -9.44724 -8.21271 -6.20395 1.31049 1.33834 1.44704 2.38993 2.84659 3.08783 3.13398 3.42589 3.64959 3.77768 4.07095 4.13904 4.24655 4.34264 4.36850 4.42024 4.47309 4.51363 4.64109 4.72356 4.80049 4.83574 4.85551 4.91487 5.00106 5.07731 5.09645 5.23771 5.31732 5.32271 5.46235 5.48296 5.75689 5.81283 6.35106 6.51911 6.85174 7.43734 8.95830 Molecular weight = 221.15amu Principal moments of inertia in cm(-1) A = 0.029162 B = 0.009428 C = 0.008114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.918767 B = 2969.302920 C = 3450.088890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.022 3.978 3 Si 0.927 3.073 4 H -0.276 1.276 5 H -0.301 1.301 6 H -0.236 1.236 7 C -0.444 4.444 8 H 0.026 0.974 9 C -0.018 4.018 10 C 0.063 3.937 11 N -0.469 5.469 12 C 0.021 3.979 13 C -0.073 4.073 14 C -0.152 4.152 15 C -0.160 4.160 16 C -0.187 4.187 17 C 0.006 3.994 18 C -0.165 4.165 19 C -0.202 4.202 20 H 0.260 0.740 21 H 0.075 0.925 22 H 0.034 0.966 23 H 0.056 0.944 24 H 0.046 0.954 25 H 0.092 0.908 26 H 0.109 0.891 27 H 0.096 0.904 28 H 0.110 0.890 29 H 0.103 0.897 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.076 0.924 33 H 0.104 0.896 34 H 0.070 0.930 35 H 0.067 0.933 36 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.042 -0.700 10.738 16.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.174 4.174 3 Si 0.754 3.246 4 H -0.202 1.202 5 H -0.229 1.229 6 H -0.160 1.160 7 C -0.482 4.482 8 H 0.044 0.956 9 C -0.019 4.019 10 C -0.065 4.065 11 N -0.190 5.190 12 C -0.108 4.108 13 C -0.092 4.092 14 C -0.170 4.170 15 C -0.197 4.197 16 C -0.224 4.224 17 C -0.123 4.123 18 C -0.202 4.202 19 C -0.239 4.239 20 H 0.069 0.931 21 H 0.093 0.907 22 H 0.052 0.948 23 H 0.074 0.926 24 H 0.064 0.936 25 H 0.110 0.890 26 H 0.127 0.873 27 H 0.115 0.885 28 H 0.129 0.871 29 H 0.122 0.878 30 H 0.102 0.898 31 H 0.108 0.892 32 H 0.094 0.906 33 H 0.122 0.878 34 H 0.089 0.911 35 H 0.086 0.914 36 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 11.551 -1.120 10.332 15.538 hybrid contribution -0.105 1.570 -0.172 1.583 sum 11.445 0.450 10.159 15.311 Atomic orbital electron populations 1.70059 1.08136 1.27336 1.54042 1.25622 0.94953 1.01954 0.94861 0.86094 0.80389 0.79780 0.78367 1.20219 1.22874 1.15967 1.20155 0.89359 0.92217 1.46466 0.95565 1.19378 0.93630 1.01531 0.87359 1.22309 0.95366 0.95822 0.93050 1.68793 1.16658 1.29181 1.04386 1.23609 0.99738 0.94986 0.92465 1.22198 0.97725 0.97530 0.91714 1.22186 1.01564 1.03299 0.89959 1.23014 1.02261 0.97325 0.97105 1.22973 0.95715 1.00266 1.03423 1.23893 0.95386 1.02470 0.90529 1.22885 1.01589 0.92601 1.03162 1.22987 1.01775 0.95429 1.03746 0.93086 0.90672 0.94791 0.92603 0.93562 0.89020 0.87339 0.88531 0.87128 0.87841 0.89758 0.89216 0.90631 0.87792 0.91100 0.91427 0.88119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.81 13.96 21.45 0.30 -60.52 16 2 C 0.02 1.28 5.46 84.66 0.46 1.74 16 3 Si 0.93 45.35 25.06 68.60 1.72 47.07 16 4 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 5 H -0.30 -14.87 7.11 99.48 0.71 -14.16 16 6 H -0.24 -10.47 5.45 99.48 0.54 -9.93 16 7 C -0.44 -25.52 8.10 25.60 0.21 -25.32 16 8 H 0.03 1.74 8.06 -2.91 -0.02 1.72 16 9 C -0.02 -0.82 1.29 -52.93 -0.07 -0.89 16 10 C 0.06 2.51 4.93 86.30 0.43 2.94 16 11 N -0.47 -18.71 5.65 -927.90 -5.24 -23.95 16 12 C 0.02 0.84 6.71 83.57 0.56 1.40 16 13 C -0.07 -2.17 4.13 -10.45 -0.04 -2.21 16 14 C -0.15 -3.59 5.49 -10.79 -0.06 -3.65 16 15 C -0.16 -3.04 10.25 30.59 0.31 -2.73 16 16 C -0.19 -4.15 10.25 30.59 0.31 -3.83 16 17 C 0.01 0.17 7.21 83.57 0.60 0.77 16 18 C -0.17 -6.68 9.88 30.59 0.30 -6.37 16 19 C -0.20 -8.37 7.60 30.59 0.23 -8.14 16 20 H 0.26 15.70 8.31 -92.71 -0.77 14.93 16 21 H 0.07 2.55 7.74 -2.38 -0.02 2.53 16 22 H 0.03 1.36 5.64 -2.39 -0.01 1.35 16 23 H 0.06 2.15 7.34 -2.38 -0.02 2.13 16 24 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 25 H 0.09 2.81 8.14 -2.39 -0.02 2.79 16 26 H 0.11 2.40 8.14 -2.39 -0.02 2.38 16 27 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 28 H 0.11 1.66 8.14 -2.39 -0.02 1.65 16 29 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.08 2.06 8.14 -2.38 -0.02 2.04 16 31 H 0.09 2.40 8.14 -2.38 -0.02 2.38 16 32 H 0.08 1.96 7.87 -2.39 -0.02 1.94 16 33 H 0.10 3.48 8.04 -2.38 -0.02 3.46 16 34 H 0.07 3.03 8.14 -2.39 -0.02 3.01 16 35 H 0.07 3.05 7.06 -2.38 -0.02 3.04 16 36 H 0.10 3.54 8.14 -2.39 -0.02 3.52 16 Total: -1.00 -66.35 287.11 0.89 -65.45 By element: Atomic # 1 Polarization: 17.36 SS G_CDS: 0.86 Total: 18.23 kcal Atomic # 6 Polarization: -49.54 SS G_CDS: 3.25 Total: -46.29 kcal Atomic # 7 Polarization: -79.53 SS G_CDS: -4.94 Total: -84.47 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 1.72 Total: 47.07 kcal Total: -66.35 0.89 -65.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701862051.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.981 kcal (2) G-P(sol) polarization free energy of solvation -66.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.452 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds