Wall clock time and date at job start Mon Mar 30 2020 03:22:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 120.00217 * 2 1 4 4 H 1.48502 * 109.47121 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46925 * 300.00021 * 3 2 1 6 6 H 1.48496 * 109.46990 * 59.99805 * 3 2 1 7 7 C 1.37878 * 119.99753 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00324 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00196 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.13651 * 59.26279 * 9 7 2 11 11 C 1.52762 * 109.17979 * 299.99944 * 9 7 2 12 12 C 1.53778 * 110.91678 * 186.84948 * 11 9 7 13 13 N 1.44949 * 107.57560 * 56.57622 * 12 11 9 14 14 C 1.47363 * 118.40996 * 171.89083 * 13 12 11 15 15 C 1.51330 * 104.90257 * 125.59048 * 14 13 12 16 16 H 1.09002 * 112.28068 * 272.78588 * 15 14 13 17 17 C 1.49441 * 130.64760 * 116.60035 * 15 14 13 18 18 C 1.56699 * 80.51988 * 222.95457 * 17 15 14 19 19 C 1.49434 * 81.47351 * 46.19855 * 18 17 15 20 20 H 1.08994 * 113.03775 * 70.33096 * 19 18 17 21 21 C 1.49853 * 132.44245 * 229.76108 * 19 18 17 22 22 H 1.09001 * 110.47147 * 17.69248 * 21 19 18 23 23 C 1.51966 * 109.37136 * 178.19344 * 9 7 2 24 24 H 0.97005 * 119.99369 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.18238 * 66.49394 * 11 9 7 26 26 H 1.08997 * 109.18042 * 307.20477 * 11 9 7 27 27 H 1.08998 * 109.83670 * 176.09695 * 12 11 9 28 28 H 1.09000 * 109.83965 * 296.99703 * 12 11 9 29 29 H 1.08996 * 110.35715 * 244.44783 * 14 13 12 30 30 H 1.09000 * 110.35029 * 6.73576 * 14 13 12 31 31 H 1.09000 * 114.67891 * 335.85559 * 17 15 14 32 32 H 1.09000 * 114.68337 * 110.04942 * 17 15 14 33 33 H 1.09005 * 114.53165 * 293.04663 * 18 17 15 34 34 H 1.09004 * 114.53291 * 159.34634 * 18 17 15 35 35 H 1.09004 * 108.88809 * 57.00165 * 23 9 7 36 36 H 1.08997 * 110.07421 * 296.50729 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2510 -2.4992 0.0005 10 1 0.6169 -2.5456 -0.8848 11 6 0.3748 -2.5728 1.2497 12 6 -0.2821 -3.9572 1.3787 13 7 0.7780 -4.9458 1.3856 14 6 0.4286 -6.3464 1.6821 15 6 0.9738 -7.1391 0.5139 16 1 0.2647 -7.1989 -0.3117 17 6 2.0315 -8.1935 0.4620 18 6 2.4292 -7.3661 -0.8080 19 6 2.2339 -6.2309 0.1439 20 1 3.0073 -6.1787 0.9101 21 6 1.4584 -4.9522 0.0473 22 1 0.7239 -5.0116 -0.7559 23 6 2.2399 -3.6522 -0.0440 24 1 -0.4849 0.8401 -0.0004 25 1 -0.4030 -1.8118 1.1870 26 1 0.9896 -2.3847 2.1299 27 1 -0.8465 -4.0135 2.3095 28 1 -0.9464 -4.1318 0.5324 29 1 0.9009 -6.6665 2.6108 30 1 -0.6533 -6.4617 1.7465 31 1 2.7548 -8.1531 1.2764 32 1 1.6630 -9.1980 0.2538 33 1 1.7031 -7.4062 -1.6200 34 1 3.4586 -7.5089 -1.1370 35 1 2.9191 -3.5675 0.8044 36 1 2.8054 -3.6242 -0.9754 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709933312.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:13 Heat of formation + Delta-G solvation = 78.759583 kcal Electronic energy + Delta-G solvation = -15764.971457 eV Core-core repulsion = 13444.585052 eV Total energy + Delta-G solvation = -2320.386405 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 221.148 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.25711 -36.99245 -33.69018 -31.42718 -30.17315 -27.88110 -24.83221 -24.60124 -22.91473 -21.48830 -20.57278 -19.62539 -18.28120 -16.30742 -15.39289 -14.77858 -14.49008 -14.22744 -14.03133 -13.28846 -12.94226 -12.48479 -12.31572 -11.77366 -11.72394 -11.40648 -11.18007 -10.94187 -10.88886 -10.85994 -10.44610 -10.35519 -10.02835 -9.88874 -9.34149 -9.25607 -8.69160 -8.50216 -8.24097 -7.58855 -5.93128 -3.97901 3.33171 3.41071 3.45530 3.89384 4.38923 4.49492 4.53155 4.88207 5.06321 5.36935 5.43478 5.57587 5.64235 5.80856 5.86281 5.93344 5.94471 6.02733 6.10414 6.19704 6.27845 6.34252 6.54440 6.57130 6.60486 6.71890 6.98449 7.13089 7.27922 7.51182 7.66128 7.78078 8.00192 8.12513 8.22692 8.53757 9.06586 9.66297 11.13290 Molecular weight = 221.15amu Principal moments of inertia in cm(-1) A = 0.054133 B = 0.007343 C = 0.006752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 517.121506 B = 3812.115867 C = 4146.040639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.889 3.111 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.507 4.507 8 H 0.055 0.945 9 C 0.047 3.953 10 H 0.017 0.983 11 C -0.099 4.099 12 C 0.063 3.937 13 N -0.543 5.543 14 C 0.072 3.928 15 C -0.178 4.178 16 H 0.088 0.912 17 C -0.106 4.106 18 C -0.110 4.110 19 C -0.136 4.136 20 H 0.102 0.898 21 C 0.096 3.904 22 H 0.041 0.959 23 C -0.090 4.090 24 H 0.258 0.742 25 H 0.090 0.910 26 H 0.043 0.957 27 H 0.054 0.946 28 H 0.018 0.982 29 H 0.068 0.932 30 H 0.041 0.959 31 H 0.090 0.910 32 H 0.061 0.939 33 H 0.085 0.915 34 H 0.065 0.935 35 H 0.057 0.943 36 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.595 -13.238 0.786 13.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.141 4.141 3 Si 0.718 3.282 4 H -0.198 1.198 5 H -0.212 1.212 6 H -0.211 1.211 7 C -0.546 4.546 8 H 0.073 0.927 9 C 0.029 3.971 10 H 0.035 0.965 11 C -0.137 4.137 12 C -0.065 4.065 13 N -0.269 5.269 14 C -0.055 4.055 15 C -0.198 4.198 16 H 0.106 0.894 17 C -0.144 4.144 18 C -0.148 4.148 19 C -0.155 4.155 20 H 0.120 0.880 21 C -0.011 4.011 22 H 0.059 0.941 23 C -0.128 4.128 24 H 0.068 0.932 25 H 0.108 0.892 26 H 0.062 0.938 27 H 0.072 0.928 28 H 0.036 0.964 29 H 0.087 0.913 30 H 0.059 0.941 31 H 0.108 0.892 32 H 0.080 0.920 33 H 0.104 0.896 34 H 0.084 0.916 35 H 0.076 0.924 36 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 1.686 -12.900 1.212 13.066 hybrid contribution -0.382 0.759 -0.503 0.988 sum 1.305 -12.141 0.709 12.231 Atomic orbital electron populations 1.69899 1.05880 1.26109 1.51401 1.24978 0.94837 0.99023 0.95288 0.86578 0.80204 0.84006 0.77460 1.19820 1.21172 1.21107 1.21273 0.92923 0.90638 1.49744 0.92676 1.18381 0.92834 0.91976 0.93947 0.96509 1.21694 1.00530 0.92082 0.99397 1.22105 0.91865 0.94169 0.98323 1.63064 1.29969 1.04421 1.29401 1.21612 0.98044 0.88606 0.97250 1.23817 0.96137 0.99840 0.99969 0.89367 1.22667 0.97386 0.96130 0.98190 1.22701 1.01352 0.95106 0.95639 1.23035 0.97715 0.93522 1.01227 0.88009 1.21616 0.95485 0.94393 0.89610 0.94121 1.21167 0.98650 0.92841 1.00094 0.93218 0.89224 0.93821 0.92771 0.96367 0.91346 0.94095 0.89155 0.92030 0.89644 0.91607 0.92422 0.93321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.88 11.36 55.43 0.63 -25.25 16 2 C 0.06 1.66 5.30 -17.82 -0.09 1.57 16 3 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 4 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.51 -14.21 8.53 -34.44 -0.29 -14.50 16 8 H 0.05 1.53 7.74 -52.49 -0.41 1.13 16 9 C 0.05 1.20 2.09 -92.42 -0.19 1.01 16 10 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 11 C -0.10 -2.41 5.02 -26.45 -0.13 -2.54 16 12 C 0.06 1.30 5.86 -4.47 -0.03 1.27 16 13 N -0.54 -10.27 4.57 -228.21 -1.04 -11.31 16 14 C 0.07 1.12 6.97 -4.41 -0.03 1.09 16 15 C -0.18 -2.44 4.15 -105.64 -0.44 -2.88 16 16 H 0.09 1.23 7.32 -51.93 -0.38 0.85 16 17 C -0.11 -1.18 8.12 -39.02 -0.32 -1.49 16 18 C -0.11 -1.32 8.03 -42.66 -0.34 -1.67 16 19 C -0.14 -2.05 4.19 -102.72 -0.43 -2.48 16 20 H 0.10 1.58 7.61 -51.93 -0.40 1.18 16 21 C 0.10 1.79 2.31 -67.98 -0.16 1.63 16 22 H 0.04 0.80 7.78 -51.93 -0.40 0.40 16 23 C -0.09 -1.95 4.97 -27.78 -0.14 -2.09 16 24 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 25 H 0.09 2.41 6.22 -51.93 -0.32 2.09 16 26 H 0.04 1.10 8.12 -51.93 -0.42 0.68 16 27 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.02 0.38 7.97 -51.93 -0.41 -0.03 16 29 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 30 H 0.04 0.61 7.92 -51.93 -0.41 0.20 16 31 H 0.09 0.96 7.62 -51.93 -0.40 0.57 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.09 1.00 7.50 -51.93 -0.39 0.61 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 36 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 273.41 15.07 4.12 4.12 Total: -1.00 -28.49 273.41 -9.94 -38.43 By element: Atomic # 1 Polarization: 4.54 SS G_CDS: -6.03 Total: -1.50 kcal Atomic # 6 Polarization: -18.48 SS G_CDS: -2.59 Total: -21.08 kcal Atomic # 7 Polarization: -36.15 SS G_CDS: -0.41 Total: -36.56 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -28.49 -9.94 -38.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709933312.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.191 kcal (2) G-P(sol) polarization free energy of solvation -28.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.432 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds