Wall clock time and date at job start Mon Mar 30 2020 03:22:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 120.00401 * 2 1 4 4 H 1.48499 * 109.46864 * 270.00512 * 3 2 1 5 5 H 1.48504 * 109.46773 * 30.00039 * 3 2 1 6 6 H 1.48492 * 109.47333 * 150.00440 * 3 2 1 7 7 C 1.37882 * 119.99628 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99927 * 179.97438 * 7 2 1 9 9 C 1.50692 * 120.00155 * 359.97438 * 7 2 1 10 10 H 1.08999 * 109.25419 * 60.53251 * 9 7 2 11 11 C 1.52828 * 109.25205 * 301.09864 * 9 7 2 12 12 C 1.53632 * 110.62584 * 293.64727 * 11 9 7 13 13 N 1.45558 * 107.88132 * 302.81000 * 12 11 9 14 14 C 1.46338 * 117.13137 * 185.45684 * 13 12 11 15 15 C 1.54851 * 106.02670 * 208.14785 * 14 13 12 16 16 H 1.09002 * 115.65501 * 233.32053 * 15 14 13 17 17 C 1.53802 * 112.40223 * 96.40489 * 15 14 13 18 18 C 1.53587 * 87.83134 * 231.36824 * 17 15 14 19 19 C 1.53431 * 87.79586 * 24.23238 * 18 17 15 20 20 H 1.09004 * 116.37300 * 216.97137 * 19 18 17 21 21 C 1.48647 * 109.71834 * 65.27854 * 13 12 11 22 22 H 1.09005 * 111.04104 * 52.53258 * 21 13 12 23 23 C 1.52366 * 107.39121 * 290.57198 * 21 13 12 24 24 H 0.96994 * 119.99548 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.24766 * 53.94312 * 11 9 7 26 26 H 1.09008 * 109.24869 * 173.38507 * 11 9 7 27 27 H 1.09000 * 109.77406 * 183.21927 * 12 11 9 28 28 H 1.08995 * 109.77869 * 62.40789 * 12 11 9 29 29 H 1.08996 * 110.13957 * 89.00582 * 14 13 12 30 30 H 1.08999 * 110.13945 * 327.28847 * 14 13 12 31 31 H 1.08997 * 113.48761 * 116.63100 * 17 15 14 32 32 H 1.08996 * 113.49118 * 346.10716 * 17 15 14 33 33 H 1.08996 * 113.49311 * 138.96287 * 18 17 15 34 34 H 1.08998 * 113.50005 * 269.49785 * 18 17 15 35 35 H 1.09006 * 109.82345 * 182.30474 * 23 21 13 36 36 H 1.08996 * 109.82707 * 303.17463 * 23 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.6325 -2.5571 -0.8962 11 6 0.3541 -2.5632 1.2353 12 6 1.2008 -2.6293 2.5155 13 7 2.0735 -3.7899 2.4147 14 6 2.8867 -4.1171 3.5865 15 6 4.1506 -4.8289 3.0445 16 1 4.3716 -5.8002 3.4871 17 6 5.3398 -3.8674 2.8803 18 6 5.4880 -4.3891 1.4434 19 6 4.0043 -4.7767 1.4942 20 1 3.7279 -5.7017 0.9881 21 6 3.0399 -3.5955 1.3022 22 1 3.5641 -2.6448 1.4007 23 6 2.2536 -3.6631 -0.0011 24 1 -0.4849 0.8400 0.0004 25 1 -0.2771 -1.6752 1.2675 26 1 -0.2766 -3.4502 1.1759 27 1 0.5494 -2.7320 3.3835 28 1 1.8003 -1.7239 2.6084 29 1 2.3365 -4.7834 4.2509 30 1 3.1667 -3.2061 4.1154 31 1 6.1873 -4.1114 3.5207 32 1 5.0587 -2.8157 2.9339 33 1 5.7081 -3.6064 0.7175 34 1 6.1580 -5.2446 1.3586 35 1 2.9328 -3.5656 -0.8481 36 1 1.7204 -4.6117 -0.0624 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709933319.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:15 Heat of formation + Delta-G solvation = 5.055324 kcal Electronic energy + Delta-G solvation = -16150.838675 eV Core-core repulsion = 13827.256213 eV Total energy + Delta-G solvation = -2323.582461 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 221.148 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.82433 -38.10583 -35.13329 -33.27580 -31.35748 -29.29444 -26.91133 -26.12329 -24.32539 -23.37955 -22.12067 -20.59134 -19.43646 -17.87792 -16.83296 -16.63657 -16.05197 -15.65374 -15.38798 -14.78116 -14.60725 -14.30400 -14.06649 -13.26206 -13.10611 -12.82522 -12.71061 -12.70011 -12.48181 -12.35675 -12.08416 -11.77105 -11.49132 -11.18354 -10.99278 -10.93689 -10.78349 -10.60844 -10.30092 -9.06436 -8.06762 -6.19002 1.36607 1.38020 1.46683 2.41299 3.16472 3.19403 3.48047 3.72889 3.87430 4.01872 4.31810 4.40128 4.44598 4.48179 4.55670 4.69733 4.74131 4.79201 4.88134 4.92366 4.99066 5.05598 5.06981 5.14625 5.23737 5.35286 5.38565 5.45325 5.59805 5.62657 5.71278 5.82641 6.06375 6.32806 6.42000 6.54838 6.90911 7.47133 8.97003 Molecular weight = 221.15amu Principal moments of inertia in cm(-1) A = 0.032809 B = 0.010224 C = 0.009278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.210394 B = 2738.080567 C = 3017.243352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.013 3.987 3 Si 0.944 3.056 4 H -0.276 1.276 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.512 4.512 8 H 0.047 0.953 9 C 0.038 3.962 10 H -0.011 1.011 11 C -0.098 4.098 12 C 0.087 3.913 13 N -0.541 5.541 14 C 0.051 3.949 15 C -0.108 4.108 16 H 0.129 0.871 17 C -0.133 4.133 18 C -0.124 4.124 19 C -0.111 4.111 20 H 0.094 0.906 21 C 0.100 3.900 22 H 0.034 0.966 23 C -0.086 4.086 24 H 0.259 0.741 25 H 0.068 0.932 26 H 0.025 0.975 27 H 0.061 0.939 28 H 0.010 0.990 29 H 0.082 0.918 30 H 0.027 0.973 31 H 0.089 0.911 32 H 0.053 0.947 33 H 0.054 0.946 34 H 0.107 0.893 35 H 0.048 0.952 36 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.974 -8.708 6.227 13.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.185 4.185 3 Si 0.770 3.230 4 H -0.202 1.202 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.550 4.550 8 H 0.065 0.935 9 C 0.019 3.981 10 H 0.007 0.993 11 C -0.136 4.136 12 C -0.041 4.041 13 N -0.267 5.267 14 C -0.077 4.077 15 C -0.127 4.127 16 H 0.147 0.853 17 C -0.171 4.171 18 C -0.162 4.162 19 C -0.130 4.130 20 H 0.113 0.887 21 C -0.007 4.007 22 H 0.052 0.948 23 C -0.124 4.124 24 H 0.068 0.932 25 H 0.087 0.913 26 H 0.044 0.956 27 H 0.079 0.921 28 H 0.028 0.972 29 H 0.100 0.900 30 H 0.045 0.955 31 H 0.108 0.892 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.126 0.874 35 H 0.067 0.933 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 8.459 -8.953 6.178 13.779 hybrid contribution 0.310 2.083 -0.051 2.106 sum 8.769 -6.870 6.127 12.714 Atomic orbital electron populations 1.69981 1.06997 1.26819 1.51860 1.25646 0.95558 1.01916 0.95334 0.85776 0.78760 0.80273 0.78203 1.20182 1.20958 1.19700 1.21411 0.92460 0.91744 1.49388 0.93495 1.18745 0.93256 0.92963 0.93134 0.99297 1.21444 0.97926 0.99421 0.94798 1.21621 0.94803 0.89780 0.97895 1.62879 1.20136 1.38182 1.05456 1.22548 0.94084 0.98537 0.92534 1.23863 0.93594 0.99843 0.95397 0.85291 1.22882 0.98570 0.97916 0.97694 1.22706 0.95383 1.01454 0.96650 1.23232 0.94720 0.97947 0.97106 0.88732 1.22093 0.91303 0.95734 0.91600 0.94760 1.21393 0.97505 0.97766 0.95752 0.93153 0.91336 0.95582 0.92071 0.97222 0.89974 0.95505 0.89199 0.92807 0.92735 0.87443 0.93311 0.92878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.50 11.19 21.45 0.24 -53.26 16 2 C 0.01 0.75 5.28 84.66 0.45 1.20 16 3 Si 0.94 44.27 29.54 68.60 2.03 46.29 16 4 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 5 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 6 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 7 C -0.51 -28.33 6.98 25.60 0.18 -28.15 16 8 H 0.05 2.59 6.95 -2.91 -0.02 2.57 16 9 C 0.04 1.95 2.56 -11.39 -0.03 1.92 16 10 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 11 C -0.10 -4.86 5.36 30.75 0.16 -4.70 16 12 C 0.09 3.85 5.63 86.77 0.49 4.34 16 13 N -0.54 -20.92 4.66 -866.29 -4.03 -24.96 16 14 C 0.05 1.56 6.46 87.04 0.56 2.13 16 15 C -0.11 -2.75 5.12 -8.92 -0.05 -2.80 16 16 H 0.13 2.53 8.14 -2.39 -0.02 2.51 16 17 C -0.13 -3.30 7.10 31.06 0.22 -3.08 16 18 C -0.12 -3.08 7.60 30.94 0.24 -2.85 16 19 C -0.11 -3.28 4.68 -9.44 -0.04 -3.32 16 20 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 21 C 0.10 3.90 1.83 44.60 0.08 3.98 16 22 H 0.03 1.54 5.75 -2.38 -0.01 1.52 16 23 C -0.09 -3.74 5.15 30.59 0.16 -3.58 16 24 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 25 H 0.07 3.82 5.79 -2.39 -0.01 3.81 16 26 H 0.03 1.23 8.14 -2.38 -0.02 1.21 16 27 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 28 H 0.01 0.47 7.50 -2.39 -0.02 0.45 16 29 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 30 H 0.03 0.86 7.69 -2.39 -0.02 0.84 16 31 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.05 1.61 7.21 -2.39 -0.02 1.60 16 33 H 0.05 1.50 8.14 -2.39 -0.02 1.49 16 34 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.05 2.06 8.14 -2.38 -0.02 2.04 16 36 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 Total: -1.00 -60.38 269.22 1.68 -58.69 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: 1.04 Total: 8.15 kcal Atomic # 6 Polarization: -37.33 SS G_CDS: 2.42 Total: -34.91 kcal Atomic # 7 Polarization: -74.43 SS G_CDS: -3.79 Total: -78.22 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.29 kcal Total: -60.38 1.68 -58.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709933319.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.750 kcal (2) G-P(sol) polarization free energy of solvation -60.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.694 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds