Wall clock time and date at job start Mon Mar 30 2020 03:22:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 H 1.09001 * 109.24812 * 60.54231 * 9 7 2 11 11 C 1.52829 * 109.25100 * 301.11502 * 9 7 2 12 12 C 1.53628 * 110.64630 * 185.84200 * 11 9 7 13 13 N 1.45547 * 107.87621 * 57.13296 * 12 11 9 14 14 C 1.46866 * 117.85070 * 174.39229 * 13 12 11 15 15 C 1.54547 * 106.45504 * 150.93088 * 14 13 12 16 16 H 1.09001 * 115.34687 * 227.97236 * 15 14 13 17 17 C 1.53391 * 113.71082 * 90.85789 * 15 14 13 18 18 C 1.53577 * 87.83409 * 278.62576 * 17 15 14 19 19 C 1.53821 * 87.87511 * 335.94126 * 18 17 15 20 20 H 1.08997 * 116.85887 * 263.18398 * 19 18 17 21 21 C 1.48665 * 109.68733 * 294.68938 * 13 12 11 22 22 H 1.08998 * 111.12851 * 308.06373 * 21 13 12 23 23 C 1.52361 * 107.35321 * 69.54911 * 21 13 12 24 24 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 25 25 H 1.08994 * 109.24417 * 306.15000 * 11 9 7 26 26 H 1.09005 * 109.23990 * 65.54818 * 11 9 7 27 27 H 1.09002 * 109.78649 * 297.53274 * 12 11 9 28 28 H 1.09003 * 109.77815 * 176.72083 * 12 11 9 29 29 H 1.09001 * 109.44946 * 31.92834 * 14 13 12 30 30 H 1.08996 * 110.50039 * 270.50507 * 14 13 12 31 31 H 1.08998 * 113.49391 * 163.88514 * 17 15 14 32 32 H 1.09003 * 113.54648 * 33.37787 * 17 15 14 33 33 H 1.09005 * 113.48138 * 221.18715 * 18 17 15 34 34 H 1.08998 * 113.54069 * 90.70066 * 18 17 15 35 35 H 1.08997 * 109.83691 * 177.61772 * 23 21 13 36 36 H 1.09008 * 109.83652 * 56.65654 * 23 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6328 -2.5571 -0.8963 11 6 0.3539 -2.5630 1.2351 12 6 -0.3199 -3.9393 1.3448 13 7 0.7284 -4.9484 1.3785 14 6 0.3307 -6.3434 1.6083 15 6 1.3823 -7.2219 0.8936 16 1 0.9781 -8.0152 0.2649 17 6 2.5653 -7.6173 1.7864 18 6 3.1733 -6.2380 1.4920 19 6 2.3432 -6.2121 0.1972 20 1 2.8482 -6.5219 -0.7177 21 6 1.4559 -4.9584 0.0821 22 1 0.7643 -5.0446 -0.7559 23 6 2.2539 -3.6631 -0.0012 24 1 -0.4850 0.8401 0.0004 25 1 0.9563 -2.3858 2.1260 26 1 -0.4135 -1.7923 1.1620 27 1 -0.9637 -4.1049 0.4809 28 1 -0.9096 -3.9893 2.2601 29 1 -0.6561 -6.5150 1.1783 30 1 0.3185 -6.5661 2.6752 31 1 3.1525 -8.4449 1.3885 32 1 2.2933 -7.7579 2.8326 33 1 4.2490 -6.2657 1.3179 34 1 2.8819 -5.4716 2.2101 35 1 2.8383 -3.6472 -0.9211 36 1 2.9165 -3.5809 0.8605 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709933324.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:17 Heat of formation + Delta-G solvation = 21.220828 kcal Electronic energy + Delta-G solvation = -15871.871853 eV Core-core repulsion = 13548.990381 eV Total energy + Delta-G solvation = -2322.881472 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 221.148 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.51476 -36.34888 -33.37372 -31.36431 -29.89773 -27.78778 -25.29491 -24.66626 -23.04609 -21.53973 -20.24863 -18.68880 -18.19965 -16.32967 -15.83954 -14.63178 -14.54293 -14.04404 -13.92728 -13.25963 -12.81349 -12.59461 -12.19565 -12.13699 -11.44710 -11.32934 -11.30968 -10.88423 -10.74299 -10.43549 -10.28286 -10.20637 -9.99366 -9.84446 -9.69606 -9.29079 -8.81607 -8.66034 -8.24716 -7.62472 -5.92835 -3.98084 3.34070 3.40561 3.44020 4.46569 4.51957 4.65869 4.88119 4.93497 5.21469 5.36741 5.48748 5.69659 5.82957 5.90765 5.95819 5.99786 6.04044 6.08876 6.16735 6.28927 6.31524 6.40609 6.61178 6.63444 6.71310 6.84228 6.99637 7.13474 7.25317 7.51664 7.68621 7.77063 7.98714 8.12390 8.23015 8.53838 9.05892 9.66037 11.12890 Molecular weight = 221.15amu Principal moments of inertia in cm(-1) A = 0.052053 B = 0.007720 C = 0.007118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.779646 B = 3625.971655 C = 3932.903052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.889 3.111 4 H -0.281 1.281 5 H -0.275 1.275 6 H -0.288 1.288 7 C -0.508 4.508 8 H 0.054 0.946 9 C 0.048 3.952 10 H 0.017 0.983 11 C -0.100 4.100 12 C 0.062 3.938 13 N -0.532 5.532 14 C 0.066 3.934 15 C -0.126 4.126 16 H 0.079 0.921 17 C -0.129 4.129 18 C -0.119 4.119 19 C -0.112 4.112 20 H 0.097 0.903 21 C 0.077 3.923 22 H 0.044 0.956 23 C -0.091 4.091 24 H 0.258 0.742 25 H 0.043 0.957 26 H 0.092 0.908 27 H 0.020 0.980 28 H 0.054 0.946 29 H 0.030 0.970 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.063 0.937 33 H 0.056 0.944 34 H 0.100 0.900 35 H 0.046 0.954 36 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.920 -12.342 2.214 12.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.141 4.141 3 Si 0.718 3.282 4 H -0.208 1.208 5 H -0.200 1.200 6 H -0.214 1.214 7 C -0.547 4.547 8 H 0.073 0.927 9 C 0.029 3.971 10 H 0.035 0.965 11 C -0.138 4.138 12 C -0.066 4.066 13 N -0.258 5.258 14 C -0.062 4.062 15 C -0.145 4.145 16 H 0.097 0.903 17 C -0.166 4.166 18 C -0.157 4.157 19 C -0.131 4.131 20 H 0.115 0.885 21 C -0.031 4.031 22 H 0.062 0.938 23 C -0.129 4.129 24 H 0.068 0.932 25 H 0.061 0.939 26 H 0.110 0.890 27 H 0.038 0.962 28 H 0.072 0.928 29 H 0.048 0.952 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.119 0.881 35 H 0.065 0.935 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.020 -12.041 2.637 12.491 hybrid contribution -0.286 0.651 -0.658 0.968 sum 1.734 -11.391 1.979 11.691 Atomic orbital electron populations 1.69872 1.05867 1.26204 1.51347 1.24975 0.94834 0.98995 0.95290 0.86637 0.79883 0.83688 0.78034 1.20759 1.20000 1.21369 1.21242 0.92906 0.90694 1.49822 0.92744 1.18711 0.92571 0.91865 0.93937 0.96467 1.21690 1.00510 0.92282 0.99367 1.22169 0.92148 0.93881 0.98365 1.62820 1.27628 1.03463 1.31897 1.22271 0.95447 0.88827 0.99669 1.23405 0.94982 0.97791 0.98326 0.90281 1.22686 0.97043 0.97642 0.99244 1.22741 0.97941 0.97225 0.97755 1.23472 0.96620 0.95466 0.97561 0.88507 1.22516 0.94941 0.95575 0.90035 0.93850 1.21544 0.98299 0.92953 1.00090 0.93159 0.93855 0.88954 0.96220 0.92760 0.95152 0.91046 0.90967 0.91870 0.92553 0.88128 0.93541 0.92158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.72 11.28 55.43 0.63 -25.09 16 2 C 0.06 1.66 5.29 -17.82 -0.09 1.57 16 3 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 7 C -0.51 -14.14 8.56 -34.44 -0.29 -14.43 16 8 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.05 1.20 2.17 -91.53 -0.20 1.01 16 10 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 11 C -0.10 -2.41 5.02 -26.49 -0.13 -2.55 16 12 C 0.06 1.25 5.89 -4.23 -0.02 1.23 16 13 N -0.53 -9.80 3.60 -224.72 -0.81 -10.61 16 14 C 0.07 1.01 6.30 -3.03 -0.02 0.99 16 15 C -0.13 -1.72 5.08 -88.10 -0.45 -2.16 16 16 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 17 C -0.13 -1.58 7.63 -26.23 -0.20 -1.78 16 18 C -0.12 -1.72 6.74 -26.00 -0.18 -1.90 16 19 C -0.11 -1.70 4.88 -88.16 -0.43 -2.13 16 20 H 0.10 1.34 8.14 -51.93 -0.42 0.92 16 21 C 0.08 1.43 2.38 -66.53 -0.16 1.27 16 22 H 0.04 0.85 8.05 -51.93 -0.42 0.43 16 23 C -0.09 -1.94 4.77 -26.72 -0.13 -2.07 16 24 H 0.26 7.11 8.31 -40.82 -0.34 6.78 16 25 H 0.04 1.08 8.13 -51.93 -0.42 0.66 16 26 H 0.09 2.46 6.12 -51.93 -0.32 2.15 16 27 H 0.02 0.41 8.04 -51.93 -0.42 -0.01 16 28 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 29 H 0.03 0.46 8.03 -51.93 -0.42 0.04 16 30 H 0.07 1.03 7.92 -51.93 -0.41 0.62 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.06 0.75 7.99 -51.93 -0.41 0.33 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.10 1.68 6.96 -51.93 -0.36 1.32 16 35 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.06 1.32 7.56 -51.92 -0.39 0.93 16 LS Contribution 272.28 15.07 4.10 4.10 Total: -1.00 -27.97 272.28 -9.48 -37.45 By element: Atomic # 1 Polarization: 4.67 SS G_CDS: -6.07 Total: -1.40 kcal Atomic # 6 Polarization: -18.65 SS G_CDS: -2.30 Total: -20.96 kcal Atomic # 7 Polarization: -35.52 SS G_CDS: -0.18 Total: -35.70 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -27.97 -9.48 -37.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709933324.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.668 kcal (2) G-P(sol) polarization free energy of solvation -27.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.447 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds