Wall clock time and date at job start Mon Mar 30 2020 03:22:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 H 1.09001 * 109.24812 * 60.54231 * 9 7 2 11 11 C 1.52829 * 109.25100 * 301.11502 * 9 7 2 12 12 C 1.53628 * 110.64630 * 185.84200 * 11 9 7 13 13 N 1.45547 * 107.87621 * 57.13296 * 12 11 9 14 14 C 1.46866 * 117.85070 * 174.39229 * 13 12 11 15 15 C 1.54547 * 106.45504 * 150.93088 * 14 13 12 16 16 H 1.09001 * 115.34687 * 227.97236 * 15 14 13 17 17 C 1.53391 * 113.71082 * 90.85789 * 15 14 13 18 18 C 1.53577 * 87.83409 * 278.62576 * 17 15 14 19 19 C 1.53821 * 87.87511 * 335.94126 * 18 17 15 20 20 H 1.08997 * 116.85887 * 263.18398 * 19 18 17 21 21 C 1.48665 * 109.68733 * 294.68938 * 13 12 11 22 22 H 1.08998 * 111.12851 * 308.06373 * 21 13 12 23 23 C 1.52361 * 107.35321 * 69.54911 * 21 13 12 24 24 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 25 25 H 1.08994 * 109.24417 * 306.15000 * 11 9 7 26 26 H 1.09005 * 109.23990 * 65.54818 * 11 9 7 27 27 H 1.09002 * 109.78649 * 297.53274 * 12 11 9 28 28 H 1.09003 * 109.77815 * 176.72083 * 12 11 9 29 29 H 1.09001 * 109.44946 * 31.92834 * 14 13 12 30 30 H 1.08996 * 110.50039 * 270.50507 * 14 13 12 31 31 H 1.08998 * 113.49391 * 163.88514 * 17 15 14 32 32 H 1.09003 * 113.54648 * 33.37787 * 17 15 14 33 33 H 1.09005 * 113.48138 * 221.18715 * 18 17 15 34 34 H 1.08998 * 113.54069 * 90.70066 * 18 17 15 35 35 H 1.08997 * 109.83691 * 177.61772 * 23 21 13 36 36 H 1.09008 * 109.83652 * 56.65654 * 23 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6328 -2.5571 -0.8963 11 6 0.3539 -2.5630 1.2351 12 6 -0.3199 -3.9393 1.3448 13 7 0.7284 -4.9484 1.3785 14 6 0.3307 -6.3434 1.6083 15 6 1.3823 -7.2219 0.8936 16 1 0.9781 -8.0152 0.2649 17 6 2.5653 -7.6173 1.7864 18 6 3.1733 -6.2380 1.4920 19 6 2.3432 -6.2121 0.1972 20 1 2.8482 -6.5219 -0.7177 21 6 1.4559 -4.9584 0.0821 22 1 0.7643 -5.0446 -0.7559 23 6 2.2539 -3.6631 -0.0012 24 1 -0.4850 0.8401 0.0004 25 1 0.9563 -2.3858 2.1260 26 1 -0.4135 -1.7923 1.1620 27 1 -0.9637 -4.1049 0.4809 28 1 -0.9096 -3.9893 2.2601 29 1 -0.6561 -6.5150 1.1783 30 1 0.3185 -6.5661 2.6752 31 1 3.1525 -8.4449 1.3885 32 1 2.2933 -7.7579 2.8326 33 1 4.2490 -6.2657 1.3179 34 1 2.8819 -5.4716 2.2101 35 1 2.8383 -3.6472 -0.9211 36 1 2.9165 -3.5809 0.8605 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709933324.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:17 Heat of formation + Delta-G solvation = 6.003388 kcal Electronic energy + Delta-G solvation = -15872.531731 eV Core-core repulsion = 13548.990381 eV Total energy + Delta-G solvation = -2323.541350 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 221.148 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.81996 -37.95760 -35.18869 -33.18777 -31.52396 -29.34914 -26.83104 -26.29782 -24.38234 -23.18908 -21.89467 -20.26865 -19.50177 -18.32982 -17.19239 -16.57756 -16.04436 -15.52332 -15.27341 -14.90676 -14.42824 -14.21993 -13.82284 -13.67084 -12.94058 -12.85462 -12.75810 -12.72160 -12.42220 -12.20627 -11.98412 -11.81707 -11.41511 -11.27456 -11.24345 -10.88780 -10.65804 -10.48776 -10.35540 -9.11269 -8.07683 -6.21710 1.40592 1.41059 1.51507 2.43478 3.09505 3.18460 3.48580 3.70761 3.79807 4.07340 4.23902 4.38428 4.45532 4.51386 4.54648 4.74083 4.75812 4.78261 4.86282 4.93069 4.98833 5.04513 5.09567 5.17826 5.24199 5.25359 5.34756 5.50989 5.58773 5.64042 5.77775 5.99495 6.06268 6.28138 6.40254 6.49866 6.90209 7.46019 8.96329 Molecular weight = 221.15amu Principal moments of inertia in cm(-1) A = 0.052053 B = 0.007720 C = 0.007118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.779646 B = 3625.971655 C = 3932.903052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.011 3.989 3 Si 0.954 3.046 4 H -0.276 1.276 5 H -0.268 1.268 6 H -0.283 1.283 7 C -0.533 4.533 8 H 0.051 0.949 9 C 0.045 3.955 10 H -0.017 1.017 11 C -0.089 4.089 12 C 0.073 3.927 13 N -0.540 5.540 14 C 0.062 3.938 15 C -0.117 4.117 16 H 0.101 0.899 17 C -0.112 4.112 18 C -0.125 4.125 19 C -0.114 4.114 20 H 0.114 0.886 21 C 0.077 3.923 22 H 0.030 0.970 23 C -0.080 4.080 24 H 0.260 0.740 25 H 0.027 0.973 26 H 0.061 0.939 27 H 0.012 0.988 28 H 0.071 0.929 29 H 0.034 0.966 30 H 0.084 0.916 31 H 0.097 0.903 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.074 0.926 35 H 0.045 0.955 36 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.829 -14.169 2.634 14.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.187 4.187 3 Si 0.780 3.220 4 H -0.201 1.201 5 H -0.193 1.193 6 H -0.208 1.208 7 C -0.571 4.571 8 H 0.069 0.931 9 C 0.026 3.974 10 H 0.001 0.999 11 C -0.128 4.128 12 C -0.055 4.055 13 N -0.265 5.265 14 C -0.065 4.065 15 C -0.136 4.136 16 H 0.119 0.881 17 C -0.149 4.149 18 C -0.162 4.162 19 C -0.132 4.132 20 H 0.132 0.868 21 C -0.031 4.031 22 H 0.048 0.952 23 C -0.118 4.118 24 H 0.069 0.931 25 H 0.046 0.954 26 H 0.080 0.920 27 H 0.031 0.969 28 H 0.089 0.911 29 H 0.053 0.947 30 H 0.102 0.898 31 H 0.115 0.885 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.092 0.908 35 H 0.064 0.936 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.935 -13.886 3.061 14.520 hybrid contribution -0.582 1.248 -0.798 1.591 sum 2.353 -12.639 2.263 13.054 Atomic orbital electron populations 1.70016 1.07184 1.27020 1.51683 1.25766 0.95703 1.02418 0.94846 0.85618 0.78758 0.79418 0.78241 1.20126 1.19298 1.20847 1.21610 0.93000 0.92276 1.50220 0.93115 1.18697 0.93048 0.92850 0.92805 0.99935 1.21430 0.99278 0.94133 0.97957 1.21905 0.92241 0.92486 0.98866 1.62741 1.26976 1.05116 1.31710 1.22409 0.96398 0.86837 1.00850 1.23407 0.94502 0.97393 0.98285 0.88097 1.22647 0.95858 0.96780 0.99632 1.22713 0.98623 0.98204 0.96676 1.23569 0.97016 0.93825 0.98832 0.86761 1.22443 0.95157 0.95752 0.89750 0.95159 1.21349 0.97457 0.93293 0.99674 0.93094 0.95431 0.92016 0.96948 0.91076 0.94726 0.89788 0.88477 0.91087 0.91515 0.90761 0.93580 0.92819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.52 11.28 21.45 0.24 -54.27 16 2 C 0.01 0.62 5.29 84.66 0.45 1.06 16 3 Si 0.95 44.75 29.54 68.60 2.03 46.77 16 4 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 5 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 6 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 7 C -0.53 -30.56 8.56 25.60 0.22 -30.34 16 8 H 0.05 2.86 7.74 -2.91 -0.02 2.84 16 9 C 0.04 2.34 2.17 -11.38 -0.02 2.32 16 10 H -0.02 -1.03 8.14 -2.39 -0.02 -1.05 16 11 C -0.09 -4.49 5.02 30.75 0.15 -4.33 16 12 C 0.07 2.99 5.89 86.77 0.51 3.50 16 13 N -0.54 -19.47 3.60 -864.88 -3.11 -22.58 16 14 C 0.06 1.75 6.30 86.84 0.55 2.29 16 15 C -0.12 -2.75 5.08 -9.16 -0.05 -2.80 16 16 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 17 C -0.11 -2.27 7.63 30.92 0.24 -2.04 16 18 C -0.12 -3.28 6.74 31.07 0.21 -3.07 16 19 C -0.11 -3.15 4.88 -9.20 -0.04 -3.20 16 20 H 0.11 2.80 8.14 -2.39 -0.02 2.78 16 21 C 0.08 2.81 2.38 44.71 0.11 2.92 16 22 H 0.03 1.19 8.05 -2.39 -0.02 1.17 16 23 C -0.08 -3.48 4.77 30.60 0.15 -3.33 16 24 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 25 H 0.03 1.41 8.13 -2.39 -0.02 1.39 16 26 H 0.06 3.45 6.12 -2.38 -0.01 3.44 16 27 H 0.01 0.52 8.04 -2.39 -0.02 0.50 16 28 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 29 H 0.03 0.95 8.03 -2.39 -0.02 0.93 16 30 H 0.08 2.17 7.92 -2.39 -0.02 2.15 16 31 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.07 1.37 7.99 -2.39 -0.02 1.35 16 33 H 0.07 1.60 8.14 -2.38 -0.02 1.58 16 34 H 0.07 2.37 6.96 -2.39 -0.02 2.36 16 35 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.05 2.38 7.56 -2.38 -0.02 2.37 16 Total: -1.00 -61.64 272.28 2.65 -59.00 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: 1.03 Total: 8.10 kcal Atomic # 6 Polarization: -39.48 SS G_CDS: 2.46 Total: -37.02 kcal Atomic # 7 Polarization: -73.98 SS G_CDS: -2.87 Total: -76.85 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.77 kcal Total: -61.64 2.65 -59.00 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709933324.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.001 kcal (2) G-P(sol) polarization free energy of solvation -61.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.998 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds