Wall clock time and date at job start Mon Mar 30 2020 03:22:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00112 * 2 1 4 4 H 1.48500 * 109.46986 * 270.00107 * 3 2 1 5 5 H 1.48496 * 109.47029 * 30.00124 * 3 2 1 6 6 H 1.48499 * 109.47352 * 149.99954 * 3 2 1 7 7 C 1.37885 * 120.00035 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99675 * 179.72276 * 7 2 1 9 9 C 1.50695 * 119.99721 * 0.02562 * 7 2 1 10 10 H 1.09001 * 108.89068 * 58.63906 * 9 7 2 11 11 C 1.52598 * 108.90983 * 299.99888 * 9 7 2 12 12 C 1.54585 * 111.33074 * 290.58509 * 11 9 7 13 13 N 1.41938 * 106.32530 * 308.87727 * 12 11 9 14 14 C 1.45302 * 129.90147 * 212.07202 * 13 12 11 15 15 C 1.49740 * 97.67916 * 170.23497 * 14 13 12 16 16 H 1.09001 * 106.45714 * 297.23581 * 15 14 13 17 17 C 1.45924 * 144.05744 * 139.26854 * 15 14 13 18 18 C 1.55234 * 81.18056 * 222.92063 * 17 15 14 19 19 C 1.52486 * 79.40110 * 48.16421 * 18 17 15 20 20 H 1.08991 * 115.54921 * 70.87327 * 19 18 17 21 21 C 1.49378 * 113.55996 * 65.84473 * 13 12 11 22 22 H 1.09002 * 111.64107 * 45.45814 * 21 13 12 23 23 C 1.53690 * 102.80744 * 285.14920 * 21 13 12 24 24 H 0.97000 * 119.99706 * 359.97438 * 1 2 3 25 25 H 1.08994 * 109.10772 * 51.06781 * 11 9 7 26 26 H 1.09000 * 109.10747 * 170.17651 * 11 9 7 27 27 H 1.09004 * 110.07338 * 68.08035 * 12 11 9 28 28 H 1.09001 * 110.07962 * 189.55785 * 12 11 9 29 29 H 1.08994 * 111.73569 * 287.36649 * 14 13 12 30 30 H 1.09005 * 111.73621 * 53.11120 * 14 13 12 31 31 H 1.09004 * 114.67269 * 335.00926 * 17 15 14 32 32 H 1.09000 * 114.66875 * 109.16255 * 17 15 14 33 33 H 1.08993 * 115.47752 * 295.62689 * 18 17 15 34 34 H 1.09009 * 114.48749 * 160.70576 * 18 17 15 35 35 H 1.09002 * 110.23901 * 306.05577 * 23 21 13 36 36 H 1.09004 * 110.23830 * 184.03332 * 23 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 -0.0040 9 6 1.2510 -2.4991 0.0005 10 1 0.6101 -2.5366 -0.8803 11 6 0.3782 -2.5662 1.2504 12 6 1.2357 -2.7187 2.5276 13 7 2.1166 -3.8059 2.2893 14 6 2.6688 -4.7786 3.2167 15 6 3.2659 -5.7049 2.2030 16 1 2.4359 -6.0927 1.6123 17 6 4.4293 -6.5315 1.8984 18 6 4.2200 -5.8906 0.5001 19 6 4.1461 -4.6540 1.3893 20 1 5.0884 -4.3415 1.8391 21 6 3.1105 -3.5425 1.2056 22 1 3.5640 -2.5566 1.3071 23 6 2.2621 -3.6593 -0.0705 24 1 -0.4850 0.8401 0.0004 25 1 -0.2113 -1.6524 1.3234 26 1 -0.2952 -3.4195 1.1700 27 1 1.8061 -1.8072 2.7063 28 1 0.5966 -2.9335 3.3840 29 1 3.4311 -4.3370 3.8584 30 1 1.8889 -5.2678 3.8004 31 1 5.3507 -6.2190 2.3898 32 1 4.2499 -7.6055 1.9482 33 1 3.2870 -6.1503 0.0002 34 1 5.0928 -5.9332 -0.1516 35 1 1.7385 -4.6151 -0.0891 36 1 2.8929 -3.5562 -0.9535 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709933331.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:20 Heat of formation + Delta-G solvation = 105.468503 kcal Electronic energy + Delta-G solvation = -16142.456078 eV Core-core repulsion = 13823.227859 eV Total energy + Delta-G solvation = -2319.228219 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 221.148 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.25037 -36.87355 -33.53678 -31.29406 -29.97294 -27.70467 -24.74319 -24.41254 -23.05492 -21.41141 -20.36977 -19.58086 -18.28513 -15.73686 -15.45494 -14.83782 -14.44231 -14.32579 -13.46912 -13.30817 -12.79779 -12.52552 -12.17354 -11.80347 -11.47866 -11.30818 -10.99897 -10.88376 -10.78776 -10.56830 -10.40727 -10.27402 -9.84200 -9.72297 -9.27195 -9.07144 -8.64264 -8.47324 -8.20137 -6.80461 -5.90671 -3.95727 3.32593 3.39579 3.42361 4.05137 4.43904 4.48698 4.73951 5.05750 5.22867 5.38874 5.69071 5.72478 5.80667 5.91031 5.95148 6.05848 6.13677 6.25858 6.36395 6.47212 6.49127 6.57247 6.67106 6.75283 6.83237 6.86569 7.10016 7.20672 7.42123 7.63717 7.79959 7.88463 8.11225 8.30722 8.57666 8.75739 9.07989 9.67358 11.14272 Molecular weight = 221.15amu Principal moments of inertia in cm(-1) A = 0.042309 B = 0.009037 C = 0.008540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.643133 B = 3097.736380 C = 3277.939258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.059 3.941 3 Si 0.884 3.116 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.502 4.502 8 H 0.053 0.947 9 C 0.045 3.955 10 H 0.019 0.981 11 C -0.105 4.105 12 C 0.140 3.860 13 N -0.657 5.657 14 C 0.149 3.851 15 C -0.155 4.155 16 H 0.085 0.915 17 C -0.098 4.098 18 C -0.117 4.117 19 C -0.165 4.165 20 H 0.100 0.900 21 C 0.131 3.869 22 H 0.067 0.933 23 C -0.089 4.089 24 H 0.258 0.742 25 H 0.094 0.906 26 H 0.015 0.985 27 H 0.028 0.972 28 H 0.040 0.960 29 H 0.021 0.979 30 H 0.063 0.937 31 H 0.080 0.920 32 H 0.058 0.942 33 H 0.095 0.905 34 H 0.059 0.941 35 H 0.041 0.959 36 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.085 -9.742 4.222 12.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.141 4.141 3 Si 0.713 3.287 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.540 4.540 8 H 0.071 0.929 9 C 0.027 3.973 10 H 0.037 0.963 11 C -0.144 4.144 12 C 0.014 3.986 13 N -0.387 5.387 14 C 0.023 3.977 15 C -0.175 4.175 16 H 0.103 0.897 17 C -0.136 4.136 18 C -0.154 4.154 19 C -0.184 4.184 20 H 0.118 0.882 21 C 0.026 3.974 22 H 0.085 0.915 23 C -0.127 4.127 24 H 0.068 0.932 25 H 0.112 0.888 26 H 0.034 0.966 27 H 0.046 0.954 28 H 0.058 0.942 29 H 0.039 0.961 30 H 0.081 0.919 31 H 0.099 0.901 32 H 0.076 0.924 33 H 0.113 0.887 34 H 0.078 0.922 35 H 0.060 0.940 36 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 5.631 -9.703 4.179 11.972 hybrid contribution 0.749 1.475 0.304 1.682 sum 6.380 -8.228 4.483 11.336 Atomic orbital electron populations 1.69859 1.05785 1.26070 1.51454 1.24946 0.94770 0.98771 0.95659 0.86722 0.79899 0.84129 0.77996 1.20842 1.21383 1.20157 1.21290 0.92691 0.90768 1.49254 0.92930 1.18705 0.92870 0.91832 0.93926 0.96274 1.21866 0.97445 1.00443 0.94627 1.20697 0.91998 0.88347 0.97523 1.53720 1.32279 1.30809 1.21902 1.20096 0.95888 0.90393 0.91274 1.22427 0.96634 0.97562 1.00849 0.89658 1.21864 0.97063 0.97900 0.96755 1.23195 1.01703 0.96123 0.94374 1.24487 0.98248 0.94009 1.01647 0.88225 1.21987 0.88771 0.95729 0.90880 0.91468 1.21889 0.97688 0.98540 0.94621 0.93204 0.88807 0.96582 0.95364 0.94179 0.96095 0.91881 0.90129 0.92358 0.88700 0.92244 0.94017 0.93858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.58 11.25 55.43 0.62 -24.96 16 2 C 0.06 1.62 5.26 -17.82 -0.09 1.53 16 3 Si 0.88 21.47 29.54 -169.99 -5.02 16.45 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 7 C -0.50 -13.63 7.13 -34.44 -0.25 -13.88 16 8 H 0.05 1.43 6.67 -52.48 -0.35 1.08 16 9 C 0.05 1.14 2.46 -91.43 -0.23 0.92 16 10 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 11 C -0.11 -2.56 5.40 -26.10 -0.14 -2.70 16 12 C 0.14 3.05 6.44 -5.59 -0.04 3.01 16 13 N -0.66 -12.93 3.01 -230.46 -0.69 -13.63 16 14 C 0.15 2.42 7.28 -6.30 -0.05 2.38 16 15 C -0.16 -2.30 4.38 -111.59 -0.49 -2.79 16 16 H 0.09 1.38 6.74 -51.93 -0.35 1.03 16 17 C -0.10 -1.19 7.90 -47.58 -0.38 -1.56 16 18 C -0.12 -1.58 7.55 -45.41 -0.34 -1.93 16 19 C -0.17 -2.62 4.53 -105.96 -0.48 -3.10 16 20 H 0.10 1.49 7.58 -51.93 -0.39 1.10 16 21 C 0.13 2.62 2.95 -65.96 -0.19 2.42 16 22 H 0.07 1.53 6.37 -51.93 -0.33 1.20 16 23 C -0.09 -1.92 4.63 -25.82 -0.12 -2.04 16 24 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 25 H 0.09 2.54 5.78 -51.93 -0.30 2.24 16 26 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.03 0.67 7.89 -51.93 -0.41 0.26 16 28 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 29 H 0.02 0.34 8.13 -51.93 -0.42 -0.08 16 30 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 31 H 0.08 0.90 7.45 -51.93 -0.39 0.52 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.09 1.35 6.38 -51.93 -0.33 1.02 16 34 H 0.06 0.74 8.14 -51.92 -0.42 0.31 16 35 H 0.04 0.86 7.37 -51.93 -0.38 0.48 16 36 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 266.68 15.07 4.02 4.02 Total: -1.00 -27.91 266.68 -9.61 -37.52 By element: Atomic # 1 Polarization: 4.08 SS G_CDS: -5.75 Total: -1.67 kcal Atomic # 6 Polarization: -14.94 SS G_CDS: -2.79 Total: -17.73 kcal Atomic # 7 Polarization: -38.52 SS G_CDS: -0.07 Total: -38.59 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -27.91 -9.61 -37.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709933331.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.988 kcal (2) G-P(sol) polarization free energy of solvation -27.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.519 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds