Wall clock time and date at job start Mon Mar 30 2020 03:22:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00112 * 2 1 4 4 H 1.48500 * 109.46986 * 270.00107 * 3 2 1 5 5 H 1.48496 * 109.47029 * 30.00124 * 3 2 1 6 6 H 1.48499 * 109.47352 * 149.99954 * 3 2 1 7 7 C 1.37885 * 120.00035 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99675 * 179.72276 * 7 2 1 9 9 C 1.50695 * 119.99721 * 0.02562 * 7 2 1 10 10 H 1.09001 * 108.89068 * 58.63906 * 9 7 2 11 11 C 1.52598 * 108.90983 * 299.99888 * 9 7 2 12 12 C 1.54585 * 111.33074 * 290.58509 * 11 9 7 13 13 N 1.41938 * 106.32530 * 308.87727 * 12 11 9 14 14 C 1.45302 * 129.90147 * 212.07202 * 13 12 11 15 15 C 1.49740 * 97.67916 * 170.23497 * 14 13 12 16 16 H 1.09001 * 106.45714 * 297.23581 * 15 14 13 17 17 C 1.45924 * 144.05744 * 139.26854 * 15 14 13 18 18 C 1.55234 * 81.18056 * 222.92063 * 17 15 14 19 19 C 1.52486 * 79.40110 * 48.16421 * 18 17 15 20 20 H 1.08991 * 115.54921 * 70.87327 * 19 18 17 21 21 C 1.49378 * 113.55996 * 65.84473 * 13 12 11 22 22 H 1.09002 * 111.64107 * 45.45814 * 21 13 12 23 23 C 1.53690 * 102.80744 * 285.14920 * 21 13 12 24 24 H 0.97000 * 119.99706 * 359.97438 * 1 2 3 25 25 H 1.08994 * 109.10772 * 51.06781 * 11 9 7 26 26 H 1.09000 * 109.10747 * 170.17651 * 11 9 7 27 27 H 1.09004 * 110.07338 * 68.08035 * 12 11 9 28 28 H 1.09001 * 110.07962 * 189.55785 * 12 11 9 29 29 H 1.08994 * 111.73569 * 287.36649 * 14 13 12 30 30 H 1.09005 * 111.73621 * 53.11120 * 14 13 12 31 31 H 1.09004 * 114.67269 * 335.00926 * 17 15 14 32 32 H 1.09000 * 114.66875 * 109.16255 * 17 15 14 33 33 H 1.08993 * 115.47752 * 295.62689 * 18 17 15 34 34 H 1.09009 * 114.48749 * 160.70576 * 18 17 15 35 35 H 1.09002 * 110.23901 * 306.05577 * 23 21 13 36 36 H 1.09004 * 110.23830 * 184.03332 * 23 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 -0.0040 9 6 1.2510 -2.4991 0.0005 10 1 0.6101 -2.5366 -0.8803 11 6 0.3782 -2.5662 1.2504 12 6 1.2357 -2.7187 2.5276 13 7 2.1166 -3.8059 2.2893 14 6 2.6688 -4.7786 3.2167 15 6 3.2659 -5.7049 2.2030 16 1 2.4359 -6.0927 1.6123 17 6 4.4293 -6.5315 1.8984 18 6 4.2200 -5.8906 0.5001 19 6 4.1461 -4.6540 1.3893 20 1 5.0884 -4.3415 1.8391 21 6 3.1105 -3.5425 1.2056 22 1 3.5640 -2.5566 1.3071 23 6 2.2621 -3.6593 -0.0705 24 1 -0.4850 0.8401 0.0004 25 1 -0.2113 -1.6524 1.3234 26 1 -0.2952 -3.4195 1.1700 27 1 1.8061 -1.8072 2.7063 28 1 0.5966 -2.9335 3.3840 29 1 3.4311 -4.3370 3.8584 30 1 1.8889 -5.2678 3.8004 31 1 5.3507 -6.2190 2.3898 32 1 4.2499 -7.6055 1.9482 33 1 3.2870 -6.1503 0.0002 34 1 5.0928 -5.9332 -0.1516 35 1 1.7385 -4.6151 -0.0891 36 1 2.8929 -3.5562 -0.9535 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709933331.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:19 Heat of formation + Delta-G solvation = 90.730697 kcal Electronic energy + Delta-G solvation = -16143.095158 eV Core-core repulsion = 13823.227859 eV Total energy + Delta-G solvation = -2319.867298 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 221.148 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.54137 -38.52841 -35.33638 -33.20267 -31.65310 -29.30006 -26.77899 -25.89175 -24.22901 -23.12536 -21.72113 -21.07164 -20.05423 -17.75521 -17.04342 -16.47807 -16.26185 -15.55823 -15.03481 -14.91254 -14.53490 -14.20466 -13.85503 -13.35901 -13.08591 -12.77202 -12.69377 -12.54466 -12.45369 -12.26655 -11.81913 -11.73226 -11.67935 -11.31207 -11.11009 -10.86514 -10.67132 -10.35350 -9.70543 -8.44249 -8.04815 -6.16632 1.37794 1.38816 1.48050 2.43071 2.82038 2.99776 3.21575 3.68933 3.90306 4.02745 4.29218 4.35745 4.47436 4.61229 4.68278 4.68798 4.77838 4.81699 4.89367 5.01722 5.06459 5.09087 5.20652 5.22587 5.24810 5.39308 5.49187 5.55023 5.59868 5.66169 5.70245 5.86899 6.17248 6.42039 6.52900 6.94044 7.17503 7.49261 8.99210 Molecular weight = 221.15amu Principal moments of inertia in cm(-1) A = 0.042309 B = 0.009037 C = 0.008540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.643133 B = 3097.736380 C = 3277.939258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.010 3.990 3 Si 0.946 3.054 4 H -0.277 1.277 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.510 4.510 8 H 0.048 0.952 9 C 0.040 3.960 10 H -0.021 1.021 11 C -0.100 4.100 12 C 0.152 3.848 13 N -0.663 5.663 14 C 0.145 3.855 15 C -0.140 4.140 16 H 0.071 0.929 17 C -0.077 4.077 18 C -0.116 4.116 19 C -0.173 4.173 20 H 0.115 0.885 21 C 0.131 3.869 22 H 0.034 0.966 23 C -0.077 4.077 24 H 0.258 0.742 25 H 0.063 0.937 26 H 0.017 0.983 27 H 0.002 0.998 28 H 0.060 0.940 29 H 0.030 0.970 30 H 0.078 0.922 31 H 0.098 0.902 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.075 0.925 35 H 0.049 0.951 36 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.936 -11.251 5.220 14.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.188 4.188 3 Si 0.772 3.228 4 H -0.203 1.203 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.548 4.548 8 H 0.066 0.934 9 C 0.022 3.978 10 H -0.003 1.003 11 C -0.139 4.139 12 C 0.026 3.974 13 N -0.393 5.393 14 C 0.021 3.979 15 C -0.160 4.160 16 H 0.089 0.911 17 C -0.114 4.114 18 C -0.154 4.154 19 C -0.191 4.191 20 H 0.133 0.867 21 C 0.025 3.975 22 H 0.052 0.948 23 C -0.115 4.115 24 H 0.067 0.933 25 H 0.081 0.919 26 H 0.036 0.964 27 H 0.020 0.980 28 H 0.079 0.921 29 H 0.048 0.952 30 H 0.096 0.904 31 H 0.116 0.884 32 H 0.099 0.901 33 H 0.103 0.897 34 H 0.094 0.906 35 H 0.068 0.932 36 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 7.498 -11.235 5.182 14.467 hybrid contribution 0.124 1.937 -0.044 1.941 sum 7.622 -9.298 5.138 13.075 Atomic orbital electron populations 1.70005 1.07064 1.26744 1.52156 1.25676 0.95569 1.02015 0.95493 0.85745 0.78755 0.80191 0.78110 1.20291 1.21011 1.19634 1.21494 0.92540 0.91810 1.48961 0.93367 1.18733 0.93226 0.93111 0.92747 1.00261 1.21714 0.97485 0.98911 0.95744 1.20384 0.92107 0.88354 0.96604 1.53764 1.32252 1.30223 1.23031 1.20254 0.96647 0.89751 0.91267 1.22435 0.96998 0.97454 0.99085 0.91089 1.21805 0.96224 0.98782 0.94596 1.23201 1.02044 0.94587 0.95533 1.24631 0.97982 0.92895 1.03627 0.86681 1.21831 0.89759 0.95960 0.89915 0.94837 1.21726 0.96950 0.97076 0.95797 0.93256 0.91884 0.96376 0.97997 0.92117 0.95179 0.90398 0.88352 0.90079 0.89665 0.90646 0.93219 0.94138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.44 11.25 21.45 0.24 -54.20 16 2 C 0.01 0.57 5.26 84.66 0.45 1.01 16 3 Si 0.95 44.78 29.54 68.60 2.03 46.81 16 4 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 5 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 6 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 7 C -0.51 -28.57 7.13 25.60 0.18 -28.39 16 8 H 0.05 2.69 6.67 -2.91 -0.02 2.67 16 9 C 0.04 2.12 2.46 -11.32 -0.03 2.10 16 10 H -0.02 -1.23 8.14 -2.39 -0.02 -1.25 16 11 C -0.10 -5.00 5.40 31.00 0.17 -4.84 16 12 C 0.15 6.67 6.44 87.75 0.57 7.24 16 13 N -0.66 -25.49 3.01 -883.03 -2.65 -28.14 16 14 C 0.14 4.32 7.28 85.56 0.62 4.95 16 15 C -0.14 -3.68 4.38 -24.38 -0.11 -3.79 16 16 H 0.07 2.10 6.74 -2.39 -0.02 2.08 16 17 C -0.08 -1.49 7.90 17.09 0.14 -1.36 16 18 C -0.12 -2.77 7.55 18.50 0.14 -2.64 16 19 C -0.17 -5.04 4.53 -20.73 -0.09 -5.14 16 20 H 0.12 3.06 7.58 -2.39 -0.02 3.04 16 21 C 0.13 5.15 2.95 44.67 0.13 5.28 16 22 H 0.03 1.55 6.37 -2.39 -0.02 1.53 16 23 C -0.08 -3.36 4.63 31.18 0.14 -3.22 16 24 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 25 H 0.06 3.56 5.78 -2.39 -0.01 3.55 16 26 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.00 0.10 7.89 -2.39 -0.02 0.08 16 28 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 29 H 0.03 0.87 8.13 -2.39 -0.02 0.85 16 30 H 0.08 2.11 8.14 -2.38 -0.02 2.09 16 31 H 0.10 1.66 7.45 -2.39 -0.02 1.64 16 32 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.08 2.22 6.38 -2.39 -0.02 2.21 16 34 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 35 H 0.05 2.05 7.37 -2.39 -0.02 2.03 16 36 H 0.04 1.74 8.14 -2.38 -0.02 1.72 16 Total: -1.00 -61.66 266.68 2.96 -58.70 By element: Atomic # 1 Polarization: 4.58 SS G_CDS: 1.04 Total: 5.62 kcal Atomic # 6 Polarization: -31.09 SS G_CDS: 2.31 Total: -28.79 kcal Atomic # 7 Polarization: -79.93 SS G_CDS: -2.41 Total: -82.34 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -61.66 2.96 -58.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709933331.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.431 kcal (2) G-P(sol) polarization free energy of solvation -61.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds