Wall clock time and date at job start Mon Mar 30 2020 03:44:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32872 * 1 3 3 C 1.47116 * 120.00358 * 2 1 4 4 C 1.32876 * 119.99712 * 185.31778 * 3 2 1 5 5 C 1.50687 * 120.00163 * 6.24307 * 4 3 2 6 6 C 1.53004 * 109.47286 * 126.12420 * 5 4 3 7 7 N 1.46902 * 109.47365 * 179.97438 * 6 5 4 8 8 C 1.47447 * 111.00007 * 69.15541 * 7 6 5 9 9 C 1.54315 * 107.23315 * 123.25622 * 8 7 6 10 10 C 1.55435 * 103.04501 * 22.28479 * 9 8 7 11 11 H 1.08998 * 111.00027 * 82.38867 * 10 9 8 12 12 C 1.50706 * 111.10656 * 206.29428 * 10 9 8 13 13 H 1.07996 * 119.99919 * 112.17158 * 12 10 9 14 14 C 1.37873 * 119.99709 * 292.17573 * 12 10 9 15 15 N 1.31511 * 120.00326 * 359.97438 * 14 12 10 16 16 Si 1.86797 * 119.99928 * 180.02562 * 14 12 10 17 17 H 1.48506 * 109.47255 * 59.99184 * 16 14 12 18 18 H 1.48495 * 109.47483 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.47211 * 300.00007 * 16 14 12 20 20 C 1.47845 * 111.00028 * 189.99991 * 7 6 5 21 21 H 1.07991 * 120.00355 * 180.02562 * 1 2 3 22 22 H 1.08005 * 119.99655 * 359.97438 * 1 2 3 23 23 H 1.08005 * 119.99655 * 180.02562 * 2 1 3 24 24 H 1.08001 * 119.99891 * 5.32099 * 3 2 1 25 25 H 1.07997 * 119.99262 * 186.24032 * 4 3 2 26 26 H 1.08998 * 109.47626 * 6.12075 * 5 4 3 27 27 H 1.08998 * 109.47372 * 246.12023 * 5 4 3 28 28 H 1.08997 * 109.46875 * 59.99822 * 6 5 4 29 29 H 1.09000 * 109.46980 * 299.99733 * 6 5 4 30 30 H 1.08998 * 109.88710 * 242.66426 * 8 7 6 31 31 H 1.09003 * 109.88830 * 3.85521 * 8 7 6 32 32 H 1.08998 * 110.70391 * 140.66290 * 9 8 7 33 33 H 1.09001 * 110.70780 * 263.90333 * 9 8 7 34 34 H 0.97008 * 120.00494 * 180.02562 * 15 14 12 35 35 H 1.09005 * 110.37038 * 332.46195 * 20 7 6 36 36 H 1.08996 * 110.37440 * 94.69565 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0644 1.2740 0.0000 4 6 3.3889 1.2763 -0.1067 5 6 4.1259 -0.0116 -0.3685 6 6 5.0214 0.1541 -1.5981 7 7 5.7404 -1.1013 -1.8530 8 6 4.8171 -2.1552 -2.3121 9 6 5.3363 -2.6555 -3.6764 10 6 6.8385 -2.2573 -3.6476 11 1 7.4279 -2.9955 -3.1039 12 6 7.3751 -2.0622 -5.0423 13 1 7.6622 -1.0765 -5.3775 14 6 7.4994 -3.1421 -5.8903 15 7 7.1502 -4.3425 -5.4821 16 14 8.1652 -2.9005 -7.6188 17 1 9.5389 -2.3410 -7.5465 18 1 8.1999 -4.2074 -8.3232 19 1 7.2866 -1.9610 -8.3609 20 6 6.7876 -0.9130 -2.8796 21 1 -0.5400 -0.9352 0.0004 22 1 -0.5400 0.9354 0.0004 23 1 1.8687 -0.9354 -0.0004 24 1 1.5279 2.2073 0.0867 25 1 3.9370 2.2014 -0.0057 26 1 3.4075 -0.8116 -0.5474 27 1 4.7398 -0.2614 0.4968 28 1 5.7398 0.9540 -1.4191 29 1 4.4076 0.4039 -2.4635 30 1 4.8063 -2.9766 -1.5956 31 1 3.8133 -1.7455 -2.4249 32 1 5.2260 -3.7368 -3.7578 33 1 4.8199 -2.1517 -4.4936 34 1 7.2380 -5.1024 -6.0786 35 1 6.5162 -0.1007 -3.5539 36 1 7.7488 -0.7087 -2.4080 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000713645689.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:00 Heat of formation + Delta-G solvation = 27.299462 kcal Electronic energy + Delta-G solvation = -14685.353659 eV Core-core repulsion = 12362.735776 eV Total energy + Delta-G solvation = -2322.617883 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 221.148 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.28428 -36.31358 -33.47106 -32.15607 -30.23742 -28.20759 -27.43284 -24.31289 -22.56187 -21.76106 -19.69325 -19.55625 -18.21391 -16.47798 -15.79161 -15.26255 -14.76513 -14.51254 -14.04303 -13.45868 -12.88984 -12.44592 -12.38269 -12.35041 -11.96413 -11.63052 -11.26618 -11.00970 -10.90797 -10.72455 -10.69692 -10.52798 -10.27867 -10.09706 -9.62049 -9.21193 -8.86001 -8.38828 -8.32787 -7.59382 -6.02053 -4.05327 1.33822 3.06364 3.31745 3.36513 3.38901 4.41640 4.61823 4.82337 5.03137 5.25164 5.30989 5.33412 5.56845 5.61980 5.68635 5.82200 5.88540 5.99558 6.19720 6.26376 6.32479 6.40976 6.48916 6.54296 6.55342 6.65910 6.85460 6.90722 7.14299 7.17919 7.61417 7.70966 7.77922 7.89956 8.02514 8.43340 8.97112 9.58860 11.08011 Molecular weight = 221.15amu Principal moments of inertia in cm(-1) A = 0.047537 B = 0.005169 C = 0.004993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.872977 B = 5415.425214 C = 5606.977860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.125 4.125 3 C -0.152 4.152 4 C -0.126 4.126 5 C -0.098 4.098 6 C 0.059 3.941 7 N -0.536 5.536 8 C 0.039 3.961 9 C -0.122 4.122 10 C 0.049 3.951 11 H 0.041 0.959 12 C -0.516 4.516 13 H 0.055 0.945 14 C 0.065 3.935 15 N -0.889 5.889 16 Si 0.891 3.109 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.278 1.278 20 C 0.046 3.954 21 H 0.099 0.901 22 H 0.095 0.905 23 H 0.119 0.881 24 H 0.111 0.889 25 H 0.112 0.888 26 H 0.074 0.926 27 H 0.079 0.921 28 H 0.066 0.934 29 H 0.030 0.970 30 H 0.062 0.938 31 H 0.036 0.964 32 H 0.069 0.931 33 H 0.047 0.953 34 H 0.261 0.739 35 H 0.034 0.966 36 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.862 8.070 9.210 15.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.143 4.143 3 C -0.170 4.170 4 C -0.145 4.145 5 C -0.135 4.135 6 C -0.070 4.070 7 N -0.260 5.260 8 C -0.089 4.089 9 C -0.161 4.161 10 C 0.030 3.970 11 H 0.059 0.941 12 C -0.554 4.554 13 H 0.073 0.927 14 C -0.138 4.138 15 N -0.526 5.526 16 Si 0.719 3.281 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.203 1.203 20 C -0.081 4.081 21 H 0.117 0.883 22 H 0.113 0.887 23 H 0.136 0.864 24 H 0.129 0.871 25 H 0.130 0.870 26 H 0.092 0.908 27 H 0.097 0.903 28 H 0.085 0.915 29 H 0.048 0.952 30 H 0.080 0.920 31 H 0.055 0.945 32 H 0.088 0.912 33 H 0.065 0.935 34 H 0.070 0.930 35 H 0.053 0.947 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -8.641 7.728 9.620 15.064 hybrid contribution -0.127 0.406 -1.758 1.809 sum -8.768 8.133 7.861 14.312 Atomic orbital electron populations 1.24308 0.95684 1.01662 1.01170 1.22169 0.95372 0.97338 0.99378 1.21838 0.94723 0.96520 1.03960 1.23485 0.95013 0.99111 0.96868 1.20867 0.98497 0.95177 0.98994 1.22099 0.95788 0.93177 0.95900 1.63596 1.12511 1.05743 1.44129 1.22901 0.93728 0.94353 0.97907 1.22784 0.99328 1.01147 0.92816 1.19781 0.92075 0.90581 0.94533 0.94113 1.21010 1.42989 0.93975 0.97448 0.92684 1.24966 0.95206 0.95198 0.98381 1.69953 1.47694 0.98874 1.36125 0.86680 0.79588 0.77249 0.84603 1.20212 1.21283 1.20340 1.23166 0.93178 1.00451 0.91311 0.88301 0.88702 0.86371 0.87111 0.86987 0.90807 0.90299 0.91546 0.95188 0.92000 0.94548 0.91242 0.93458 0.92958 0.94740 0.92056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.89 14.43 28.88 0.42 -1.47 16 2 C -0.12 -1.41 9.21 -37.83 -0.35 -1.76 16 3 C -0.15 -1.70 9.83 -37.83 -0.37 -2.07 16 4 C -0.13 -1.46 9.59 -36.16 -0.35 -1.81 16 5 C -0.10 -1.32 5.46 -27.89 -0.15 -1.47 16 6 C 0.06 0.94 4.51 -3.82 -0.02 0.93 16 7 N -0.54 -10.31 5.16 -231.25 -1.19 -11.51 16 8 C 0.04 0.76 6.20 -2.84 -0.02 0.74 16 9 C -0.12 -2.88 5.92 -24.75 -0.15 -3.02 16 10 C 0.05 1.26 2.85 -89.47 -0.26 1.00 16 11 H 0.04 1.13 8.14 -51.93 -0.42 0.71 16 12 C -0.52 -14.26 8.50 -34.44 -0.29 -14.56 16 13 H 0.05 1.50 7.77 -52.49 -0.41 1.09 16 14 C 0.06 1.80 5.38 -17.82 -0.10 1.70 16 15 N -0.89 -25.68 12.63 55.43 0.70 -24.98 16 16 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 17 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 18 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 20 C 0.05 0.99 6.12 -2.30 -0.01 0.98 16 21 H 0.10 0.86 8.06 -52.49 -0.42 0.44 16 22 H 0.09 0.83 8.05 -52.48 -0.42 0.40 16 23 H 0.12 1.37 5.99 -52.48 -0.31 1.05 16 24 H 0.11 1.06 8.06 -52.49 -0.42 0.64 16 25 H 0.11 1.13 8.06 -52.49 -0.42 0.71 16 26 H 0.07 1.01 4.36 -51.93 -0.23 0.79 16 27 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 28 H 0.07 1.00 8.08 -51.93 -0.42 0.58 16 29 H 0.03 0.50 7.98 -51.93 -0.41 0.09 16 30 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.04 0.66 6.88 -51.93 -0.36 0.30 16 32 H 0.07 1.75 7.85 -51.93 -0.41 1.34 16 33 H 0.05 1.15 8.04 -51.93 -0.42 0.73 16 34 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 35 H 0.03 0.75 7.68 -51.93 -0.40 0.35 16 36 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 LS Contribution 294.38 15.07 4.44 4.44 Total: -1.00 -28.35 294.38 -8.60 -36.95 By element: Atomic # 1 Polarization: 5.48 SS G_CDS: -5.88 Total: -0.40 kcal Atomic # 6 Polarization: -19.16 SS G_CDS: -1.64 Total: -20.80 kcal Atomic # 7 Polarization: -36.00 SS G_CDS: -0.49 Total: -36.49 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -28.35 -8.60 -36.95 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713645689.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.249 kcal (2) G-P(sol) polarization free energy of solvation -28.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.950 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds