Wall clock time and date at job start Mon Mar 30 2020 03:44:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32872 * 1 3 3 C 1.47116 * 120.00358 * 2 1 4 4 C 1.32876 * 119.99712 * 185.31778 * 3 2 1 5 5 C 1.50687 * 120.00163 * 6.24307 * 4 3 2 6 6 C 1.53004 * 109.47286 * 126.12420 * 5 4 3 7 7 N 1.46902 * 109.47365 * 179.97438 * 6 5 4 8 8 C 1.47447 * 111.00007 * 69.15541 * 7 6 5 9 9 C 1.54315 * 107.23315 * 123.25622 * 8 7 6 10 10 C 1.55435 * 103.04501 * 22.28479 * 9 8 7 11 11 H 1.08998 * 111.00027 * 82.38867 * 10 9 8 12 12 C 1.50706 * 111.10656 * 206.29428 * 10 9 8 13 13 H 1.07996 * 119.99919 * 112.17158 * 12 10 9 14 14 C 1.37873 * 119.99709 * 292.17573 * 12 10 9 15 15 N 1.31511 * 120.00326 * 359.97438 * 14 12 10 16 16 Si 1.86797 * 119.99928 * 180.02562 * 14 12 10 17 17 H 1.48506 * 109.47255 * 59.99184 * 16 14 12 18 18 H 1.48495 * 109.47483 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.47211 * 300.00007 * 16 14 12 20 20 C 1.47845 * 111.00028 * 189.99991 * 7 6 5 21 21 H 1.07991 * 120.00355 * 180.02562 * 1 2 3 22 22 H 1.08005 * 119.99655 * 359.97438 * 1 2 3 23 23 H 1.08005 * 119.99655 * 180.02562 * 2 1 3 24 24 H 1.08001 * 119.99891 * 5.32099 * 3 2 1 25 25 H 1.07997 * 119.99262 * 186.24032 * 4 3 2 26 26 H 1.08998 * 109.47626 * 6.12075 * 5 4 3 27 27 H 1.08998 * 109.47372 * 246.12023 * 5 4 3 28 28 H 1.08997 * 109.46875 * 59.99822 * 6 5 4 29 29 H 1.09000 * 109.46980 * 299.99733 * 6 5 4 30 30 H 1.08998 * 109.88710 * 242.66426 * 8 7 6 31 31 H 1.09003 * 109.88830 * 3.85521 * 8 7 6 32 32 H 1.08998 * 110.70391 * 140.66290 * 9 8 7 33 33 H 1.09001 * 110.70780 * 263.90333 * 9 8 7 34 34 H 0.97008 * 120.00494 * 180.02562 * 15 14 12 35 35 H 1.09005 * 110.37038 * 332.46195 * 20 7 6 36 36 H 1.08996 * 110.37440 * 94.69565 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0644 1.2740 0.0000 4 6 3.3889 1.2763 -0.1067 5 6 4.1259 -0.0116 -0.3685 6 6 5.0214 0.1541 -1.5981 7 7 5.7404 -1.1013 -1.8530 8 6 4.8171 -2.1552 -2.3121 9 6 5.3363 -2.6555 -3.6764 10 6 6.8385 -2.2573 -3.6476 11 1 7.4279 -2.9955 -3.1039 12 6 7.3751 -2.0622 -5.0423 13 1 7.6622 -1.0765 -5.3775 14 6 7.4994 -3.1421 -5.8903 15 7 7.1502 -4.3425 -5.4821 16 14 8.1652 -2.9005 -7.6188 17 1 9.5389 -2.3410 -7.5465 18 1 8.1999 -4.2074 -8.3232 19 1 7.2866 -1.9610 -8.3609 20 6 6.7876 -0.9130 -2.8796 21 1 -0.5400 -0.9352 0.0004 22 1 -0.5400 0.9354 0.0004 23 1 1.8687 -0.9354 -0.0004 24 1 1.5279 2.2073 0.0867 25 1 3.9370 2.2014 -0.0057 26 1 3.4075 -0.8116 -0.5474 27 1 4.7398 -0.2614 0.4968 28 1 5.7398 0.9540 -1.4191 29 1 4.4076 0.4039 -2.4635 30 1 4.8063 -2.9766 -1.5956 31 1 3.8133 -1.7455 -2.4249 32 1 5.2260 -3.7368 -3.7578 33 1 4.8199 -2.1517 -4.4936 34 1 7.2380 -5.1024 -6.0786 35 1 6.5162 -0.1007 -3.5539 36 1 7.7488 -0.7087 -2.4080 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000713645689.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:00 Heat of formation + Delta-G solvation = 11.377666 kcal Electronic energy + Delta-G solvation = -14686.044080 eV Core-core repulsion = 12362.735776 eV Total energy + Delta-G solvation = -2323.308304 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 221.148 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.87791 -37.33998 -35.20072 -33.58990 -31.63743 -30.00945 -28.77661 -26.23609 -23.93450 -22.61243 -21.50831 -21.23473 -19.12601 -18.48828 -17.01171 -16.81823 -16.33367 -16.00781 -15.32268 -14.78787 -14.42394 -14.19259 -14.01685 -13.27821 -13.17758 -13.00595 -12.94212 -12.83812 -12.69315 -12.33127 -12.03406 -11.85409 -11.60021 -11.53422 -11.30254 -11.11589 -10.92590 -10.50330 -9.21384 -9.13304 -8.15224 -6.25953 0.51603 1.41272 1.42724 1.50518 2.22816 2.41764 3.15138 3.21146 3.87903 4.06395 4.15083 4.23678 4.31039 4.37400 4.46440 4.52540 4.69807 4.70352 4.76134 4.84512 4.92103 5.01670 5.05715 5.20084 5.24742 5.31534 5.53783 5.56392 5.65745 5.76677 5.82685 5.89221 6.05108 6.07093 6.33910 6.35845 6.83659 7.42045 8.94437 Molecular weight = 221.15amu Principal moments of inertia in cm(-1) A = 0.047537 B = 0.005169 C = 0.004993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.872977 B = 5415.425214 C = 5606.977860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.154 4.154 3 C -0.146 4.146 4 C -0.140 4.140 5 C -0.089 4.089 6 C 0.059 3.941 7 N -0.537 5.537 8 C 0.051 3.949 9 C -0.115 4.115 10 C 0.038 3.962 11 H 0.007 0.993 12 C -0.536 4.536 13 H 0.055 0.945 14 C 0.014 3.986 15 N -0.919 5.919 16 Si 0.957 3.043 17 H -0.269 1.269 18 H -0.284 1.284 19 H -0.271 1.271 20 C 0.058 3.942 21 H 0.108 0.892 22 H 0.109 0.891 23 H 0.110 0.890 24 H 0.129 0.871 25 H 0.128 0.872 26 H 0.069 0.931 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.024 0.976 30 H 0.069 0.931 31 H 0.056 0.944 32 H 0.045 0.955 33 H 0.034 0.966 34 H 0.262 0.738 35 H 0.034 0.966 36 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.806 9.558 9.458 16.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.172 4.172 3 C -0.164 4.164 4 C -0.158 4.158 5 C -0.126 4.126 6 C -0.069 4.069 7 N -0.261 5.261 8 C -0.077 4.077 9 C -0.154 4.154 10 C 0.019 3.981 11 H 0.025 0.975 12 C -0.574 4.574 13 H 0.073 0.927 14 C -0.185 4.185 15 N -0.558 5.558 16 Si 0.782 3.218 17 H -0.194 1.194 18 H -0.209 1.209 19 H -0.196 1.196 20 C -0.069 4.069 21 H 0.127 0.873 22 H 0.127 0.873 23 H 0.128 0.872 24 H 0.146 0.854 25 H 0.146 0.854 26 H 0.087 0.913 27 H 0.096 0.904 28 H 0.096 0.904 29 H 0.042 0.958 30 H 0.087 0.913 31 H 0.074 0.926 32 H 0.064 0.936 33 H 0.052 0.948 34 H 0.070 0.930 35 H 0.052 0.948 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -9.590 9.231 9.880 16.577 hybrid contribution 0.094 -0.072 -1.797 1.801 sum -9.495 9.159 8.084 15.472 Atomic orbital electron populations 1.24559 0.95312 1.02861 0.98594 1.22258 0.96097 0.97311 1.01510 1.22062 0.94702 0.97133 1.02538 1.23445 0.95230 0.98715 0.98414 1.20733 0.97972 0.96331 0.97592 1.22202 0.96138 0.91719 0.96839 1.63605 1.12506 1.07315 1.42693 1.22776 0.94531 0.94850 0.95518 1.22593 0.98405 0.99514 0.94858 1.19739 0.92482 0.91936 0.93924 0.97493 1.21372 1.43220 0.94124 0.98679 0.92658 1.25777 0.95442 0.94869 1.02400 1.70083 1.48631 0.99594 1.37507 0.85633 0.79168 0.77317 0.79683 1.19409 1.20909 1.19616 1.22941 0.94468 0.98050 0.91469 0.87343 0.87322 0.87177 0.85352 0.85444 0.91262 0.90369 0.90351 0.95815 0.91302 0.92582 0.93633 0.94755 0.92951 0.94791 0.91522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.03 14.43 66.64 0.96 -2.07 16 2 C -0.15 -3.18 9.21 23.43 0.22 -2.97 16 3 C -0.15 -2.91 9.83 23.43 0.23 -2.68 16 4 C -0.14 -2.92 9.59 24.51 0.24 -2.68 16 5 C -0.09 -2.23 5.46 29.85 0.16 -2.07 16 6 C 0.06 1.79 4.51 86.30 0.39 2.18 16 7 N -0.54 -20.18 5.16 -885.53 -4.57 -24.76 16 8 C 0.05 1.98 6.20 86.64 0.54 2.51 16 9 C -0.11 -5.53 5.92 31.88 0.19 -5.34 16 10 C 0.04 1.99 2.85 -10.05 -0.03 1.97 16 11 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 12 C -0.54 -30.05 8.50 25.60 0.22 -29.83 16 13 H 0.06 3.02 7.77 -2.91 -0.02 3.00 16 14 C 0.01 0.80 5.38 84.65 0.46 1.26 16 15 N -0.92 -54.26 12.63 21.45 0.27 -53.99 16 16 Si 0.96 43.87 29.54 68.60 2.03 45.90 16 17 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 18 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 19 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 20 C 0.06 2.50 6.12 86.77 0.53 3.03 16 21 H 0.11 1.62 8.06 -2.91 -0.02 1.60 16 22 H 0.11 1.55 8.05 -2.91 -0.02 1.53 16 23 H 0.11 2.41 5.99 -2.91 -0.02 2.40 16 24 H 0.13 2.07 8.06 -2.91 -0.02 2.04 16 25 H 0.13 2.24 8.06 -2.91 -0.02 2.21 16 26 H 0.07 1.80 4.36 -2.39 -0.01 1.79 16 27 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 28 H 0.08 2.19 8.08 -2.39 -0.02 2.17 16 29 H 0.02 0.75 7.98 -2.39 -0.02 0.74 16 30 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 31 H 0.06 1.95 6.88 -2.39 -0.02 1.94 16 32 H 0.04 2.37 7.85 -2.39 -0.02 2.35 16 33 H 0.03 1.69 8.04 -2.39 -0.02 1.68 16 34 H 0.26 14.68 8.31 -92.70 -0.77 13.91 16 35 H 0.03 1.45 7.68 -2.38 -0.02 1.43 16 36 H 0.07 2.77 8.14 -2.39 -0.02 2.75 16 Total: -1.00 -60.61 294.38 2.84 -57.78 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: 1.02 Total: 11.78 kcal Atomic # 6 Polarization: -40.80 SS G_CDS: 4.10 Total: -36.70 kcal Atomic # 7 Polarization: -74.45 SS G_CDS: -4.30 Total: -78.75 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Total: -60.61 2.84 -57.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713645689.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.153 kcal (2) G-P(sol) polarization free energy of solvation -60.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.776 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds