Wall clock time and date at job start Mon Mar 30 2020 03:10:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 120.00045 * 2 1 4 4 H 1.48495 * 109.47528 * 180.02562 * 3 2 1 5 5 H 1.48510 * 109.46998 * 299.99971 * 3 2 1 6 6 H 1.48501 * 109.47286 * 59.99625 * 3 2 1 7 7 C 1.37878 * 120.00138 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00007 * 186.40687 * 7 2 1 9 9 C 1.50698 * 120.00016 * 6.40046 * 7 2 1 10 10 C 1.53000 * 115.55391 * 274.71004 * 9 7 2 11 11 N 1.46900 * 109.47247 * 294.88911 * 10 9 7 12 12 C 1.46900 * 111.00149 * 185.18044 * 11 10 9 13 13 H 1.08997 * 115.55057 * 9.27889 * 12 11 10 14 14 C 1.52999 * 117.49801 * 223.60878 * 12 11 10 15 15 C 1.52998 * 60.00021 * 252.51245 * 14 12 11 16 16 H 1.09000 * 117.50275 * 107.49192 * 15 14 12 17 17 C 1.53001 * 117.49892 * 252.51650 * 15 14 12 18 18 C 1.53003 * 117.49719 * 197.37077 * 17 15 14 19 19 C 1.53005 * 117.50135 * 128.70938 * 17 15 14 20 20 C 1.53003 * 117.49751 * 129.04204 * 9 7 2 21 21 C 1.52999 * 117.49886 * 60.37912 * 9 7 2 22 22 H 0.96999 * 120.00254 * 354.92340 * 1 2 3 23 23 H 1.09000 * 109.46713 * 54.88862 * 10 9 7 24 24 H 1.08993 * 109.47273 * 174.88665 * 10 9 7 25 25 H 1.00905 * 110.99740 * 61.22634 * 11 10 9 26 26 H 1.08992 * 117.50442 * 0.02562 * 14 12 11 27 27 H 1.09005 * 117.49857 * 145.00040 * 14 12 11 28 28 H 1.08998 * 115.55003 * 343.03370 * 17 15 14 29 29 H 1.09000 * 117.49880 * 359.97438 * 18 17 15 30 30 H 1.09001 * 117.49903 * 145.02061 * 18 17 15 31 31 H 1.08997 * 117.49510 * 214.97394 * 19 17 15 32 32 H 1.08995 * 117.49597 * 359.97438 * 19 17 15 33 33 H 1.08994 * 117.49835 * 359.97438 * 20 9 7 34 34 H 1.08999 * 117.50268 * 145.02729 * 20 9 7 35 35 H 1.09000 * 117.50356 * 214.97926 * 21 9 7 36 36 H 1.09001 * 117.49560 * 359.97438 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0794 -1.1970 0.1038 9 6 1.2581 -2.4950 -0.1466 10 6 0.7006 -3.0852 1.1502 11 7 1.8116 -3.4577 2.0361 12 6 1.3189 -4.1406 3.2398 13 1 0.2624 -4.4084 3.2292 14 6 1.9318 -3.7363 4.5821 15 6 2.2814 -5.0887 3.9579 16 1 3.2801 -5.2058 3.5372 17 6 1.6872 -6.3408 4.6061 18 6 2.3319 -7.6860 4.2662 19 6 0.9572 -7.3296 3.6948 20 6 1.7480 -3.4744 -1.2151 21 6 0.4430 -2.7022 -1.4247 22 1 -0.4850 0.8367 0.0743 23 1 0.0730 -2.3446 1.6460 24 1 0.1065 -3.9698 0.9209 25 1 2.3660 -2.6505 2.2797 26 1 2.7002 -2.9634 4.5723 27 1 1.2785 -3.7382 5.4547 28 1 1.3013 -6.2088 5.6169 29 1 3.1791 -7.6791 3.5804 30 1 2.3698 -8.4392 5.0532 31 1 0.0914 -7.8483 4.1063 32 1 0.9000 -7.0878 2.6335 33 1 2.6099 -3.1776 -1.8127 34 1 1.6727 -4.5392 -0.9945 35 1 -0.4902 -3.2592 -1.3418 36 1 0.4463 -1.8972 -2.1597 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000716551980.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:07 Heat of formation + Delta-G solvation = 66.949339 kcal Electronic energy + Delta-G solvation = -14865.956100 eV Core-core repulsion = 12545.057565 eV Total energy + Delta-G solvation = -2320.898535 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 221.148 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.50998 -36.75975 -35.29996 -31.96490 -31.57640 -25.69833 -24.43043 -23.21977 -22.36012 -21.11140 -20.76881 -19.66633 -18.88786 -16.03039 -15.51657 -15.21186 -14.66439 -14.61076 -13.78948 -13.59134 -12.84319 -12.56546 -12.10015 -11.65537 -11.50388 -11.32487 -11.14461 -10.97523 -10.91727 -10.67516 -10.59687 -10.41506 -10.11421 -9.81354 -9.64641 -9.22481 -8.73484 -8.39866 -8.03390 -7.33331 -6.01813 -4.08095 3.27232 3.36454 3.40501 3.76667 4.24537 4.40404 4.60943 4.95513 5.01710 5.12073 5.27126 5.40832 5.41839 5.56601 5.63472 5.69682 5.78702 5.96861 6.03199 6.19010 6.20164 6.22971 6.35036 6.51121 6.54028 6.60142 6.86545 6.88917 6.96216 7.19874 7.54377 7.58727 7.89033 8.02464 8.27836 8.51320 8.95644 9.57781 11.06179 Molecular weight = 221.15amu Principal moments of inertia in cm(-1) A = 0.034851 B = 0.006649 C = 0.006013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.229824 B = 4209.932612 C = 4655.438229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.070 3.930 3 Si 0.887 3.113 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.493 4.493 8 H 0.060 0.940 9 C 0.048 3.952 10 C 0.108 3.892 11 N -0.650 5.650 12 C 0.044 3.956 13 H 0.100 0.900 14 C -0.205 4.205 15 C -0.123 4.123 16 H 0.105 0.895 17 C -0.119 4.119 18 C -0.179 4.179 19 C -0.178 4.178 20 C -0.200 4.200 21 C -0.161 4.161 22 H 0.259 0.741 23 H 0.037 0.963 24 H 0.038 0.962 25 H 0.349 0.651 26 H 0.094 0.906 27 H 0.087 0.913 28 H 0.100 0.900 29 H 0.094 0.906 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.098 0.902 33 H 0.072 0.928 34 H 0.065 0.935 35 H 0.060 0.940 36 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.589 -9.555 7.590 12.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.133 4.133 3 Si 0.715 3.285 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.212 1.212 7 C -0.531 4.531 8 H 0.078 0.922 9 C 0.048 3.952 10 C -0.020 4.020 11 N -0.280 5.280 12 C -0.067 4.067 13 H 0.118 0.882 14 C -0.244 4.244 15 C -0.143 4.143 16 H 0.123 0.877 17 C -0.137 4.137 18 C -0.216 4.216 19 C -0.215 4.215 20 C -0.238 4.238 21 C -0.199 4.199 22 H 0.068 0.932 23 H 0.055 0.945 24 H 0.056 0.944 25 H 0.170 0.830 26 H 0.112 0.888 27 H 0.106 0.894 28 H 0.118 0.882 29 H 0.112 0.888 30 H 0.107 0.893 31 H 0.107 0.893 32 H 0.116 0.884 33 H 0.091 0.909 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 1.556 -9.980 7.151 12.375 hybrid contribution -0.025 1.680 0.531 1.762 sum 1.531 -8.300 7.681 11.412 Atomic orbital electron populations 1.70000 1.05873 1.26496 1.49339 1.25005 0.94774 0.98831 0.94679 0.86623 0.80352 0.84006 0.77553 1.19673 1.21016 1.21159 1.20508 0.93048 0.88816 1.50732 0.92161 1.18751 0.97490 0.93376 0.85633 1.21473 0.90703 0.96028 0.93841 1.60157 1.23126 1.31810 1.12907 1.22521 0.95948 1.00463 0.87805 0.88200 1.23515 1.04407 0.98228 0.98202 1.21999 1.00367 0.88664 1.03253 0.87663 1.21724 1.03678 0.89525 0.98769 1.22958 0.96922 0.98219 1.03505 1.22969 0.95072 1.03265 1.00168 1.22876 0.97749 0.95862 1.07297 1.22530 0.92333 1.01315 1.03765 0.93159 0.94490 0.94359 0.82996 0.88805 0.89426 0.88241 0.88773 0.89308 0.89327 0.88356 0.90915 0.91684 0.92183 0.90299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.75 12.92 55.43 0.72 -24.03 16 2 C 0.07 1.89 5.39 -17.82 -0.10 1.80 16 3 Si 0.89 20.93 29.55 -169.99 -5.02 15.90 16 4 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 5 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.49 -13.22 8.32 -34.44 -0.29 -13.51 16 8 H 0.06 1.63 7.82 -52.49 -0.41 1.22 16 9 C 0.05 1.19 1.57 -155.66 -0.24 0.94 16 10 C 0.11 2.43 5.40 -3.82 -0.02 2.41 16 11 N -0.65 -12.93 6.75 -106.73 -0.72 -13.65 16 12 C 0.04 0.74 5.95 -67.71 -0.40 0.34 16 13 H 0.10 1.67 7.90 -51.93 -0.41 1.26 16 14 C -0.20 -2.96 9.95 -26.73 -0.27 -3.22 16 15 C -0.12 -1.77 5.80 -90.62 -0.53 -2.30 16 16 H 0.11 1.60 8.14 -51.93 -0.42 1.17 16 17 C -0.12 -1.46 5.87 -90.61 -0.53 -1.99 16 18 C -0.18 -1.98 10.25 -26.69 -0.27 -2.26 16 19 C -0.18 -2.11 10.18 -26.69 -0.27 -2.38 16 20 C -0.20 -4.54 9.96 -26.69 -0.27 -4.81 16 21 C -0.16 -3.87 9.42 -26.69 -0.25 -4.13 16 22 H 0.26 6.97 8.32 -40.82 -0.34 6.63 16 23 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 24 H 0.04 0.82 8.08 -51.93 -0.42 0.40 16 25 H 0.35 7.26 8.08 -39.29 -0.32 6.94 16 26 H 0.09 1.36 8.09 -51.93 -0.42 0.94 16 27 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 28 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 33 H 0.07 1.64 8.14 -51.93 -0.42 1.22 16 34 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 35 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 36 H 0.08 2.01 8.14 -51.93 -0.42 1.59 16 LS Contribution 304.57 15.07 4.59 4.59 Total: -1.00 -27.19 304.57 -10.06 -37.25 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: -6.19 Total: 9.04 kcal Atomic # 6 Polarization: -25.67 SS G_CDS: -3.44 Total: -29.10 kcal Atomic # 7 Polarization: -37.68 SS G_CDS: 0.00 Total: -37.68 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -27.19 -10.06 -37.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716551980.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.198 kcal (2) G-P(sol) polarization free energy of solvation -27.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.249 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds