Wall clock time and date at job start Mon Mar 30 2020 03:10:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 120.00045 * 2 1 4 4 H 1.48495 * 109.47528 * 180.02562 * 3 2 1 5 5 H 1.48510 * 109.46998 * 299.99971 * 3 2 1 6 6 H 1.48501 * 109.47286 * 59.99625 * 3 2 1 7 7 C 1.37878 * 120.00138 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00007 * 186.40687 * 7 2 1 9 9 C 1.50698 * 120.00016 * 6.40046 * 7 2 1 10 10 C 1.53000 * 115.55391 * 274.71004 * 9 7 2 11 11 N 1.46900 * 109.47247 * 294.88911 * 10 9 7 12 12 C 1.46900 * 111.00149 * 185.18044 * 11 10 9 13 13 H 1.08997 * 115.55057 * 9.27889 * 12 11 10 14 14 C 1.52999 * 117.49801 * 223.60878 * 12 11 10 15 15 C 1.52998 * 60.00021 * 252.51245 * 14 12 11 16 16 H 1.09000 * 117.50275 * 107.49192 * 15 14 12 17 17 C 1.53001 * 117.49892 * 252.51650 * 15 14 12 18 18 C 1.53003 * 117.49719 * 197.37077 * 17 15 14 19 19 C 1.53005 * 117.50135 * 128.70938 * 17 15 14 20 20 C 1.53003 * 117.49751 * 129.04204 * 9 7 2 21 21 C 1.52999 * 117.49886 * 60.37912 * 9 7 2 22 22 H 0.96999 * 120.00254 * 354.92340 * 1 2 3 23 23 H 1.09000 * 109.46713 * 54.88862 * 10 9 7 24 24 H 1.08993 * 109.47273 * 174.88665 * 10 9 7 25 25 H 1.00905 * 110.99740 * 61.22634 * 11 10 9 26 26 H 1.08992 * 117.50442 * 0.02562 * 14 12 11 27 27 H 1.09005 * 117.49857 * 145.00040 * 14 12 11 28 28 H 1.08998 * 115.55003 * 343.03370 * 17 15 14 29 29 H 1.09000 * 117.49880 * 359.97438 * 18 17 15 30 30 H 1.09001 * 117.49903 * 145.02061 * 18 17 15 31 31 H 1.08997 * 117.49510 * 214.97394 * 19 17 15 32 32 H 1.08995 * 117.49597 * 359.97438 * 19 17 15 33 33 H 1.08994 * 117.49835 * 359.97438 * 20 9 7 34 34 H 1.08999 * 117.50268 * 145.02729 * 20 9 7 35 35 H 1.09000 * 117.50356 * 214.97926 * 21 9 7 36 36 H 1.09001 * 117.49560 * 359.97438 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0794 -1.1970 0.1038 9 6 1.2581 -2.4950 -0.1466 10 6 0.7006 -3.0852 1.1502 11 7 1.8116 -3.4577 2.0361 12 6 1.3189 -4.1406 3.2398 13 1 0.2624 -4.4084 3.2292 14 6 1.9318 -3.7363 4.5821 15 6 2.2814 -5.0887 3.9579 16 1 3.2801 -5.2058 3.5372 17 6 1.6872 -6.3408 4.6061 18 6 2.3319 -7.6860 4.2662 19 6 0.9572 -7.3296 3.6948 20 6 1.7480 -3.4744 -1.2151 21 6 0.4430 -2.7022 -1.4247 22 1 -0.4850 0.8367 0.0743 23 1 0.0730 -2.3446 1.6460 24 1 0.1065 -3.9698 0.9209 25 1 2.3660 -2.6505 2.2797 26 1 2.7002 -2.9634 4.5723 27 1 1.2785 -3.7382 5.4547 28 1 1.3013 -6.2088 5.6169 29 1 3.1791 -7.6791 3.5804 30 1 2.3698 -8.4392 5.0532 31 1 0.0914 -7.8483 4.1063 32 1 0.9000 -7.0878 2.6335 33 1 2.6099 -3.1776 -1.8127 34 1 1.6727 -4.5392 -0.9945 35 1 -0.4902 -3.2592 -1.3418 36 1 0.4463 -1.8972 -2.1597 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000716551980.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:07 Heat of formation + Delta-G solvation = 52.967403 kcal Electronic energy + Delta-G solvation = -14866.562403 eV Core-core repulsion = 12545.057565 eV Total energy + Delta-G solvation = -2321.504838 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 221.148 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.72305 -38.47950 -36.53452 -34.00150 -33.13019 -27.71139 -26.12059 -24.37631 -23.28231 -22.88017 -22.16078 -21.11239 -20.49394 -17.94615 -16.69035 -16.60277 -16.49801 -16.01639 -15.66095 -14.90940 -14.49036 -14.06877 -13.55479 -13.30630 -13.03194 -12.91806 -12.85446 -12.44798 -12.28326 -12.22653 -12.01271 -11.89667 -11.66726 -11.32967 -10.93075 -10.72503 -10.60556 -10.33663 -9.92822 -8.88984 -8.08801 -6.20355 1.39275 1.43437 1.53537 2.42869 2.70349 3.13037 3.19587 3.26644 3.67321 3.85743 4.02490 4.13152 4.23950 4.28590 4.36998 4.50359 4.61428 4.67998 4.72497 4.80204 4.84486 4.92720 5.00984 5.05359 5.07746 5.15317 5.28235 5.32169 5.33808 5.43377 5.66084 5.67912 5.79681 6.38755 6.48182 6.62486 6.88810 7.48025 8.98914 Molecular weight = 221.15amu Principal moments of inertia in cm(-1) A = 0.034851 B = 0.006649 C = 0.006013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.229824 B = 4209.932612 C = 4655.438229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.026 3.974 3 Si 0.948 3.052 4 H -0.268 1.268 5 H -0.285 1.285 6 H -0.281 1.281 7 C -0.503 4.503 8 H 0.052 0.948 9 C 0.024 3.976 10 C 0.125 3.875 11 N -0.650 5.650 12 C 0.017 3.983 13 H 0.097 0.903 14 C -0.192 4.192 15 C -0.106 4.106 16 H 0.097 0.903 17 C -0.128 4.128 18 C -0.168 4.168 19 C -0.182 4.182 20 C -0.179 4.179 21 C -0.167 4.167 22 H 0.259 0.741 23 H 0.005 0.995 24 H 0.045 0.955 25 H 0.341 0.659 26 H 0.092 0.908 27 H 0.106 0.894 28 H 0.115 0.885 29 H 0.089 0.911 30 H 0.111 0.889 31 H 0.105 0.895 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.084 0.916 35 H 0.071 0.929 36 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.245 -10.531 8.750 13.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.174 4.174 3 Si 0.774 3.226 4 H -0.192 1.192 5 H -0.211 1.211 6 H -0.207 1.207 7 C -0.541 4.541 8 H 0.070 0.930 9 C 0.023 3.977 10 C -0.004 4.004 11 N -0.279 5.279 12 C -0.094 4.094 13 H 0.115 0.885 14 C -0.231 4.231 15 C -0.126 4.126 16 H 0.115 0.885 17 C -0.146 4.146 18 C -0.205 4.205 19 C -0.219 4.219 20 C -0.216 4.216 21 C -0.205 4.205 22 H 0.068 0.932 23 H 0.024 0.976 24 H 0.063 0.937 25 H 0.160 0.840 26 H 0.110 0.890 27 H 0.124 0.876 28 H 0.133 0.867 29 H 0.108 0.892 30 H 0.129 0.871 31 H 0.123 0.877 32 H 0.098 0.902 33 H 0.091 0.909 34 H 0.102 0.898 35 H 0.089 0.911 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.223 -10.975 8.318 13.950 hybrid contribution -0.219 1.939 0.174 1.959 sum 2.004 -9.037 8.492 12.562 Atomic orbital electron populations 1.70103 1.07092 1.27148 1.50336 1.25656 0.95480 1.01771 0.94503 0.85668 0.79288 0.80238 0.77413 1.19184 1.21066 1.20703 1.20706 0.92815 0.90124 1.50447 0.92973 1.18923 0.98271 0.93657 0.86833 1.21162 0.90916 0.95117 0.93196 1.60167 1.22158 1.31170 1.14451 1.22564 0.96471 1.02465 0.87873 0.88480 1.23562 1.03972 0.98276 0.97277 1.21976 0.99169 0.89597 1.01820 0.88510 1.21764 1.04521 0.88976 0.99349 1.23043 0.96139 0.97671 1.03612 1.22981 0.96375 1.03399 0.99139 1.22844 0.96756 0.96444 1.05568 1.22455 0.93563 1.01308 1.03148 0.93218 0.97633 0.93668 0.83981 0.88979 0.87554 0.86718 0.89225 0.87096 0.87669 0.90204 0.90942 0.89777 0.91084 0.92453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.79 12.92 21.45 0.28 -51.52 16 2 C 0.03 1.41 5.39 84.66 0.46 1.87 16 3 Si 0.95 43.18 29.55 68.60 2.03 45.21 16 4 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 5 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 6 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 7 C -0.50 -27.18 8.32 25.60 0.21 -26.97 16 8 H 0.05 2.84 7.82 -2.91 -0.02 2.82 16 9 C 0.02 1.18 1.57 -52.93 -0.08 1.10 16 10 C 0.13 5.70 5.40 86.30 0.47 6.16 16 11 N -0.65 -25.87 6.75 -491.58 -3.32 -29.19 16 12 C 0.02 0.56 5.95 44.91 0.27 0.83 16 13 H 0.10 3.21 7.90 -2.39 -0.02 3.20 16 14 C -0.19 -5.25 9.95 30.59 0.30 -4.95 16 15 C -0.11 -2.88 5.80 -10.79 -0.06 -2.95 16 16 H 0.10 2.81 8.14 -2.39 -0.02 2.79 16 17 C -0.13 -2.83 5.87 -10.79 -0.06 -2.90 16 18 C -0.17 -3.26 10.25 30.62 0.31 -2.95 16 19 C -0.18 -3.94 10.18 30.62 0.31 -3.63 16 20 C -0.18 -7.97 9.96 30.62 0.30 -7.66 16 21 C -0.17 -8.03 9.42 30.62 0.29 -7.74 16 22 H 0.26 14.10 8.32 -92.71 -0.77 13.33 16 23 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 24 H 0.04 1.95 8.08 -2.39 -0.02 1.93 16 25 H 0.34 14.29 8.08 -89.69 -0.72 13.57 16 26 H 0.09 2.56 8.09 -2.39 -0.02 2.54 16 27 H 0.11 2.51 8.14 -2.38 -0.02 2.49 16 28 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 29 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 33 H 0.07 3.21 8.14 -2.39 -0.02 3.19 16 34 H 0.08 3.41 8.14 -2.39 -0.02 3.39 16 35 H 0.07 3.21 8.14 -2.39 -0.02 3.19 16 36 H 0.06 2.98 8.14 -2.39 -0.02 2.96 16 Total: -1.00 -57.25 304.57 2.01 -55.24 By element: Atomic # 1 Polarization: 29.72 SS G_CDS: 0.31 Total: 30.03 kcal Atomic # 6 Polarization: -52.50 SS G_CDS: 2.72 Total: -49.78 kcal Atomic # 7 Polarization: -77.66 SS G_CDS: -3.04 Total: -80.70 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Total: -57.25 2.01 -55.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716551980.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.208 kcal (2) G-P(sol) polarization free energy of solvation -57.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.241 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds