Wall clock time and date at job start Mon Mar 30 2020 03:39:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99911 * 2 1 4 4 H 1.48497 * 109.47050 * 240.00009 * 3 2 1 5 5 H 1.48496 * 109.47289 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46492 * 119.99983 * 3 2 1 7 7 C 1.37871 * 119.99684 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00205 * 179.72412 * 7 2 1 9 9 C 1.50706 * 120.00436 * 359.97438 * 7 2 1 10 10 H 1.09003 * 110.64100 * 59.02326 * 9 7 2 11 11 C 1.54594 * 110.72093 * 295.87446 * 9 7 2 12 12 C 1.53992 * 105.13961 * 219.67983 * 11 9 7 13 13 N 1.47902 * 107.05835 * 358.77662 * 12 11 9 14 14 C 1.46902 * 111.00104 * 145.83950 * 13 12 11 15 15 C 1.53007 * 109.47307 * 290.12988 * 14 13 12 16 16 H 1.08996 * 115.54492 * 29.41387 * 15 14 13 17 17 C 1.53004 * 117.49678 * 243.74719 * 15 14 13 18 18 C 1.52989 * 117.49847 * 175.08975 * 15 14 13 19 19 C 1.52998 * 138.58765 * 336.58810 * 18 15 14 20 20 C 1.52997 * 138.58642 * 238.37964 * 18 15 14 21 21 C 1.48737 * 105.94267 * 25.20093 * 13 12 11 22 22 H 0.97004 * 120.00247 * 359.97438 * 1 2 3 23 23 H 1.09001 * 110.31272 * 338.59617 * 11 9 7 24 24 H 1.09001 * 110.31164 * 100.66933 * 11 9 7 25 25 H 1.09005 * 109.91889 * 118.12575 * 12 11 9 26 26 H 1.08999 * 109.92281 * 239.42061 * 12 11 9 27 27 H 1.09003 * 109.46870 * 50.12544 * 14 13 12 28 28 H 1.08994 * 109.47242 * 170.12586 * 14 13 12 29 29 H 1.09000 * 117.50002 * 359.97438 * 17 15 14 30 30 H 1.08992 * 117.49770 * 144.99896 * 17 15 14 31 31 H 1.08999 * 117.49954 * 336.60265 * 19 18 15 32 32 H 1.09000 * 117.49557 * 121.62104 * 19 18 15 33 33 H 1.09000 * 117.50033 * 238.38081 * 20 18 15 34 34 H 1.09007 * 117.49759 * 23.37985 * 20 18 15 35 35 H 1.08996 * 110.84045 * 202.57641 * 21 13 12 36 36 H 1.09002 * 110.58556 * 79.37916 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1028 1.6963 1.2126 7 6 2.0044 -1.1940 -0.0005 8 1 3.0844 -1.1941 -0.0050 9 6 1.2509 -2.4992 -0.0005 10 1 0.6038 -2.5693 -0.8749 11 6 0.4315 -2.6577 1.3007 12 6 0.5759 -4.1409 1.6888 13 7 1.4041 -4.7837 0.6456 14 6 2.2507 -5.8375 1.2206 15 6 3.3376 -5.2013 2.0895 16 1 3.0710 -4.2532 2.5565 17 6 4.7917 -5.3891 1.6520 18 6 4.2560 -6.1412 2.8728 19 6 4.2366 -7.5682 3.4243 20 6 4.6582 -6.4055 4.3251 21 6 2.2309 -3.6980 0.0538 22 1 -0.4851 0.8401 0.0004 23 1 0.8396 -2.0200 2.0849 24 1 -0.6152 -2.4124 1.1210 25 1 1.0681 -4.2251 2.6578 26 1 -0.4062 -4.6124 1.7260 27 1 1.6394 -6.5015 1.8319 28 1 2.7158 -6.4088 0.4173 29 1 4.9740 -5.9663 0.7455 30 1 5.4817 -4.5647 1.8314 31 1 3.2635 -8.0224 3.6111 32 1 5.0164 -8.2498 3.0844 33 1 5.7152 -6.3222 4.5778 34 1 3.9625 -6.0944 5.1046 35 1 2.5651 -3.9674 -0.9480 36 1 3.0816 -3.4706 0.6963 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000722887450.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:13 Heat of formation + Delta-G solvation = 41.066181 kcal Electronic energy + Delta-G solvation = -15187.806380 eV Core-core repulsion = 12865.785466 eV Total energy + Delta-G solvation = -2322.020913 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 221.148 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.40208 -38.58641 -35.27827 -33.75622 -31.75773 -29.88984 -27.34446 -25.56470 -23.29476 -22.79180 -21.45680 -21.11787 -19.71447 -18.43498 -16.87419 -16.59492 -16.27560 -15.88474 -15.48884 -15.15909 -14.66690 -14.21308 -13.89993 -13.45600 -13.01823 -12.84493 -12.63809 -12.53789 -12.36068 -12.29671 -12.05675 -12.02029 -11.58135 -11.11087 -10.96275 -10.84255 -10.79707 -10.61539 -10.49118 -9.17157 -8.13295 -6.23751 1.40988 1.42410 1.50110 2.42343 2.70269 2.80188 3.17517 3.26236 3.43541 3.80979 3.98106 4.16058 4.26575 4.35768 4.52747 4.56329 4.64301 4.71308 4.74668 4.77290 4.82024 4.85544 4.93448 5.00295 5.01108 5.08711 5.25837 5.27655 5.29279 5.32951 5.60517 5.80297 5.87621 6.04121 6.31045 6.41255 6.86481 7.44019 8.96320 Molecular weight = 221.15amu Principal moments of inertia in cm(-1) A = 0.037257 B = 0.006823 C = 0.006267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.359647 B = 4102.943785 C = 4466.851271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.013 3.987 3 Si 0.955 3.045 4 H -0.269 1.269 5 H -0.284 1.284 6 H -0.271 1.271 7 C -0.532 4.532 8 H 0.055 0.945 9 C 0.041 3.959 10 H -0.001 1.001 11 C -0.095 4.095 12 C 0.043 3.957 13 N -0.525 5.525 14 C 0.084 3.916 15 C -0.141 4.141 16 H 0.081 0.919 17 C -0.122 4.122 18 C -0.241 4.241 19 C -0.115 4.115 20 C -0.133 4.133 21 C 0.054 3.946 22 H 0.261 0.739 23 H 0.032 0.968 24 H 0.035 0.965 25 H 0.044 0.956 26 H 0.074 0.926 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.105 0.895 30 H 0.090 0.910 31 H 0.101 0.899 32 H 0.110 0.890 33 H 0.105 0.895 34 H 0.095 0.905 35 H 0.063 0.937 36 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.838 -12.676 6.567 16.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.186 4.186 3 Si 0.780 3.220 4 H -0.194 1.194 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.571 4.571 8 H 0.073 0.927 9 C 0.022 3.978 10 H 0.018 0.982 11 C -0.134 4.134 12 C -0.085 4.085 13 N -0.248 5.248 14 C -0.044 4.044 15 C -0.161 4.161 16 H 0.099 0.901 17 C -0.159 4.159 18 C -0.242 4.242 19 C -0.152 4.152 20 C -0.170 4.170 21 C -0.073 4.073 22 H 0.070 0.930 23 H 0.051 0.949 24 H 0.054 0.946 25 H 0.063 0.937 26 H 0.093 0.907 27 H 0.098 0.902 28 H 0.101 0.899 29 H 0.123 0.877 30 H 0.108 0.892 31 H 0.120 0.880 32 H 0.128 0.872 33 H 0.123 0.877 34 H 0.113 0.887 35 H 0.082 0.918 36 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 7.339 -12.826 6.164 16.012 hybrid contribution 0.559 1.715 0.523 1.878 sum 7.899 -11.111 6.687 15.184 Atomic orbital electron populations 1.70101 1.07339 1.27344 1.51077 1.25769 0.95640 1.02473 0.94714 0.85667 0.78412 0.79020 0.78908 1.19440 1.20975 1.19650 1.21405 0.92934 0.91706 1.51014 0.92702 1.19504 0.92955 0.92302 0.93068 0.98243 1.22112 0.99331 0.93283 0.98632 1.22835 0.97817 0.94441 0.93407 1.64930 1.20728 1.11063 1.28073 1.21910 0.92237 0.93908 0.96368 1.22660 0.93184 0.98675 1.01549 0.90103 1.22814 0.95578 1.01038 0.96458 1.21655 1.06249 1.00379 0.95910 1.22737 1.03311 0.88722 1.00415 1.22774 1.02220 1.01628 0.90382 1.23185 0.95410 0.90487 0.98221 0.93041 0.94896 0.94566 0.93744 0.90725 0.90165 0.89930 0.87705 0.89161 0.88022 0.87224 0.87657 0.88689 0.91830 0.93463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.64 12.63 21.45 0.27 -54.37 16 2 C 0.01 0.74 5.35 84.65 0.45 1.19 16 3 Si 0.95 44.11 29.54 68.60 2.03 46.14 16 4 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 5 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 6 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 7 C -0.53 -29.90 8.40 25.60 0.21 -29.68 16 8 H 0.05 3.00 7.78 -2.91 -0.02 2.98 16 9 C 0.04 2.14 2.93 -10.33 -0.03 2.11 16 10 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 11 C -0.09 -4.64 5.66 31.47 0.18 -4.46 16 12 C 0.04 1.68 6.33 86.45 0.55 2.22 16 13 N -0.53 -19.92 5.53 -882.44 -4.88 -24.80 16 14 C 0.08 2.52 5.75 86.31 0.50 3.02 16 15 C -0.14 -4.18 3.55 -10.79 -0.04 -4.21 16 16 H 0.08 2.86 6.48 -2.39 -0.02 2.84 16 17 C -0.12 -3.18 10.06 30.62 0.31 -2.87 16 18 C -0.24 -5.84 5.40 -52.16 -0.28 -6.12 16 19 C -0.12 -2.11 10.53 30.59 0.32 -1.78 16 20 C -0.13 -2.63 10.53 30.59 0.32 -2.31 16 21 C 0.05 2.32 5.73 86.61 0.50 2.82 16 22 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 23 H 0.03 1.69 7.84 -2.39 -0.02 1.67 16 24 H 0.04 1.88 8.12 -2.39 -0.02 1.86 16 25 H 0.04 1.62 6.50 -2.38 -0.02 1.60 16 26 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 27 H 0.08 2.19 8.08 -2.39 -0.02 2.17 16 28 H 0.08 2.30 7.88 -2.39 -0.02 2.28 16 29 H 0.10 2.47 8.03 -2.39 -0.02 2.45 16 30 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 31 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.09 1.84 8.14 -2.38 -0.02 1.82 16 35 H 0.06 2.65 8.14 -2.39 -0.02 2.63 16 36 H 0.05 2.01 5.75 -2.39 -0.01 1.99 16 Total: -1.00 -61.15 289.13 1.44 -59.72 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: 1.03 Total: 13.39 kcal Atomic # 6 Polarization: -43.07 SS G_CDS: 2.99 Total: -40.08 kcal Atomic # 7 Polarization: -74.56 SS G_CDS: -4.61 Total: -79.17 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Total: -61.15 1.44 -59.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722887450.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.783 kcal (2) G-P(sol) polarization free energy of solvation -61.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.717 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds