Wall clock time and date at job start Mon Mar 30 2020 03:39:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86794 * 120.00396 * 2 1 4 4 H 1.48503 * 109.47454 * 240.00095 * 3 2 1 5 5 H 1.48504 * 109.47174 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47340 * 120.00301 * 3 2 1 7 7 C 1.37881 * 119.99952 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00662 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99819 * 359.97438 * 7 2 1 10 10 H 1.09001 * 110.35015 * 302.13939 * 9 7 2 11 11 C 1.54596 * 110.30946 * 64.28175 * 9 7 2 12 12 C 1.54939 * 102.92012 * 140.87193 * 11 9 7 13 13 N 1.48534 * 103.22817 * 322.58829 * 12 11 9 14 14 C 1.46899 * 110.99830 * 159.71871 * 13 12 11 15 15 C 1.52997 * 109.47254 * 52.60377 * 14 13 12 16 16 H 1.09003 * 115.54795 * 29.32512 * 15 14 13 17 17 C 1.53000 * 117.50165 * 243.62147 * 15 14 13 18 18 C 1.52994 * 59.99907 * 252.50793 * 17 15 14 19 19 C 1.52995 * 138.58994 * 130.88677 * 18 17 15 20 20 C 1.52997 * 138.59016 * 229.10656 * 18 17 15 21 21 C 1.47901 * 105.81788 * 39.20526 * 13 12 11 22 22 H 0.97000 * 119.99459 * 359.97438 * 1 2 3 23 23 H 1.08998 * 110.72754 * 259.23170 * 11 9 7 24 24 H 1.09003 * 110.72082 * 22.34009 * 11 9 7 25 25 H 1.08996 * 110.66801 * 204.15058 * 12 11 9 26 26 H 1.09001 * 110.66461 * 81.02793 * 12 11 9 27 27 H 1.09002 * 109.47043 * 172.60448 * 14 13 12 28 28 H 1.09001 * 109.47354 * 292.60510 * 14 13 12 29 29 H 1.09001 * 117.49810 * 359.97438 * 17 15 14 30 30 H 1.09000 * 117.50365 * 145.02201 * 17 15 14 31 31 H 1.08997 * 117.50050 * 238.38560 * 19 18 17 32 32 H 1.09004 * 117.49702 * 23.41009 * 19 18 17 33 33 H 1.08998 * 117.49480 * 336.59826 * 20 18 17 34 34 H 1.08998 * 117.49501 * 121.58946 * 20 18 17 35 35 H 1.08999 * 109.91618 * 94.02396 * 21 13 12 36 36 H 1.09004 * 109.91578 * 215.11495 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 1 0.5909 -2.5558 0.8651 11 6 0.4373 -2.6490 -1.3065 12 6 0.6019 -4.1516 -1.6468 13 7 2.0053 -4.4374 -1.2532 14 6 2.2113 -5.8772 -1.0467 15 6 1.7288 -6.6435 -2.2799 16 1 1.7971 -6.1044 -3.2248 17 6 0.5534 -7.6059 -2.0985 18 6 1.9658 -8.1547 -2.3100 19 6 2.9049 -9.1817 -1.6744 20 6 2.6761 -9.1875 -3.1873 21 6 2.2343 -3.6842 -0.0012 22 1 -0.4849 0.8401 0.0004 23 1 -0.6114 -2.4044 -1.1378 24 1 0.8557 -2.0240 -2.0954 25 1 0.4592 -4.3222 -2.7138 26 1 -0.0922 -4.7564 -1.0633 27 1 3.2718 -6.0735 -0.8888 28 1 1.6473 -6.2032 -0.1727 29 1 0.1240 -7.6935 -1.1005 30 1 -0.1520 -7.7002 -2.9241 31 1 3.8694 -8.8256 -1.3127 32 1 2.4525 -9.9858 -1.0939 33 1 2.0732 -9.9953 -3.6020 34 1 3.4898 -8.8350 -3.8210 35 1 2.0428 -4.3261 0.8586 36 1 3.2608 -3.3188 0.0299 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000722887453.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:16 Heat of formation + Delta-G solvation = 56.088923 kcal Electronic energy + Delta-G solvation = -14916.499274 eV Core-core repulsion = 12595.129795 eV Total energy + Delta-G solvation = -2321.369478 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 221.148 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.86690 -37.39804 -33.60827 -32.34168 -30.09595 -28.14651 -25.67732 -23.78585 -22.48522 -21.12508 -20.06312 -19.43100 -18.52319 -16.47154 -15.58117 -15.08104 -14.82419 -14.40324 -14.18829 -13.86537 -13.16932 -12.65689 -11.98642 -11.79901 -11.66660 -11.51302 -11.14864 -10.96531 -10.70539 -10.63855 -10.56309 -10.21176 -9.91956 -9.90174 -9.70540 -9.54398 -9.19787 -8.74397 -8.35236 -7.65025 -5.96782 -3.98396 3.36233 3.40308 3.43552 3.65048 3.71018 4.26699 4.48607 4.66088 4.86525 5.00767 5.36173 5.47145 5.51222 5.54257 5.64428 5.68432 5.76277 5.83335 5.89211 5.92983 6.03830 6.04997 6.19260 6.32585 6.36477 6.41482 6.63670 6.92052 7.18640 7.26838 7.51871 7.70261 7.86511 7.95259 8.07985 8.49374 9.02757 9.64652 11.13386 Molecular weight = 221.15amu Principal moments of inertia in cm(-1) A = 0.067535 B = 0.005356 C = 0.005179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 414.498065 B = 5226.899394 C = 5405.508398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.061 3.939 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.507 4.507 8 H 0.056 0.944 9 C 0.040 3.960 10 H 0.029 0.971 11 C -0.093 4.093 12 C 0.033 3.967 13 N -0.516 5.516 14 C 0.078 3.922 15 C -0.086 4.086 16 H 0.112 0.888 17 C -0.129 4.129 18 C -0.231 4.231 19 C -0.132 4.132 20 C -0.132 4.132 21 C 0.045 3.955 22 H 0.259 0.741 23 H 0.057 0.943 24 H 0.061 0.939 25 H 0.062 0.938 26 H 0.029 0.971 27 H 0.070 0.930 28 H 0.030 0.970 29 H 0.093 0.907 30 H 0.094 0.906 31 H 0.095 0.905 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.019 0.981 36 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.140 -14.763 -3.968 15.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.141 4.141 3 Si 0.719 3.281 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.546 4.546 8 H 0.075 0.925 9 C 0.021 3.979 10 H 0.047 0.953 11 C -0.132 4.132 12 C -0.095 4.095 13 N -0.240 5.240 14 C -0.050 4.050 15 C -0.104 4.104 16 H 0.130 0.870 17 C -0.166 4.166 18 C -0.232 4.232 19 C -0.169 4.169 20 C -0.169 4.169 21 C -0.082 4.082 22 H 0.069 0.931 23 H 0.076 0.924 24 H 0.079 0.921 25 H 0.081 0.919 26 H 0.047 0.953 27 H 0.088 0.912 28 H 0.048 0.952 29 H 0.111 0.889 30 H 0.112 0.888 31 H 0.113 0.887 32 H 0.110 0.890 33 H 0.110 0.890 34 H 0.113 0.887 35 H 0.037 0.963 36 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.357 -14.478 -4.359 15.302 hybrid contribution -0.152 0.574 0.633 0.868 sum 2.205 -13.904 -3.726 14.562 Atomic orbital electron populations 1.69960 1.05897 1.26515 1.50707 1.24976 0.94842 0.99020 0.95214 0.86678 0.79591 0.83231 0.78603 1.20248 1.21419 1.20362 1.21151 0.92695 0.90214 1.50495 0.92548 1.19483 0.92479 0.91883 0.94025 0.95284 1.22413 1.00156 0.90806 0.99793 1.23294 0.88244 0.98940 0.98988 1.64794 1.23473 1.04908 1.30797 1.21804 1.00266 0.89055 0.93917 1.22132 0.99880 0.87903 1.00497 0.87010 1.22839 0.89415 1.01943 1.02360 1.21542 0.99543 0.94735 1.07355 1.22588 0.99473 0.99325 0.95492 1.22614 1.01634 0.99225 0.93442 1.23096 1.01818 0.95488 0.87842 0.93086 0.92402 0.92057 0.91918 0.95310 0.91164 0.95198 0.88880 0.88812 0.88689 0.88954 0.88959 0.88741 0.96311 0.91164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.88 12.62 55.43 0.70 -25.18 16 2 C 0.06 1.71 5.34 -17.82 -0.10 1.61 16 3 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 7 C -0.51 -14.13 8.38 -34.44 -0.29 -14.42 16 8 H 0.06 1.56 7.35 -52.49 -0.39 1.17 16 9 C 0.04 1.03 2.87 -90.42 -0.26 0.77 16 10 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 11 C -0.09 -2.22 5.75 -24.87 -0.14 -2.36 16 12 C 0.03 0.65 5.58 -1.90 -0.01 0.64 16 13 N -0.52 -10.19 5.40 -230.46 -1.24 -11.44 16 14 C 0.08 1.28 5.31 -3.83 -0.02 1.26 16 15 C -0.09 -1.22 4.72 -90.62 -0.43 -1.65 16 16 H 0.11 1.68 7.88 -51.93 -0.41 1.27 16 17 C -0.13 -1.62 10.18 -26.73 -0.27 -1.89 16 18 C -0.23 -2.86 5.39 -154.52 -0.83 -3.69 16 19 C -0.13 -1.39 10.53 -26.73 -0.28 -1.67 16 20 C -0.13 -1.35 10.53 -26.73 -0.28 -1.63 16 21 C 0.04 0.98 6.34 -2.76 -0.02 0.96 16 22 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 23 H 0.06 1.43 8.12 -51.93 -0.42 1.01 16 24 H 0.06 1.57 7.86 -51.93 -0.41 1.16 16 25 H 0.06 1.14 7.70 -51.93 -0.40 0.74 16 26 H 0.03 0.54 8.02 -51.93 -0.42 0.13 16 27 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 28 H 0.03 0.49 7.55 -51.93 -0.39 0.10 16 29 H 0.09 1.16 8.03 -51.93 -0.42 0.74 16 30 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 31 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 32 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 35 H 0.02 0.38 7.57 -51.93 -0.39 -0.01 16 36 H 0.07 1.57 7.40 -51.93 -0.38 1.19 16 LS Contribution 292.56 15.07 4.41 4.41 Total: -1.00 -28.59 292.56 -10.21 -38.80 By element: Atomic # 1 Polarization: 5.08 SS G_CDS: -6.12 Total: -1.04 kcal Atomic # 6 Polarization: -19.15 SS G_CDS: -2.93 Total: -22.08 kcal Atomic # 7 Polarization: -36.07 SS G_CDS: -0.54 Total: -36.62 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -28.59 -10.21 -38.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722887453.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.885 kcal (2) G-P(sol) polarization free energy of solvation -28.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds