Wall clock time and date at job start Mon Mar 30 2020 03:39:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86794 * 120.00396 * 2 1 4 4 H 1.48503 * 109.47454 * 240.00095 * 3 2 1 5 5 H 1.48504 * 109.47174 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47340 * 120.00301 * 3 2 1 7 7 C 1.37881 * 119.99952 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00662 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99819 * 359.97438 * 7 2 1 10 10 H 1.09001 * 110.35015 * 302.13939 * 9 7 2 11 11 C 1.54596 * 110.30946 * 64.28175 * 9 7 2 12 12 C 1.54939 * 102.92012 * 140.87193 * 11 9 7 13 13 N 1.48534 * 103.22817 * 322.58829 * 12 11 9 14 14 C 1.46899 * 110.99830 * 159.71871 * 13 12 11 15 15 C 1.52997 * 109.47254 * 52.60377 * 14 13 12 16 16 H 1.09003 * 115.54795 * 29.32512 * 15 14 13 17 17 C 1.53000 * 117.50165 * 243.62147 * 15 14 13 18 18 C 1.52994 * 59.99907 * 252.50793 * 17 15 14 19 19 C 1.52995 * 138.58994 * 130.88677 * 18 17 15 20 20 C 1.52997 * 138.59016 * 229.10656 * 18 17 15 21 21 C 1.47901 * 105.81788 * 39.20526 * 13 12 11 22 22 H 0.97000 * 119.99459 * 359.97438 * 1 2 3 23 23 H 1.08998 * 110.72754 * 259.23170 * 11 9 7 24 24 H 1.09003 * 110.72082 * 22.34009 * 11 9 7 25 25 H 1.08996 * 110.66801 * 204.15058 * 12 11 9 26 26 H 1.09001 * 110.66461 * 81.02793 * 12 11 9 27 27 H 1.09002 * 109.47043 * 172.60448 * 14 13 12 28 28 H 1.09001 * 109.47354 * 292.60510 * 14 13 12 29 29 H 1.09001 * 117.49810 * 359.97438 * 17 15 14 30 30 H 1.09000 * 117.50365 * 145.02201 * 17 15 14 31 31 H 1.08997 * 117.50050 * 238.38560 * 19 18 17 32 32 H 1.09004 * 117.49702 * 23.41009 * 19 18 17 33 33 H 1.08998 * 117.49480 * 336.59826 * 20 18 17 34 34 H 1.08998 * 117.49501 * 121.58946 * 20 18 17 35 35 H 1.08999 * 109.91618 * 94.02396 * 21 13 12 36 36 H 1.09004 * 109.91578 * 215.11495 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 1 0.5909 -2.5558 0.8651 11 6 0.4373 -2.6490 -1.3065 12 6 0.6019 -4.1516 -1.6468 13 7 2.0053 -4.4374 -1.2532 14 6 2.2113 -5.8772 -1.0467 15 6 1.7288 -6.6435 -2.2799 16 1 1.7971 -6.1044 -3.2248 17 6 0.5534 -7.6059 -2.0985 18 6 1.9658 -8.1547 -2.3100 19 6 2.9049 -9.1817 -1.6744 20 6 2.6761 -9.1875 -3.1873 21 6 2.2343 -3.6842 -0.0012 22 1 -0.4849 0.8401 0.0004 23 1 -0.6114 -2.4044 -1.1378 24 1 0.8557 -2.0240 -2.0954 25 1 0.4592 -4.3222 -2.7138 26 1 -0.0922 -4.7564 -1.0633 27 1 3.2718 -6.0735 -0.8888 28 1 1.6473 -6.2032 -0.1727 29 1 0.1240 -7.6935 -1.1005 30 1 -0.1520 -7.7002 -2.9241 31 1 3.8694 -8.8256 -1.3127 32 1 2.4525 -9.9858 -1.0939 33 1 2.0732 -9.9953 -3.6020 34 1 3.4898 -8.8350 -3.8210 35 1 2.0428 -4.3261 0.8586 36 1 3.2608 -3.3188 0.0299 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000722887453.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:16 Heat of formation + Delta-G solvation = 40.179284 kcal Electronic energy + Delta-G solvation = -14917.189167 eV Core-core repulsion = 12595.129795 eV Total energy + Delta-G solvation = -2322.059372 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 221.148 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.17443 -38.74737 -35.27874 -33.80332 -31.74967 -29.97502 -27.31226 -25.63591 -23.27002 -22.44017 -21.46878 -21.28470 -19.61876 -18.57025 -17.00843 -16.43938 -16.22416 -15.87844 -15.44859 -15.25941 -14.65093 -14.46009 -13.78174 -13.34559 -13.14825 -12.84556 -12.60527 -12.49922 -12.38287 -12.27443 -12.01102 -11.95621 -11.57596 -11.25068 -10.87139 -10.83088 -10.78739 -10.61023 -10.47813 -9.23572 -8.12150 -6.20944 1.42559 1.44394 1.51870 2.44677 2.70413 2.79697 3.15168 3.20692 3.47249 3.88069 3.97201 4.16992 4.26013 4.40730 4.47996 4.51636 4.60240 4.66085 4.77380 4.82802 4.83155 4.86055 4.91119 4.97927 5.02484 5.03737 5.24604 5.27317 5.30556 5.38631 5.55634 5.73153 5.85023 6.16786 6.30552 6.39651 6.86906 7.45641 8.97432 Molecular weight = 221.15amu Principal moments of inertia in cm(-1) A = 0.067535 B = 0.005356 C = 0.005179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 414.498065 B = 5226.899394 C = 5405.508398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.012 3.988 3 Si 0.956 3.044 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.527 4.527 8 H 0.053 0.947 9 C 0.031 3.969 10 H 0.000 1.000 11 C -0.086 4.086 12 C 0.050 3.950 13 N -0.524 5.524 14 C 0.083 3.917 15 C -0.103 4.103 16 H 0.103 0.897 17 C -0.123 4.123 18 C -0.243 4.243 19 C -0.129 4.129 20 C -0.122 4.122 21 C 0.055 3.945 22 H 0.261 0.739 23 H 0.039 0.961 24 H 0.036 0.964 25 H 0.082 0.918 26 H 0.039 0.961 27 H 0.074 0.926 28 H 0.031 0.969 29 H 0.093 0.907 30 H 0.105 0.895 31 H 0.097 0.903 32 H 0.106 0.894 33 H 0.109 0.891 34 H 0.099 0.901 35 H 0.031 0.969 36 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.852 -16.184 -4.552 17.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.187 4.187 3 Si 0.781 3.219 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.195 1.195 7 C -0.566 4.566 8 H 0.072 0.928 9 C 0.012 3.988 10 H 0.018 0.982 11 C -0.125 4.125 12 C -0.078 4.078 13 N -0.248 5.248 14 C -0.045 4.045 15 C -0.121 4.121 16 H 0.121 0.879 17 C -0.160 4.160 18 C -0.244 4.244 19 C -0.166 4.166 20 C -0.158 4.158 21 C -0.073 4.073 22 H 0.069 0.931 23 H 0.058 0.942 24 H 0.055 0.945 25 H 0.100 0.900 26 H 0.058 0.942 27 H 0.092 0.908 28 H 0.049 0.951 29 H 0.111 0.889 30 H 0.123 0.877 31 H 0.115 0.885 32 H 0.124 0.876 33 H 0.127 0.873 34 H 0.117 0.883 35 H 0.049 0.951 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.078 -15.917 -4.944 16.949 hybrid contribution -0.366 0.971 0.826 1.326 sum 2.713 -14.946 -4.118 15.738 Atomic orbital electron populations 1.70082 1.07251 1.27318 1.51361 1.25757 0.95688 1.02438 0.94799 0.85650 0.78392 0.78997 0.78854 1.19730 1.20938 1.19541 1.21491 0.92815 0.91655 1.50605 0.92845 1.19475 0.92981 0.92825 0.93534 0.98198 1.22192 0.98454 0.93600 0.98260 1.23128 0.88624 0.95705 1.00312 1.64749 1.23295 1.07174 1.29572 1.21796 1.00653 0.86842 0.95183 1.21922 1.02280 0.88999 0.98923 0.87935 1.22861 0.89559 1.00740 1.02823 1.21668 0.99340 0.93363 1.10001 1.22738 0.99044 0.98711 0.96080 1.22765 1.01275 0.98395 0.93408 1.22850 1.00222 0.94680 0.89498 0.93064 0.94185 0.94475 0.89986 0.94226 0.90799 0.95127 0.88894 0.87673 0.88512 0.87620 0.87323 0.88273 0.95108 0.91898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.49 12.62 21.45 0.27 -54.22 16 2 C 0.01 0.67 5.34 84.66 0.45 1.12 16 3 Si 0.96 44.51 29.54 68.60 2.03 46.53 16 4 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 5 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 6 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 7 C -0.53 -29.95 8.38 25.60 0.21 -29.74 16 8 H 0.05 2.99 7.35 -2.91 -0.02 2.97 16 9 C 0.03 1.61 2.87 -10.66 -0.03 1.58 16 10 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 11 C -0.09 -4.21 5.75 31.80 0.18 -4.03 16 12 C 0.05 1.93 5.58 86.65 0.48 2.41 16 13 N -0.52 -20.29 5.40 -883.03 -4.77 -25.06 16 14 C 0.08 2.59 5.31 86.30 0.46 3.05 16 15 C -0.10 -2.75 4.72 -10.80 -0.05 -2.80 16 16 H 0.10 2.93 7.88 -2.39 -0.02 2.91 16 17 C -0.12 -2.80 10.18 30.59 0.31 -2.49 16 18 C -0.24 -5.38 5.39 -52.19 -0.28 -5.66 16 19 C -0.13 -2.34 10.53 30.59 0.32 -2.01 16 20 C -0.12 -2.11 10.53 30.59 0.32 -1.79 16 21 C 0.06 2.41 6.34 86.44 0.55 2.96 16 22 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 23 H 0.04 2.04 8.12 -2.39 -0.02 2.02 16 24 H 0.04 1.94 7.86 -2.39 -0.02 1.93 16 25 H 0.08 2.87 7.70 -2.39 -0.02 2.86 16 26 H 0.04 1.45 8.02 -2.39 -0.02 1.44 16 27 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 28 H 0.03 0.96 7.55 -2.39 -0.02 0.94 16 29 H 0.09 2.10 8.03 -2.39 -0.02 2.09 16 30 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 31 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.03 1.25 7.57 -2.39 -0.02 1.23 16 36 H 0.06 2.82 7.40 -2.38 -0.02 2.80 16 Total: -1.00 -61.17 292.56 1.49 -59.68 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: 1.03 Total: 10.45 kcal Atomic # 6 Polarization: -40.32 SS G_CDS: 2.93 Total: -37.39 kcal Atomic # 7 Polarization: -74.78 SS G_CDS: -4.49 Total: -79.27 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.53 kcal Total: -61.17 1.49 -59.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722887453.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.862 kcal (2) G-P(sol) polarization free energy of solvation -61.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.683 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds