Wall clock time and date at job start Mon Mar 30 2020 03:11:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 119.99702 * 2 1 4 4 H 1.48498 * 109.47285 * 89.99932 * 3 2 1 5 5 H 1.48506 * 109.46899 * 210.00066 * 3 2 1 6 6 H 1.48500 * 109.47267 * 329.99871 * 3 2 1 7 7 C 1.37874 * 120.00107 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99669 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99821 * 359.97438 * 7 2 1 10 10 N 1.46905 * 109.46872 * 176.25594 * 9 7 2 11 11 C 1.46901 * 110.99865 * 292.95149 * 10 9 7 12 12 C 1.53005 * 109.47027 * 169.99944 * 11 10 9 13 13 H 1.09000 * 115.54752 * 330.58008 * 12 11 10 14 14 C 1.52998 * 117.49524 * 116.25466 * 12 11 10 15 15 C 1.52997 * 117.49729 * 184.90956 * 12 11 10 16 16 C 1.52992 * 138.58458 * 121.61990 * 15 12 11 17 17 C 1.52995 * 138.58518 * 23.40835 * 15 12 11 18 18 C 1.46899 * 111.00086 * 168.99671 * 10 9 7 19 19 C 1.53000 * 117.49859 * 4.34186 * 18 10 9 20 20 C 1.52995 * 59.99951 * 252.50977 * 19 18 10 21 21 H 0.97006 * 120.00092 * 0.02562 * 1 2 3 22 22 H 1.08994 * 109.47036 * 296.24746 * 9 7 2 23 23 H 1.08995 * 109.47101 * 56.25807 * 9 7 2 24 24 H 1.08997 * 109.47183 * 289.99785 * 11 10 9 25 25 H 1.09000 * 109.47201 * 50.00320 * 11 10 9 26 26 H 1.09002 * 117.49489 * 214.97465 * 14 12 11 27 27 H 1.08996 * 117.50355 * 359.97438 * 14 12 11 28 28 H 1.09004 * 117.49943 * 336.59331 * 16 15 12 29 29 H 1.08998 * 117.49852 * 121.62084 * 16 15 12 30 30 H 1.08996 * 117.49958 * 238.37641 * 17 15 12 31 31 H 1.08997 * 117.50202 * 23.37902 * 17 15 12 32 32 H 1.09003 * 115.54775 * 150.04885 * 18 10 9 33 33 H 1.09005 * 117.49586 * 359.97438 * 19 18 10 34 34 H 1.08994 * 117.49891 * 145.01595 * 19 18 10 35 35 H 1.09004 * 117.50074 * 252.51161 * 20 19 18 36 36 H 1.09000 * 117.51992 * 107.47827 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 1.4000 5 1 3.5466 1.4402 -0.7001 6 1 1.4465 2.6527 -0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 7 2.2031 -3.6141 -0.0916 11 6 2.8785 -3.6245 -1.3961 12 6 4.0292 -4.6325 -1.3667 13 1 4.4926 -4.7886 -0.3925 14 6 3.9381 -5.8361 -2.3068 15 6 4.9324 -4.7096 -2.5992 16 6 6.4131 -4.5480 -2.9484 17 6 5.3487 -3.8223 -3.7739 18 6 1.5368 -4.8977 0.1665 19 6 0.0207 -4.8780 0.3715 20 6 0.9506 -5.1213 1.5618 21 1 -0.4850 0.8401 -0.0004 22 1 0.6761 -2.5867 0.9213 23 1 0.5747 -2.5281 -0.8548 24 1 2.1668 -3.9080 -2.1715 25 1 3.2716 -2.6305 -1.6096 26 1 4.3421 -6.7840 -1.9513 27 1 3.0584 -5.9101 -2.9460 28 1 7.0259 -3.9464 -2.2769 29 1 6.9167 -5.3968 -3.4110 30 1 5.1520 -4.1937 -4.7796 31 1 5.2608 -2.7435 -3.6457 32 1 1.9649 -5.7605 -0.3439 33 1 -0.4822 -3.9126 0.3153 34 1 -0.5490 -5.7279 -0.0042 35 1 0.9926 -6.1314 1.9694 36 1 1.0597 -4.3163 2.2885 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000722889685.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:18 Heat of formation + Delta-G solvation = 71.554677 kcal Electronic energy + Delta-G solvation = -15066.117677 eV Core-core repulsion = 12745.418844 eV Total energy + Delta-G solvation = -2320.698833 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 221.148 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.08367 -38.74308 -35.45250 -34.54060 -32.96707 -29.25314 -26.70844 -24.50850 -23.25979 -23.11587 -22.05398 -20.68519 -19.65878 -18.74612 -17.09808 -16.74275 -16.12089 -15.82854 -15.78779 -15.27883 -14.52530 -14.33894 -13.90413 -13.48386 -13.36542 -12.83541 -12.56792 -12.41508 -12.35812 -12.27761 -12.09951 -11.87069 -11.68625 -11.18513 -11.16160 -10.78739 -10.74532 -10.66467 -10.50600 -8.83380 -8.23005 -6.33356 1.37592 1.39142 1.50252 2.37071 2.71225 2.82038 2.97593 3.09070 3.31172 3.50699 3.94741 4.00277 4.08240 4.15187 4.29027 4.43054 4.58325 4.66645 4.76918 4.79277 4.81630 4.85830 4.88092 4.98121 5.01784 5.03185 5.13124 5.19290 5.29878 5.32944 5.34099 5.39769 5.62727 6.05115 6.34179 6.66059 6.84030 7.36348 8.87693 Molecular weight = 221.15amu Principal moments of inertia in cm(-1) A = 0.019064 B = 0.009490 C = 0.006718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.386898 B = 2949.646204 C = 4166.633579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.003 3.997 3 Si 0.967 3.033 4 H -0.272 1.272 5 H -0.265 1.265 6 H -0.280 1.280 7 C -0.527 4.527 8 H 0.059 0.941 9 C 0.213 3.787 10 N -0.514 5.514 11 C 0.106 3.894 12 C -0.098 4.098 13 H 0.104 0.896 14 C -0.112 4.112 15 C -0.250 4.250 16 C -0.115 4.115 17 C -0.139 4.139 18 C 0.017 3.983 19 C -0.227 4.227 20 C -0.164 4.164 21 H 0.265 0.735 22 H 0.009 0.991 23 H -0.036 1.036 24 H 0.017 0.983 25 H 0.055 0.945 26 H 0.115 0.885 27 H 0.093 0.907 28 H 0.095 0.905 29 H 0.116 0.884 30 H 0.108 0.892 31 H 0.083 0.917 32 H 0.134 0.866 33 H 0.067 0.933 34 H 0.112 0.888 35 H 0.125 0.875 36 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.384 -11.509 -4.646 14.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.195 4.195 3 Si 0.791 3.209 4 H -0.198 1.198 5 H -0.189 1.189 6 H -0.205 1.205 7 C -0.565 4.565 8 H 0.077 0.923 9 C 0.087 3.913 10 N -0.236 5.236 11 C -0.022 4.022 12 C -0.117 4.117 13 H 0.122 0.878 14 C -0.149 4.149 15 C -0.250 4.250 16 C -0.151 4.151 17 C -0.176 4.176 18 C -0.093 4.093 19 C -0.266 4.266 20 C -0.202 4.202 21 H 0.074 0.926 22 H 0.027 0.973 23 H -0.019 1.019 24 H 0.035 0.965 25 H 0.074 0.926 26 H 0.133 0.867 27 H 0.112 0.888 28 H 0.113 0.887 29 H 0.134 0.866 30 H 0.126 0.874 31 H 0.102 0.898 32 H 0.151 0.849 33 H 0.086 0.914 34 H 0.130 0.870 35 H 0.143 0.857 36 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 8.607 -11.303 -4.293 14.841 hybrid contribution -0.828 1.206 -0.422 1.523 sum 7.779 -10.097 -4.716 13.590 Atomic orbital electron populations 1.70084 1.07657 1.27894 1.51681 1.25889 0.95745 1.03097 0.94763 0.85424 0.78583 0.78366 0.78528 1.19777 1.18942 1.20537 1.21489 0.93499 0.91353 1.50206 0.92316 1.19370 0.89931 0.88361 0.93650 1.61856 1.29866 1.01682 1.30207 1.21360 0.93726 0.98392 0.88750 1.21927 0.97096 0.98682 0.93961 0.87756 1.22899 0.98641 0.92662 1.00661 1.21733 0.97740 1.05045 1.00530 1.22733 0.88541 1.02434 1.01414 1.22695 1.02407 0.97532 0.94948 1.22828 0.92135 0.93875 1.00417 1.23479 0.94972 1.02681 1.05421 1.23025 1.03110 1.02862 0.91176 0.92649 0.97337 1.01861 0.96480 0.92607 0.86691 0.88838 0.88685 0.86625 0.87370 0.89807 0.84868 0.91413 0.86969 0.85670 0.91131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.21 13.29 21.45 0.28 -56.93 16 2 C 0.00 0.19 5.46 84.65 0.46 0.65 16 3 Si 0.97 45.27 29.54 68.60 2.03 47.30 16 4 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 5 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 6 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 7 C -0.53 -30.86 8.30 25.60 0.21 -30.65 16 8 H 0.06 3.41 7.40 -2.91 -0.02 3.39 16 9 C 0.21 11.68 3.35 85.56 0.29 11.97 16 10 N -0.51 -23.10 4.69 -875.52 -4.11 -27.20 16 11 C 0.11 4.31 5.08 86.30 0.44 4.75 16 12 C -0.10 -3.13 4.89 -10.79 -0.05 -3.18 16 13 H 0.10 3.43 8.14 -2.39 -0.02 3.41 16 14 C -0.11 -2.78 9.86 30.62 0.30 -2.47 16 15 C -0.25 -6.80 5.40 -52.16 -0.28 -7.08 16 16 C -0.11 -2.50 10.53 30.59 0.32 -2.18 16 17 C -0.14 -3.45 10.53 30.60 0.32 -3.13 16 18 C 0.02 0.62 5.80 44.91 0.26 0.88 16 19 C -0.23 -8.29 9.50 30.59 0.29 -8.00 16 20 C -0.16 -5.56 10.00 30.59 0.31 -5.26 16 21 H 0.26 15.23 8.31 -92.70 -0.77 14.46 16 22 H 0.01 0.51 6.17 -2.39 -0.01 0.49 16 23 H -0.04 -2.19 7.80 -2.39 -0.02 -2.21 16 24 H 0.02 0.70 7.85 -2.39 -0.02 0.68 16 25 H 0.06 2.59 6.80 -2.39 -0.02 2.58 16 26 H 0.11 2.29 8.14 -2.39 -0.02 2.27 16 27 H 0.09 2.29 8.03 -2.39 -0.02 2.27 16 28 H 0.09 2.06 8.14 -2.38 -0.02 2.04 16 29 H 0.12 1.96 8.14 -2.39 -0.02 1.95 16 30 H 0.11 2.28 8.14 -2.39 -0.02 2.26 16 31 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 32 H 0.13 4.11 7.02 -2.39 -0.02 4.09 16 33 H 0.07 3.05 5.88 -2.38 -0.01 3.03 16 34 H 0.11 3.34 8.14 -2.39 -0.02 3.33 16 35 H 0.13 3.24 8.14 -2.38 -0.02 3.22 16 36 H 0.07 2.76 7.79 -2.39 -0.02 2.74 16 Total: -1.00 -65.30 295.72 2.11 -63.19 By element: Atomic # 1 Polarization: 16.31 SS G_CDS: 1.04 Total: 17.34 kcal Atomic # 6 Polarization: -46.57 SS G_CDS: 2.87 Total: -43.70 kcal Atomic # 7 Polarization: -80.31 SS G_CDS: -3.82 Total: -84.13 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -65.30 2.11 -63.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722889685.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.748 kcal (2) G-P(sol) polarization free energy of solvation -65.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.193 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds