Wall clock time and date at job start Mon Mar 30 2020 03:05:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46500 * 120.00020 * 2 1 4 4 C 1.50706 * 109.46949 * 89.99910 * 3 2 1 5 5 H 1.07995 * 120.00167 * 359.72205 * 4 3 2 6 6 C 1.37879 * 119.99394 * 179.97438 * 4 3 2 7 7 N 1.31514 * 120.00338 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 119.99424 * 180.02562 * 6 4 3 9 9 H 1.48490 * 109.47405 * 60.00219 * 8 6 4 10 10 H 1.48503 * 109.46845 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47399 * 299.99813 * 8 6 4 12 12 C 1.39008 * 119.99895 * 179.97438 * 2 1 3 13 13 C 1.39138 * 119.70342 * 184.73246 * 12 2 1 14 14 C 1.38302 * 119.09635 * 179.76049 * 13 12 2 15 15 C 1.38891 * 118.50325 * 0.50094 * 14 13 12 16 16 C 1.50694 * 120.33412 * 179.71106 * 15 14 13 17 17 N 1.46893 * 109.47490 * 270.02452 * 16 15 14 18 18 C 1.38028 * 119.32712 * 359.73410 * 15 14 13 19 19 N 1.31974 * 120.85486 * 0.02562 * 18 15 14 20 20 H 1.09001 * 109.47412 * 89.99916 * 1 2 3 21 21 H 1.09000 * 109.47567 * 210.00198 * 1 2 3 22 22 H 1.09002 * 109.47279 * 329.99646 * 1 2 3 23 23 H 1.09000 * 109.47175 * 329.99936 * 3 2 1 24 24 H 1.09001 * 109.47297 * 209.99443 * 3 2 1 25 25 H 0.96996 * 119.99730 * 179.97438 * 7 6 4 26 26 H 1.08001 * 120.45414 * 359.97167 * 13 12 2 27 27 H 1.07994 * 120.74888 * 180.22034 * 14 13 12 28 28 H 1.09001 * 109.47401 * 30.02538 * 16 15 14 29 29 H 1.09005 * 109.47064 * 150.02226 * 16 15 14 30 30 H 1.00896 * 111.00529 * 180.02562 * 17 16 15 31 31 H 1.00911 * 111.00000 * 303.96011 * 17 16 15 32 32 H 1.07994 * 119.56787 * 179.97438 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4486 1.7038 1.4209 5 1 2.0938 1.0983 2.2417 6 6 3.1268 2.8775 1.6727 7 7 3.5542 3.6176 0.6731 8 14 3.4388 3.4163 3.4339 9 1 4.2411 2.3811 4.1336 10 1 4.1812 4.7025 3.4339 11 1 2.1414 3.5943 4.1343 12 6 2.1600 -1.2039 0.0005 13 6 3.5478 -1.1987 0.1002 14 6 4.2262 -2.4039 0.1046 15 6 3.4921 -3.5781 -0.0019 16 6 4.1897 -4.9139 -0.0079 17 7 4.5205 -5.2873 -1.3896 18 6 2.1172 -3.5091 -0.1026 19 7 1.4959 -2.3448 -0.0993 20 1 -0.3634 0.0000 -1.0277 21 1 -0.3634 -0.8899 0.5138 22 1 -0.3634 0.8900 0.5139 23 1 1.6084 2.0284 -0.5138 24 1 3.1499 1.1384 -0.5137 25 1 4.0310 4.4434 0.8504 26 1 4.0876 -0.2664 0.1767 27 1 5.3028 -2.4311 0.1844 28 1 5.1053 -4.8483 0.5798 29 1 3.5332 -5.6686 0.4252 30 1 4.9890 -6.1804 -1.4205 31 1 3.6953 -5.2919 -1.9704 32 1 1.5426 -4.4197 -0.1860 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000723198629.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:47 Heat of formation + Delta-G solvation = 39.868412 kcal Electronic energy + Delta-G solvation = -14631.622429 eV Core-core repulsion = 12206.009233 eV Total energy + Delta-G solvation = -2425.613196 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.64527 -36.27554 -34.38542 -32.64447 -31.57717 -29.59166 -27.88734 -25.69771 -24.23872 -22.43676 -22.16606 -20.10513 -16.73967 -16.47437 -16.16539 -15.80889 -14.68670 -14.47603 -14.13844 -13.87670 -13.72752 -13.28127 -12.52944 -12.41728 -12.12917 -12.08332 -11.41184 -11.37225 -11.09538 -10.88368 -10.58110 -10.14943 -9.86636 -9.19734 -8.92340 -8.75467 -8.64462 -8.52604 -6.68039 -6.09587 -4.21660 1.95438 2.07826 3.26594 3.31072 3.34205 3.95096 4.36331 4.48362 4.88126 5.11479 5.18465 5.20144 5.33920 5.57963 5.72322 5.86171 6.12822 6.14886 6.21239 6.45158 6.48321 6.64436 6.90405 7.02777 7.14847 7.25078 7.31667 7.45284 7.73076 7.92862 8.11118 8.39506 8.76438 8.95383 9.45661 10.92095 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.034750 B = 0.007107 C = 0.006435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.567927 B = 3938.833375 C = 4350.002158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.592 5.592 3 C 0.251 3.749 4 C -0.535 4.535 5 H 0.060 0.940 6 C 0.063 3.937 7 N -0.894 5.894 8 Si 0.898 3.102 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.276 1.276 12 C 0.416 3.584 13 C -0.224 4.224 14 C -0.021 4.021 15 C -0.229 4.229 16 C 0.123 3.877 17 N -0.848 5.848 18 C 0.147 3.853 19 N -0.560 5.560 20 H 0.035 0.965 21 H 0.062 0.938 22 H 0.063 0.937 23 H 0.036 0.964 24 H 0.037 0.963 25 H 0.266 0.734 26 H 0.143 0.857 27 H 0.123 0.877 28 H 0.072 0.928 29 H 0.027 0.973 30 H 0.335 0.665 31 H 0.340 0.660 32 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.490 -12.814 -1.689 12.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.301 5.301 3 C 0.131 3.869 4 C -0.574 4.574 5 H 0.078 0.922 6 C -0.139 4.139 7 N -0.532 5.532 8 Si 0.726 3.274 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.202 1.202 12 C 0.179 3.821 13 C -0.249 4.249 14 C -0.047 4.047 15 C -0.235 4.235 16 C -0.008 4.008 17 N -0.377 5.377 18 C -0.012 4.012 19 N -0.279 5.279 20 H 0.054 0.946 21 H 0.081 0.919 22 H 0.082 0.918 23 H 0.054 0.946 24 H 0.055 0.945 25 H 0.075 0.925 26 H 0.161 0.839 27 H 0.141 0.859 28 H 0.091 0.909 29 H 0.045 0.955 30 H 0.147 0.853 31 H 0.152 0.848 32 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -0.965 -11.689 -1.796 11.866 hybrid contribution 0.468 -0.388 1.220 1.363 sum -0.497 -12.078 -0.576 12.101 Atomic orbital electron populations 1.21372 0.80640 1.01910 0.99854 1.47023 1.05261 1.03604 1.74169 1.19376 0.92108 0.78129 0.97278 1.21512 1.36689 1.06747 0.92444 0.92222 1.24953 0.95305 0.96155 0.97507 1.69917 1.38078 1.14353 1.30877 0.86553 0.78475 0.77870 0.84546 1.20108 1.21122 1.20181 1.18480 0.88560 0.86066 0.89037 1.21672 0.93816 0.99752 1.09647 1.21064 0.99304 0.91186 0.93120 1.20146 0.94667 0.95168 1.13562 1.20367 0.98293 0.92692 0.89454 1.58764 1.31733 1.36588 1.10665 1.21991 0.91064 0.94368 0.93789 1.67169 1.40488 0.97515 1.22710 0.94647 0.91901 0.91781 0.94584 0.94497 0.92478 0.83937 0.85942 0.90934 0.95459 0.85284 0.84773 0.84551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.04 10.42 59.84 0.62 2.67 16 2 N -0.59 -13.30 2.97 -183.10 -0.54 -13.84 16 3 C 0.25 6.32 4.79 -5.19 -0.02 6.29 16 4 C -0.54 -14.53 9.34 -34.44 -0.32 -14.85 16 5 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 6 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 7 N -0.89 -25.36 13.29 55.43 0.74 -24.62 16 8 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 16 9 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 10 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 11 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 12 C 0.42 8.98 7.37 -155.02 -1.14 7.84 16 13 C -0.22 -4.65 9.19 -39.22 -0.36 -5.01 16 14 C -0.02 -0.36 9.85 -39.32 -0.39 -0.75 16 15 C -0.23 -3.58 5.41 -104.46 -0.57 -4.15 16 16 C 0.12 1.47 6.93 -4.98 -0.03 1.44 16 17 N -0.85 -9.31 9.61 -11.41 -0.11 -9.42 16 18 C 0.15 2.42 10.85 -17.57 -0.19 2.23 16 19 N -0.56 -11.06 9.16 -12.44 -0.11 -11.17 16 20 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 21 H 0.06 1.16 7.45 -51.93 -0.39 0.77 16 22 H 0.06 1.21 8.07 -51.93 -0.42 0.79 16 23 H 0.04 0.95 8.07 -51.93 -0.42 0.53 16 24 H 0.04 0.97 6.37 -51.93 -0.33 0.64 16 25 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 26 H 0.14 3.20 6.22 -52.49 -0.33 2.87 16 27 H 0.12 1.90 8.06 -52.49 -0.42 1.48 16 28 H 0.07 0.85 8.09 -51.93 -0.42 0.43 16 29 H 0.03 0.29 8.09 -51.93 -0.42 -0.13 16 30 H 0.34 2.81 9.08 -39.29 -0.36 2.46 16 31 H 0.34 3.56 8.99 -39.29 -0.35 3.20 16 32 H 0.14 1.80 8.06 -52.49 -0.42 1.38 16 LS Contribution 276.32 15.07 4.16 4.16 Total: -1.00 -29.44 276.32 -7.63 -37.08 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -4.25 Total: 4.35 kcal Atomic # 6 Polarization: -0.15 SS G_CDS: -2.50 Total: -2.65 kcal Atomic # 7 Polarization: -59.03 SS G_CDS: -0.03 Total: -59.06 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -29.44 -7.63 -37.08 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723198629.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.948 kcal (2) G-P(sol) polarization free energy of solvation -29.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.079 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds