Wall clock time and date at job start Mon Mar 30 2020 03:05:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46500 * 120.00020 * 2 1 4 4 C 1.50706 * 109.46949 * 89.99910 * 3 2 1 5 5 H 1.07995 * 120.00167 * 359.72205 * 4 3 2 6 6 C 1.37879 * 119.99394 * 179.97438 * 4 3 2 7 7 N 1.31514 * 120.00338 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 119.99424 * 180.02562 * 6 4 3 9 9 H 1.48490 * 109.47405 * 60.00219 * 8 6 4 10 10 H 1.48503 * 109.46845 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47399 * 299.99813 * 8 6 4 12 12 C 1.39008 * 119.99895 * 179.97438 * 2 1 3 13 13 C 1.39138 * 119.70342 * 184.73246 * 12 2 1 14 14 C 1.38302 * 119.09635 * 179.76049 * 13 12 2 15 15 C 1.38891 * 118.50325 * 0.50094 * 14 13 12 16 16 C 1.50694 * 120.33412 * 179.71106 * 15 14 13 17 17 N 1.46893 * 109.47490 * 270.02452 * 16 15 14 18 18 C 1.38028 * 119.32712 * 359.73410 * 15 14 13 19 19 N 1.31974 * 120.85486 * 0.02562 * 18 15 14 20 20 H 1.09001 * 109.47412 * 89.99916 * 1 2 3 21 21 H 1.09000 * 109.47567 * 210.00198 * 1 2 3 22 22 H 1.09002 * 109.47279 * 329.99646 * 1 2 3 23 23 H 1.09000 * 109.47175 * 329.99936 * 3 2 1 24 24 H 1.09001 * 109.47297 * 209.99443 * 3 2 1 25 25 H 0.96996 * 119.99730 * 179.97438 * 7 6 4 26 26 H 1.08001 * 120.45414 * 359.97167 * 13 12 2 27 27 H 1.07994 * 120.74888 * 180.22034 * 14 13 12 28 28 H 1.09001 * 109.47401 * 30.02538 * 16 15 14 29 29 H 1.09005 * 109.47064 * 150.02226 * 16 15 14 30 30 H 1.00896 * 111.00529 * 180.02562 * 17 16 15 31 31 H 1.00911 * 111.00000 * 303.96011 * 17 16 15 32 32 H 1.07994 * 119.56787 * 179.97438 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4486 1.7038 1.4209 5 1 2.0938 1.0983 2.2417 6 6 3.1268 2.8775 1.6727 7 7 3.5542 3.6176 0.6731 8 14 3.4388 3.4163 3.4339 9 1 4.2411 2.3811 4.1336 10 1 4.1812 4.7025 3.4339 11 1 2.1414 3.5943 4.1343 12 6 2.1600 -1.2039 0.0005 13 6 3.5478 -1.1987 0.1002 14 6 4.2262 -2.4039 0.1046 15 6 3.4921 -3.5781 -0.0019 16 6 4.1897 -4.9139 -0.0079 17 7 4.5205 -5.2873 -1.3896 18 6 2.1172 -3.5091 -0.1026 19 7 1.4959 -2.3448 -0.0993 20 1 -0.3634 0.0000 -1.0277 21 1 -0.3634 -0.8899 0.5138 22 1 -0.3634 0.8900 0.5139 23 1 1.6084 2.0284 -0.5138 24 1 3.1499 1.1384 -0.5137 25 1 4.0310 4.4434 0.8504 26 1 4.0876 -0.2664 0.1767 27 1 5.3028 -2.4311 0.1844 28 1 5.1053 -4.8483 0.5798 29 1 3.5332 -5.6686 0.4252 30 1 4.9890 -6.1804 -1.4205 31 1 3.6953 -5.2919 -1.9704 32 1 1.5426 -4.4197 -0.1860 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000723198629.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:46 Heat of formation + Delta-G solvation = 20.183245 kcal Electronic energy + Delta-G solvation = -14632.476042 eV Core-core repulsion = 12206.009233 eV Total energy + Delta-G solvation = -2426.466809 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.11281 -37.82096 -35.64343 -34.59272 -33.02900 -30.94832 -29.78663 -27.18331 -25.81952 -24.04487 -23.59266 -21.60813 -18.68507 -18.18438 -17.56422 -16.97850 -16.48194 -15.78833 -15.59727 -15.27844 -14.99891 -14.91443 -14.25410 -13.84941 -13.75253 -13.27432 -13.12522 -13.08103 -12.73762 -12.62219 -12.37231 -12.00781 -11.81673 -10.67943 -10.66616 -10.50857 -10.20999 -9.49953 -8.44960 -8.02956 -6.38939 0.51793 0.63037 1.38933 1.40191 1.48789 2.27401 2.44142 3.05378 3.07546 3.75743 3.96781 4.04252 4.20745 4.27809 4.32174 4.58956 4.68871 4.79015 4.85843 4.91437 4.96328 5.07723 5.14866 5.29872 5.57085 5.64111 5.87952 6.02413 6.19467 6.31839 6.70092 6.73134 6.77410 7.27105 7.40823 8.82404 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.034750 B = 0.007107 C = 0.006435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.567927 B = 3938.833375 C = 4350.002158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.110 3.890 2 N -0.610 5.610 3 C 0.269 3.731 4 C -0.545 4.545 5 H 0.049 0.951 6 C 0.017 3.983 7 N -0.924 5.924 8 Si 0.963 3.037 9 H -0.273 1.273 10 H -0.278 1.278 11 H -0.270 1.270 12 C 0.391 3.609 13 C -0.252 4.252 14 C -0.020 4.020 15 C -0.212 4.212 16 C 0.126 3.874 17 N -0.857 5.857 18 C 0.144 3.856 19 N -0.568 5.568 20 H 0.048 0.952 21 H 0.070 0.930 22 H 0.059 0.941 23 H 0.018 0.982 24 H 0.016 0.984 25 H 0.269 0.731 26 H 0.113 0.887 27 H 0.141 0.859 28 H 0.079 0.921 29 H 0.053 0.947 30 H 0.353 0.647 31 H 0.344 0.656 32 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.313 -15.109 -0.984 15.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.033 4.033 2 N -0.320 5.320 3 C 0.148 3.852 4 C -0.584 4.584 5 H 0.067 0.933 6 C -0.183 4.183 7 N -0.563 5.563 8 Si 0.787 3.213 9 H -0.198 1.198 10 H -0.203 1.203 11 H -0.195 1.195 12 C 0.156 3.844 13 C -0.277 4.277 14 C -0.046 4.046 15 C -0.218 4.218 16 C -0.004 4.004 17 N -0.389 5.389 18 C -0.015 4.015 19 N -0.287 5.287 20 H 0.066 0.934 21 H 0.089 0.911 22 H 0.078 0.922 23 H 0.036 0.964 24 H 0.034 0.966 25 H 0.078 0.922 26 H 0.131 0.869 27 H 0.159 0.841 28 H 0.097 0.903 29 H 0.071 0.929 30 H 0.167 0.833 31 H 0.157 0.843 32 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -0.791 -14.035 -1.099 14.100 hybrid contribution 0.458 0.138 0.943 1.058 sum -0.332 -13.896 -0.156 13.901 Atomic orbital electron populations 1.21409 0.79132 1.02018 1.00704 1.46878 1.06159 1.03103 1.75899 1.18895 0.91131 0.79231 0.95956 1.21674 1.36836 1.06900 0.92975 0.93296 1.25745 0.94895 0.96095 1.01542 1.70020 1.38647 1.14764 1.32895 0.85542 0.78540 0.77603 0.79600 1.19798 1.20256 1.19491 1.18600 0.88849 0.86412 0.90569 1.21566 0.93897 0.99965 1.12302 1.21353 1.00397 0.90770 0.92077 1.20577 0.94553 0.96309 1.10326 1.20365 0.98770 0.90874 0.90417 1.58674 1.32187 1.38066 1.09993 1.22715 0.91991 0.94494 0.92267 1.67198 1.40937 0.97799 1.22754 0.93382 0.91146 0.92180 0.96420 0.96591 0.92218 0.86912 0.84095 0.90256 0.92937 0.83311 0.84333 0.80563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 4.31 10.42 127.77 1.33 5.64 16 2 N -0.61 -28.29 2.97 -733.22 -2.18 -30.46 16 3 C 0.27 14.25 4.79 85.63 0.41 14.66 16 4 C -0.55 -30.56 9.34 25.60 0.24 -30.32 16 5 H 0.05 2.79 7.81 -2.91 -0.02 2.77 16 6 C 0.02 0.95 5.46 84.66 0.46 1.41 16 7 N -0.92 -53.65 13.29 21.45 0.28 -53.37 16 8 Si 0.96 43.68 29.54 68.60 2.03 45.71 16 9 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 10 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 11 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 12 C 0.39 17.14 7.37 133.07 0.98 18.12 16 13 C -0.25 -10.76 9.19 22.50 0.21 -10.55 16 14 C -0.02 -0.68 9.85 22.44 0.22 -0.46 16 15 C -0.21 -6.04 5.41 -19.76 -0.11 -6.14 16 16 C 0.13 2.51 6.93 85.56 0.59 3.11 16 17 N -0.86 -15.63 9.61 -190.02 -1.83 -17.45 16 18 C 0.14 4.32 10.85 84.62 0.92 5.24 16 19 N -0.57 -21.79 9.16 -193.26 -1.77 -23.56 16 20 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 21 H 0.07 2.59 7.45 -2.39 -0.02 2.57 16 22 H 0.06 2.32 8.07 -2.39 -0.02 2.30 16 23 H 0.02 0.98 8.07 -2.39 -0.02 0.96 16 24 H 0.02 0.91 6.37 -2.39 -0.02 0.89 16 25 H 0.27 14.69 8.31 -92.71 -0.77 13.92 16 26 H 0.11 5.41 6.22 -2.91 -0.02 5.39 16 27 H 0.14 4.17 8.06 -2.91 -0.02 4.15 16 28 H 0.08 1.52 8.09 -2.39 -0.02 1.50 16 29 H 0.05 0.83 8.09 -2.38 -0.02 0.81 16 30 H 0.35 4.55 9.08 -89.70 -0.81 3.74 16 31 H 0.34 5.93 8.99 -89.69 -0.81 5.13 16 32 H 0.18 3.84 8.06 -2.91 -0.02 3.81 16 Total: -1.00 -64.19 276.32 1.30 -62.89 By element: Atomic # 1 Polarization: 16.02 SS G_CDS: -0.49 Total: 15.54 kcal Atomic # 6 Polarization: -4.54 SS G_CDS: 5.26 Total: 0.71 kcal Atomic # 7 Polarization: -119.35 SS G_CDS: -5.49 Total: -124.85 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Total: -64.19 1.30 -62.89 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723198629.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.073 kcal (2) G-P(sol) polarization free energy of solvation -64.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.889 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds