Wall clock time and date at job start Mon Mar 30 2020 02:29:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46508 * 109.47204 * 2 1 4 4 N 1.40127 * 126.48761 * 270.00148 * 3 2 1 5 5 N 1.28667 * 108.93227 * 179.72022 * 4 3 2 6 6 C 1.34845 * 109.63580 * 0.44755 * 5 4 3 7 7 C 1.41488 * 126.02048 * 179.81369 * 6 5 4 8 8 H 1.08002 * 120.00209 * 179.69551 * 7 6 5 9 9 C 1.39745 * 120.00140 * 359.41233 * 7 6 5 10 10 N 1.30984 * 119.99717 * 0.27930 * 9 7 6 11 11 Si 1.86794 * 119.99944 * 180.27366 * 9 7 6 12 12 H 1.48496 * 109.47341 * 0.02562 * 11 9 7 13 13 H 1.48510 * 109.46748 * 120.00674 * 11 9 7 14 14 H 1.48498 * 109.47206 * 240.00350 * 11 9 7 15 15 C 1.35009 * 126.49594 * 89.99646 * 3 2 1 16 16 C 1.50703 * 126.77324 * 0.04075 * 15 3 2 17 17 C 1.52998 * 109.47275 * 89.97808 * 16 15 3 18 18 C 1.52994 * 117.49901 * 243.74705 * 17 16 15 19 19 C 1.52997 * 117.49665 * 175.08761 * 17 16 15 20 20 H 1.09002 * 109.47276 * 180.02562 * 1 2 3 21 21 H 1.09007 * 109.46940 * 300.00286 * 1 2 3 22 22 H 1.08993 * 109.47168 * 60.00268 * 1 2 3 23 23 H 1.08995 * 109.47326 * 239.99831 * 2 1 3 24 24 H 1.09002 * 109.46994 * 119.99491 * 2 1 3 25 25 H 0.96996 * 120.00078 * 179.97438 * 10 9 7 26 26 H 1.08999 * 109.46881 * 209.98076 * 16 15 3 27 27 H 1.09005 * 109.46614 * 329.97809 * 16 15 3 28 28 H 1.08995 * 115.54719 * 29.42023 * 17 16 15 29 29 H 1.08999 * 117.49754 * 0.02562 * 18 17 16 30 30 H 1.09001 * 117.49830 * 145.02411 * 18 17 16 31 31 H 1.09004 * 117.49484 * 214.97996 * 19 17 16 32 32 H 1.09003 * 117.50244 * 359.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.2961 2.1669 -1.1266 5 7 2.6994 3.3254 -0.7385 6 6 2.7212 3.3697 0.6090 7 6 3.1125 4.4764 1.3990 8 1 3.0878 4.4065 2.4764 9 6 3.5365 5.6580 0.7851 10 7 3.5665 5.7428 -0.5217 11 14 4.0603 7.1165 1.8280 12 1 3.9359 6.7670 3.2659 13 1 5.4723 7.4613 1.5231 14 1 3.1898 8.2805 1.5240 15 6 2.2859 2.1384 1.0853 16 6 2.1420 1.7291 2.5286 17 6 3.4534 1.1100 3.0163 18 6 3.4277 -0.3618 3.4333 19 6 3.5492 0.7331 4.4960 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 1.8933 -0.5138 -0.8899 24 1 1.8933 -0.5138 0.8900 25 1 3.8605 6.5631 -0.9479 26 1 1.9069 2.6052 3.1329 27 1 1.3388 0.9980 2.6205 28 1 4.3568 1.4802 2.5317 29 1 2.4766 -0.8892 3.3596 30 1 4.3144 -0.9599 3.2233 31 1 4.5159 0.8548 4.9848 32 1 2.6782 0.9265 5.1222 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958545392.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:26 Heat of formation + Delta-G solvation = 100.031092 kcal Electronic energy + Delta-G solvation = -15053.994407 eV Core-core repulsion = 12630.990060 eV Total energy + Delta-G solvation = -2423.004346 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.96701 -37.04485 -34.35697 -33.01590 -30.91068 -29.12873 -27.06969 -24.56723 -23.23620 -22.12595 -20.48673 -20.15239 -18.85475 -17.07537 -15.64711 -14.88485 -14.65808 -14.40106 -13.96150 -13.60879 -13.08639 -12.71996 -12.31252 -11.98748 -11.66810 -11.31461 -11.15109 -11.12941 -11.01362 -10.88301 -10.69605 -10.23852 -10.03903 -9.62349 -9.47041 -9.25091 -8.78596 -8.36146 -7.34003 -6.31331 -4.10141 2.87215 3.18849 3.24016 3.28036 3.71112 4.14579 4.18101 4.36686 5.09646 5.15877 5.26574 5.28505 5.43892 5.57282 5.60662 5.76230 5.81335 5.86918 5.98604 6.07186 6.15182 6.31774 6.33531 6.37905 6.49030 6.76581 7.00780 7.21126 7.48611 7.58662 8.24253 8.49595 8.89346 9.14937 10.28355 10.65666 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.023939 B = 0.010598 C = 0.007831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.381652 B = 2641.451972 C = 3574.734686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.133 3.867 3 N -0.374 5.374 4 N -0.136 5.136 5 N -0.231 5.231 6 C 0.153 3.847 7 C -0.449 4.449 8 H 0.081 0.919 9 C 0.072 3.928 10 N -0.777 5.777 11 Si 0.904 3.096 12 H -0.264 1.264 13 H -0.278 1.278 14 H -0.278 1.278 15 C -0.109 4.109 16 C 0.016 3.984 17 C -0.130 4.130 18 C -0.191 4.191 19 C -0.185 4.185 20 H 0.065 0.935 21 H 0.058 0.942 22 H 0.061 0.939 23 H 0.081 0.919 24 H 0.079 0.921 25 H 0.270 0.730 26 H 0.082 0.918 27 H 0.051 0.949 28 H 0.107 0.893 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.399 -9.166 7.148 11.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.009 3.991 3 N -0.170 5.170 4 N -0.112 5.112 5 N -0.102 5.102 6 C 0.023 3.977 7 C -0.485 4.485 8 H 0.099 0.901 9 C -0.146 4.146 10 N -0.404 5.404 11 Si 0.730 3.270 12 H -0.188 1.188 13 H -0.203 1.203 14 H -0.203 1.203 15 C -0.240 4.240 16 C -0.024 4.024 17 C -0.149 4.149 18 C -0.228 4.228 19 C -0.222 4.222 20 H 0.083 0.917 21 H 0.077 0.923 22 H 0.081 0.919 23 H 0.099 0.901 24 H 0.097 0.903 25 H 0.081 0.919 26 H 0.100 0.900 27 H 0.070 0.930 28 H 0.125 0.875 29 H 0.106 0.894 30 H 0.105 0.895 31 H 0.107 0.893 32 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.337 -8.986 5.367 10.724 hybrid contribution 0.244 0.485 1.528 1.621 sum -2.093 -8.501 6.895 11.144 Atomic orbital electron populations 1.22157 0.95517 1.01700 1.03032 1.21307 0.94329 0.80586 1.02849 1.49512 1.50157 1.11207 1.06147 1.81478 1.22338 0.99340 1.08014 1.75088 1.14562 1.08326 1.12271 1.18999 0.98545 0.92008 0.88196 1.18557 1.41756 0.94926 0.93282 0.90082 1.25779 0.94390 0.99510 0.94948 1.70032 1.34851 1.26441 1.09087 0.86334 0.78543 0.81291 0.80867 1.18755 1.20324 1.20318 1.21269 1.19078 0.94735 0.88940 1.19164 0.93597 0.99420 0.90168 1.22471 1.00899 0.95733 0.95832 1.23015 1.02292 0.92285 1.05191 1.22929 1.02556 1.04171 0.92521 0.91658 0.92292 0.91942 0.90054 0.90251 0.91918 0.89995 0.93045 0.87514 0.89391 0.89532 0.89284 0.89116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.31 10.24 37.16 0.38 -1.93 16 2 C 0.13 2.16 6.87 -4.04 -0.03 2.13 16 3 N -0.37 -8.35 3.63 -56.17 -0.20 -8.56 16 4 N -0.14 -3.63 13.74 60.35 0.83 -2.80 16 5 N -0.23 -6.85 10.56 32.05 0.34 -6.51 16 6 C 0.15 4.26 6.72 -85.02 -0.57 3.69 16 7 C -0.45 -12.33 9.11 -37.78 -0.34 -12.68 16 8 H 0.08 2.07 7.30 -52.49 -0.38 1.69 16 9 C 0.07 1.95 5.49 -17.35 -0.10 1.86 16 10 N -0.78 -22.40 11.92 55.54 0.66 -21.74 16 11 Si 0.90 19.86 29.56 -169.99 -5.02 14.83 16 12 H -0.26 -5.59 7.11 56.52 0.40 -5.19 16 13 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 14 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 15 C -0.11 -2.53 6.32 -80.91 -0.51 -3.04 16 16 C 0.02 0.30 5.36 -27.88 -0.15 0.15 16 17 C -0.13 -2.16 5.72 -90.62 -0.52 -2.68 16 18 C -0.19 -2.53 10.18 -26.70 -0.27 -2.81 16 19 C -0.18 -2.47 10.25 -26.70 -0.27 -2.75 16 20 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 21 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 22 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 23 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 24 H 0.08 1.13 7.78 -51.93 -0.40 0.72 16 25 H 0.27 7.14 8.30 -40.82 -0.34 6.80 16 26 H 0.08 1.54 7.56 -51.93 -0.39 1.14 16 27 H 0.05 0.83 7.58 -51.93 -0.39 0.43 16 28 H 0.11 2.04 8.07 -51.93 -0.42 1.62 16 29 H 0.09 1.06 8.03 -51.93 -0.42 0.64 16 30 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 LS Contribution 278.60 15.07 4.20 4.20 Total: -1.00 -31.89 278.60 -6.09 -37.97 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: -4.50 Total: 0.67 kcal Atomic # 6 Polarization: -15.68 SS G_CDS: -2.38 Total: -18.06 kcal Atomic # 7 Polarization: -41.24 SS G_CDS: 1.63 Total: -39.61 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -5.02 Total: 14.83 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -31.89 -6.09 -37.97 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958545392.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.003 kcal (2) G-P(sol) polarization free energy of solvation -31.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.972 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds