Wall clock time and date at job start Mon Mar 30 2020 02:29:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46508 * 109.47204 * 2 1 4 4 N 1.40127 * 126.48761 * 270.00148 * 3 2 1 5 5 N 1.28667 * 108.93227 * 179.72022 * 4 3 2 6 6 C 1.34845 * 109.63580 * 0.44755 * 5 4 3 7 7 C 1.41488 * 126.02048 * 179.81369 * 6 5 4 8 8 H 1.08002 * 120.00209 * 179.69551 * 7 6 5 9 9 C 1.39745 * 120.00140 * 359.41233 * 7 6 5 10 10 N 1.30984 * 119.99717 * 0.27930 * 9 7 6 11 11 Si 1.86794 * 119.99944 * 180.27366 * 9 7 6 12 12 H 1.48496 * 109.47341 * 0.02562 * 11 9 7 13 13 H 1.48510 * 109.46748 * 120.00674 * 11 9 7 14 14 H 1.48498 * 109.47206 * 240.00350 * 11 9 7 15 15 C 1.35009 * 126.49594 * 89.99646 * 3 2 1 16 16 C 1.50703 * 126.77324 * 0.04075 * 15 3 2 17 17 C 1.52998 * 109.47275 * 89.97808 * 16 15 3 18 18 C 1.52994 * 117.49901 * 243.74705 * 17 16 15 19 19 C 1.52997 * 117.49665 * 175.08761 * 17 16 15 20 20 H 1.09002 * 109.47276 * 180.02562 * 1 2 3 21 21 H 1.09007 * 109.46940 * 300.00286 * 1 2 3 22 22 H 1.08993 * 109.47168 * 60.00268 * 1 2 3 23 23 H 1.08995 * 109.47326 * 239.99831 * 2 1 3 24 24 H 1.09002 * 109.46994 * 119.99491 * 2 1 3 25 25 H 0.96996 * 120.00078 * 179.97438 * 10 9 7 26 26 H 1.08999 * 109.46881 * 209.98076 * 16 15 3 27 27 H 1.09005 * 109.46614 * 329.97809 * 16 15 3 28 28 H 1.08995 * 115.54719 * 29.42023 * 17 16 15 29 29 H 1.08999 * 117.49754 * 0.02562 * 18 17 16 30 30 H 1.09001 * 117.49830 * 145.02411 * 18 17 16 31 31 H 1.09004 * 117.49484 * 214.97996 * 19 17 16 32 32 H 1.09003 * 117.50244 * 359.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.2961 2.1669 -1.1266 5 7 2.6994 3.3254 -0.7385 6 6 2.7212 3.3697 0.6090 7 6 3.1125 4.4764 1.3990 8 1 3.0878 4.4065 2.4764 9 6 3.5365 5.6580 0.7851 10 7 3.5665 5.7428 -0.5217 11 14 4.0603 7.1165 1.8280 12 1 3.9359 6.7670 3.2659 13 1 5.4723 7.4613 1.5231 14 1 3.1898 8.2805 1.5240 15 6 2.2859 2.1384 1.0853 16 6 2.1420 1.7291 2.5286 17 6 3.4534 1.1100 3.0163 18 6 3.4277 -0.3618 3.4333 19 6 3.5492 0.7331 4.4960 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 1.8933 -0.5138 -0.8899 24 1 1.8933 -0.5138 0.8900 25 1 3.8605 6.5631 -0.9479 26 1 1.9069 2.6052 3.1329 27 1 1.3388 0.9980 2.6205 28 1 4.3568 1.4802 2.5317 29 1 2.4766 -0.8892 3.3596 30 1 4.3144 -0.9599 3.2233 31 1 4.5159 0.8548 4.9848 32 1 2.6782 0.9265 5.1222 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958545392.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:25 Heat of formation + Delta-G solvation = 79.325436 kcal Electronic energy + Delta-G solvation = -15054.892271 eV Core-core repulsion = 12630.990060 eV Total energy + Delta-G solvation = -2423.902211 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.87149 -38.27679 -36.02657 -34.89291 -32.59446 -30.82255 -28.77044 -26.47779 -24.73363 -23.16010 -22.17841 -21.76579 -20.50343 -18.98124 -17.15202 -16.74873 -16.15388 -15.98099 -15.36736 -14.88638 -14.74744 -14.44115 -13.69459 -13.49438 -13.10525 -12.85812 -12.82164 -12.59988 -12.37749 -12.27409 -12.20220 -11.98876 -11.59812 -11.18595 -11.17567 -10.77347 -10.62726 -10.21462 -9.33024 -8.28072 -6.15917 1.02825 1.43560 1.43756 1.59544 2.06575 2.34943 2.35264 3.01575 3.53541 3.87783 3.89342 4.06982 4.16082 4.18343 4.30588 4.41011 4.56986 4.72879 4.76146 4.85427 4.88996 4.99128 5.08308 5.15463 5.22944 5.30155 5.35694 5.46165 5.56111 5.67689 6.43028 6.50070 6.92513 7.12100 8.32194 8.72026 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.023939 B = 0.010598 C = 0.007831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.381652 B = 2641.451972 C = 3574.734686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.115 3.885 3 N -0.357 5.357 4 N -0.181 5.181 5 N -0.286 5.286 6 C 0.102 3.898 7 C -0.476 4.476 8 H 0.091 0.909 9 C 0.018 3.982 10 N -0.831 5.831 11 Si 0.984 3.016 12 H -0.248 1.248 13 H -0.275 1.275 14 H -0.274 1.274 15 C -0.071 4.071 16 C 0.020 3.980 17 C -0.164 4.164 18 C -0.169 4.169 19 C -0.166 4.166 20 H 0.111 0.889 21 H 0.056 0.944 22 H 0.039 0.961 23 H 0.093 0.907 24 H 0.112 0.888 25 H 0.271 0.729 26 H 0.076 0.924 27 H 0.085 0.915 28 H 0.070 0.930 29 H 0.111 0.889 30 H 0.095 0.905 31 H 0.097 0.903 32 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.137 -11.392 10.033 15.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.006 4.006 3 N -0.151 5.151 4 N -0.155 5.155 5 N -0.155 5.155 6 C -0.031 4.031 7 C -0.513 4.513 8 H 0.109 0.891 9 C -0.195 4.195 10 N -0.459 5.459 11 Si 0.806 3.194 12 H -0.171 1.171 13 H -0.201 1.201 14 H -0.199 1.199 15 C -0.207 4.207 16 C -0.020 4.020 17 C -0.183 4.183 18 C -0.206 4.206 19 C -0.203 4.203 20 H 0.130 0.870 21 H 0.075 0.925 22 H 0.059 0.941 23 H 0.112 0.888 24 H 0.130 0.870 25 H 0.081 0.919 26 H 0.095 0.905 27 H 0.104 0.896 28 H 0.089 0.911 29 H 0.129 0.871 30 H 0.113 0.887 31 H 0.115 0.885 32 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -3.099 -11.276 8.209 14.288 hybrid contribution 0.396 0.889 0.710 1.205 sum -2.703 -10.387 8.919 13.955 Atomic orbital electron populations 1.22107 0.93212 1.04354 1.01828 1.21951 0.96174 0.77340 1.05098 1.50045 1.47220 1.12854 1.05032 1.81342 1.25177 0.99615 1.09406 1.75024 1.16820 1.09997 1.13666 1.19627 1.00855 0.94318 0.88338 1.18904 1.42870 0.95756 0.93762 0.89114 1.26769 0.94094 1.02568 0.96105 1.70201 1.37107 1.27362 1.11273 0.85130 0.77875 0.76965 0.79470 1.17116 1.20053 1.19938 1.22106 1.13990 0.93245 0.91354 1.19311 0.95936 1.00344 0.86363 1.22111 0.98169 0.99092 0.98952 1.23157 1.03923 0.90410 1.03062 1.23045 1.03873 1.02685 0.90707 0.87024 0.92534 0.94132 0.88840 0.87018 0.91940 0.90541 0.89625 0.91144 0.87071 0.88659 0.88454 0.87349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.86 10.24 71.98 0.74 -3.12 16 2 C 0.12 3.40 6.87 86.38 0.59 4.00 16 3 N -0.36 -15.80 3.63 -331.63 -1.20 -17.00 16 4 N -0.18 -10.02 13.74 37.02 0.51 -9.51 16 5 N -0.29 -17.92 10.56 -52.52 -0.55 -18.47 16 6 C 0.10 5.90 6.72 39.67 0.27 6.17 16 7 C -0.48 -27.06 9.11 23.44 0.21 -26.85 16 8 H 0.09 4.73 7.30 -2.91 -0.02 4.71 16 9 C 0.02 0.99 5.49 85.18 0.47 1.45 16 10 N -0.83 -50.55 11.92 21.80 0.26 -50.29 16 11 Si 0.98 41.93 29.56 68.60 2.03 43.96 16 12 H -0.25 -9.78 7.11 99.48 0.71 -9.07 16 13 H -0.28 -11.46 7.11 99.48 0.71 -10.75 16 14 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 15 C -0.07 -3.30 6.32 42.26 0.27 -3.03 16 16 C 0.02 0.68 5.36 29.85 0.16 0.84 16 17 C -0.16 -5.04 5.72 -10.80 -0.06 -5.11 16 18 C -0.17 -3.69 10.18 30.62 0.31 -3.38 16 19 C -0.17 -3.77 10.25 30.62 0.31 -3.46 16 20 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 21 H 0.06 1.43 8.14 -2.38 -0.02 1.41 16 22 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 23 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 24 H 0.11 2.63 7.78 -2.39 -0.02 2.61 16 25 H 0.27 15.17 8.30 -92.71 -0.77 14.40 16 26 H 0.08 2.73 7.56 -2.39 -0.02 2.72 16 27 H 0.09 2.36 7.58 -2.38 -0.02 2.34 16 28 H 0.07 2.69 8.07 -2.39 -0.02 2.67 16 29 H 0.11 1.96 8.03 -2.39 -0.02 1.94 16 30 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 Total: -1.00 -75.35 278.60 5.41 -69.94 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: 1.10 Total: 13.86 kcal Atomic # 6 Polarization: -35.75 SS G_CDS: 3.27 Total: -32.48 kcal Atomic # 7 Polarization: -94.29 SS G_CDS: -0.99 Total: -95.28 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 2.03 Total: 43.96 kcal Total: -75.35 5.41 -69.94 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958545392.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.264 kcal (2) G-P(sol) polarization free energy of solvation -75.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.938 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds