Wall clock time and date at job start Mon Mar 30 2020 02:54:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30507 * 1 3 3 Si 1.86792 * 120.00302 * 2 1 4 4 H 1.48506 * 109.47230 * 274.98618 * 3 2 1 5 5 H 1.48501 * 109.47198 * 34.98247 * 3 2 1 6 6 H 1.48502 * 109.47447 * 154.98403 * 3 2 1 7 7 C 1.40376 * 119.99614 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99986 * 173.79946 * 7 2 1 9 9 C 1.41471 * 120.00297 * 354.07363 * 7 2 1 10 10 O 1.22053 * 119.99545 * 6.03795 * 9 7 2 11 11 C 1.46529 * 120.00097 * 186.03055 * 9 7 2 12 12 C 1.36754 * 125.42943 * 180.02562 * 11 9 7 13 13 C 1.38696 * 113.93130 * 179.97438 * 12 11 9 14 14 C 1.34989 * 114.02469 * 0.02562 * 13 12 11 15 15 S 1.71462 * 111.11405 * 359.72826 * 14 13 12 16 16 C 1.52364 * 110.28688 * 179.97438 * 14 13 12 17 17 C 1.54147 * 104.93137 * 342.41764 * 16 14 13 18 18 C 1.52807 * 136.25376 * 180.02562 * 13 12 11 19 19 H 0.97005 * 119.99937 * 0.02562 * 1 2 3 20 20 H 1.08005 * 123.03880 * 359.97438 * 12 11 9 21 21 H 1.09003 * 110.35055 * 223.55030 * 16 14 13 22 22 H 1.08995 * 110.43676 * 101.32484 * 16 14 13 23 23 H 1.09001 * 110.94114 * 268.67749 * 17 16 14 24 24 H 1.08988 * 110.97945 * 144.98807 * 17 16 14 25 25 H 1.09003 * 110.32561 * 316.52043 * 18 13 12 26 26 H 1.08996 * 110.32968 * 78.63396 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3051 0.0000 0.0000 3 14 2.2391 1.6176 0.0000 4 1 2.3813 2.1072 -1.3948 5 1 1.4932 2.6199 0.8027 6 1 3.5854 1.4119 0.5920 7 6 2.0069 -1.2157 0.0005 8 1 3.0822 -1.2186 -0.1005 9 6 1.3052 -2.4376 0.1276 10 8 0.0846 -2.4433 0.1258 11 6 2.0436 -3.6961 0.2611 12 6 1.4807 -4.9358 0.3898 13 6 2.4045 -5.9645 0.4991 14 6 3.6902 -5.5553 0.4591 15 16 3.7912 -3.8536 0.2742 16 6 4.6287 -6.7488 0.5863 17 6 3.7538 -7.8831 1.1555 18 6 2.3515 -7.4835 0.6574 19 1 -0.4850 0.8401 -0.0004 20 1 0.4132 -5.0990 0.4049 21 1 5.4441 -6.5184 1.2720 22 1 5.0234 -7.0283 -0.3905 23 1 3.7913 -7.8948 2.2448 24 1 4.0522 -8.8485 0.7469 25 1 1.5957 -7.7615 1.3919 26 1 2.1392 -7.9569 -0.3011 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019471935.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:12 Heat of formation + Delta-G solvation = -40.949691 kcal Electronic energy + Delta-G solvation = -12335.253499 eV Core-core repulsion = 10083.044131 eV Total energy + Delta-G solvation = -2252.209369 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 222.046 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.21707 -38.75302 -35.18374 -34.61814 -30.13956 -29.26415 -28.01265 -24.50368 -22.57732 -21.17710 -19.20879 -18.98229 -17.75343 -16.84289 -16.46778 -15.74097 -15.16518 -14.82722 -14.60153 -13.71337 -13.52127 -13.40644 -12.97266 -12.88503 -12.74735 -12.61357 -12.48614 -12.06014 -11.99202 -11.57898 -11.54711 -11.04878 -9.81663 -9.36750 -9.10487 -8.46822 -7.19469 -0.15212 0.71513 1.31191 1.32091 1.35309 1.53893 1.60638 2.17180 2.35685 3.50175 3.63906 3.69758 4.19771 4.22617 4.50138 4.58215 4.75089 4.86298 4.96391 5.01714 5.07675 5.11542 5.22839 5.37842 5.50188 5.62697 5.81878 6.58205 6.65086 8.10267 8.38203 Molecular weight = 222.05amu Principal moments of inertia in cm(-1) A = 0.056936 B = 0.007627 C = 0.006790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.659359 B = 3670.483407 C = 4122.679613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.782 5.782 2 C 0.023 3.977 3 Si 0.998 3.002 4 H -0.255 1.255 5 H -0.264 1.264 6 H -0.244 1.244 7 C -0.538 4.538 8 H 0.091 0.909 9 C 0.388 3.612 10 O -0.595 6.595 11 C -0.258 4.258 12 C -0.115 4.115 13 C -0.153 4.153 14 C -0.260 4.260 15 S 0.230 5.770 16 C -0.036 4.036 17 C -0.106 4.106 18 C -0.056 4.056 19 H 0.286 0.714 20 H 0.115 0.885 21 H 0.088 0.912 22 H 0.095 0.905 23 H 0.078 0.922 24 H 0.110 0.890 25 H 0.074 0.926 26 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.695 -9.904 1.400 15.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C -0.196 4.196 3 Si 0.815 3.185 4 H -0.179 1.179 5 H -0.188 1.188 6 H -0.167 1.167 7 C -0.569 4.569 8 H 0.109 0.891 9 C 0.287 3.713 10 O -0.490 6.490 11 C -0.376 4.376 12 C -0.147 4.147 13 C -0.166 4.166 14 C -0.379 4.379 15 S 0.500 5.500 16 C -0.075 4.075 17 C -0.145 4.145 18 C -0.095 4.095 19 H 0.097 0.903 20 H 0.133 0.867 21 H 0.106 0.894 22 H 0.113 0.887 23 H 0.097 0.903 24 H 0.129 0.871 25 H 0.092 0.908 26 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 12.166 -8.827 1.285 15.086 hybrid contribution -1.678 -0.061 0.017 1.680 sum 10.488 -8.888 1.302 13.809 Atomic orbital electron populations 1.70083 1.10092 1.30300 1.30572 1.27318 0.95565 1.05676 0.91066 0.85008 0.79272 0.74274 0.79977 1.17888 1.18785 1.16682 1.21290 0.96100 0.92339 1.47168 0.89095 1.17872 0.87992 0.86649 0.78745 1.90522 1.16585 1.88694 1.53221 1.26149 0.98840 1.00281 1.12372 1.20392 1.00060 0.91111 1.03105 1.20700 0.91944 0.98121 1.05806 1.26411 1.01286 1.00188 1.10054 1.82268 1.01563 0.98082 1.68107 1.20954 0.95752 0.88025 1.02788 1.22302 0.92197 0.98539 1.01433 1.21091 0.99529 0.86642 1.02204 0.90335 0.86685 0.89353 0.88693 0.90287 0.87148 0.90755 0.89617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -47.04 11.75 21.89 0.26 -46.79 15 2 C 0.02 1.29 5.49 85.41 0.47 1.76 15 3 Si 1.00 39.47 29.57 68.60 2.03 41.49 15 4 H -0.25 -9.49 7.11 99.48 0.71 -8.78 15 5 H -0.26 -9.89 7.11 99.48 0.71 -9.18 15 6 H -0.24 -8.98 7.11 99.48 0.71 -8.28 15 7 C -0.54 -31.12 8.99 23.59 0.21 -30.91 15 8 H 0.09 4.72 7.11 -2.91 -0.02 4.70 15 9 C 0.39 24.07 6.88 25.23 0.17 24.24 15 10 O -0.59 -41.85 15.40 -5.49 -0.08 -41.93 15 11 C -0.26 -13.33 6.39 24.09 0.15 -13.17 15 12 C -0.12 -5.45 10.02 22.03 0.22 -5.23 15 13 C -0.15 -5.64 6.49 -19.82 -0.13 -5.77 15 14 C -0.26 -8.74 7.11 25.47 0.18 -8.55 15 15 S 0.23 9.08 22.02 -56.49 -1.24 7.84 15 16 C -0.04 -0.79 6.80 30.77 0.21 -0.58 15 17 C -0.11 -1.94 7.10 31.35 0.22 -1.72 15 18 C -0.06 -1.41 6.81 30.90 0.21 -1.20 15 19 H 0.29 15.19 8.29 -92.70 -0.77 14.42 15 20 H 0.12 5.70 8.05 -2.91 -0.02 5.67 15 21 H 0.09 1.64 8.14 -2.39 -0.02 1.62 15 22 H 0.09 1.76 8.14 -2.39 -0.02 1.74 15 23 H 0.08 1.35 8.14 -2.39 -0.02 1.33 15 24 H 0.11 1.31 8.14 -2.39 -0.02 1.29 15 25 H 0.07 1.78 8.14 -2.39 -0.02 1.77 15 26 H 0.09 1.95 8.14 -2.39 -0.02 1.93 15 Total: -1.00 -76.33 244.45 4.07 -72.25 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: 1.19 Total: 8.25 kcal Atomic # 6 Polarization: -43.04 SS G_CDS: 1.92 Total: -41.11 kcal Atomic # 7 Polarization: -47.04 SS G_CDS: 0.26 Total: -46.79 kcal Atomic # 8 Polarization: -41.85 SS G_CDS: -0.08 Total: -41.93 kcal Atomic # 14 Polarization: 39.47 SS G_CDS: 2.03 Total: 41.49 kcal Atomic # 16 Polarization: 9.08 SS G_CDS: -1.24 Total: 7.84 kcal Total: -76.33 4.07 -72.25 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019471935.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.303 kcal (2) G-P(sol) polarization free energy of solvation -76.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds