Wall clock time and date at job start Mon Mar 30 2020 02:45:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31006 * 1 3 3 Si 1.86803 * 119.99916 * 2 1 4 4 H 1.48500 * 109.46890 * 240.00181 * 3 2 1 5 5 H 1.48501 * 109.46995 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47408 * 119.99721 * 3 2 1 7 7 C 1.39777 * 120.00253 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99885 * 179.97438 * 7 2 1 9 9 C 1.40953 * 119.99946 * 0.02562 * 7 2 1 10 10 C 1.38656 * 127.30878 * 359.96796 * 9 7 2 11 11 O 1.33933 * 109.32496 * 180.02562 * 10 9 7 12 12 C 1.34992 * 111.57183 * 359.97438 * 11 10 9 13 13 C 1.40179 * 108.10577 * 0.02562 * 12 11 10 14 14 C 1.39037 * 120.35077 * 179.97438 * 13 12 11 15 15 C 1.37978 * 119.67452 * 359.78939 * 14 13 12 16 16 C 1.38567 * 120.16291 * 0.46553 * 15 14 13 17 17 C 1.38064 * 120.62884 * 359.50832 * 16 15 14 18 18 Cl 1.73605 * 120.00272 * 180.23511 * 17 16 15 19 19 H 0.97001 * 120.00198 * 0.02562 * 1 2 3 20 20 H 1.07993 * 125.33917 * 0.02580 * 10 9 7 21 21 H 1.08000 * 120.16275 * 179.97438 * 14 13 12 22 22 H 1.07999 * 119.92114 * 180.22983 * 15 14 13 23 23 H 1.08002 * 119.68792 * 179.78954 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 14 2.2440 1.6178 0.0000 4 1 3.0977 1.6964 -1.2125 5 1 1.2790 2.7465 -0.0006 6 1 3.0978 1.6965 1.2125 7 6 2.0090 -1.2105 0.0005 8 1 3.0890 -1.2104 0.0001 9 6 1.3043 -2.4312 0.0005 10 6 -0.0710 -2.6076 0.0007 11 8 -0.3498 -3.9176 0.0012 12 6 0.7748 -4.6644 0.0009 13 6 1.8747 -3.7954 0.0007 14 6 3.1698 -4.3014 0.0009 15 6 3.3697 -5.6666 0.0057 16 6 2.2853 -6.5292 0.0005 17 6 0.9953 -6.0373 0.0008 18 17 -0.3515 -7.1327 0.0004 19 1 -0.4850 0.8400 -0.0004 20 1 -0.8027 -1.8133 0.0004 21 1 4.0150 -3.6291 0.0003 22 1 4.3740 -6.0640 0.0096 23 1 2.4507 -7.5964 0.0009 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000034371855.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:00 Heat of formation + Delta-G solvation = -13.169174 kcal Electronic energy + Delta-G solvation = -12320.672139 eV Core-core repulsion = 9931.790623 eV Total energy + Delta-G solvation = -2388.881516 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 222.019 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.57409 -38.65754 -37.28571 -35.97573 -32.88486 -30.94447 -29.91540 -27.40648 -23.91649 -22.91110 -21.95738 -19.26469 -17.95446 -17.29988 -16.61278 -16.57404 -16.34142 -15.41750 -14.78964 -14.33265 -13.74773 -13.64803 -13.23345 -13.02299 -12.80007 -12.38350 -12.26326 -12.00875 -11.80465 -11.58455 -11.48640 -10.34691 -9.33960 -8.89047 -8.62546 -6.35209 0.08415 0.53358 1.18427 1.35337 1.40488 1.53524 1.99030 2.20549 2.46030 2.73865 3.35775 4.02302 4.04561 4.34830 4.42758 4.55507 4.91371 5.05520 5.26043 5.36460 5.46035 5.59563 5.87301 5.99081 6.33696 6.59280 6.86916 7.07201 8.39292 Molecular weight = 222.02amu Principal moments of inertia in cm(-1) A = 0.049476 B = 0.008295 C = 0.007121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.797469 B = 3374.903053 C = 3930.858000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.849 5.849 2 C 0.012 3.988 3 Si 1.002 2.998 4 H -0.260 1.260 5 H -0.270 1.270 6 H -0.260 1.260 7 C -0.451 4.451 8 H 0.083 0.917 9 C -0.022 4.022 10 C -0.197 4.197 11 O -0.216 6.216 12 C 0.027 3.973 13 C -0.163 4.163 14 C -0.070 4.070 15 C -0.140 4.140 16 C -0.084 4.084 17 C -0.057 4.057 18 Cl -0.074 7.074 19 H 0.289 0.711 20 H 0.215 0.785 21 H 0.135 0.865 22 H 0.175 0.825 23 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.547 -6.855 0.006 8.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C -0.198 4.198 3 Si 0.823 3.177 4 H -0.184 1.184 5 H -0.194 1.194 6 H -0.184 1.184 7 C -0.481 4.481 8 H 0.101 0.899 9 C -0.024 4.024 10 C -0.262 4.262 11 O -0.119 6.119 12 C -0.022 4.022 13 C -0.165 4.165 14 C -0.088 4.088 15 C -0.158 4.158 16 C -0.102 4.102 17 C -0.084 4.084 18 Cl -0.045 7.045 19 H 0.100 0.900 20 H 0.231 0.769 21 H 0.153 0.847 22 H 0.193 0.807 23 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 4.972 -6.887 0.007 8.494 hybrid contribution -0.310 0.928 -0.003 0.979 sum 4.662 -5.959 0.004 7.566 Atomic orbital electron populations 1.69356 1.08917 1.30295 1.39344 1.26789 0.95783 1.04699 0.92503 0.84922 0.78200 0.74703 0.79905 1.18423 1.19404 1.18411 1.19079 0.94720 0.89573 1.44736 0.89909 1.19221 0.91977 0.91205 1.00046 1.25464 0.98345 0.79239 1.23171 1.83681 1.31838 1.19041 1.77312 1.19741 0.86220 0.92153 1.04128 1.20472 0.94673 0.93862 1.07501 1.20880 0.94266 0.96585 0.97050 1.21247 1.00136 0.91105 1.03278 1.21114 0.87978 1.01963 0.99187 1.19970 0.90413 0.84569 1.13475 1.98304 1.46355 1.62492 1.97348 0.89986 0.76906 0.84670 0.80748 0.81013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -44.71 10.38 21.81 0.23 -44.49 14 2 C 0.01 0.59 5.49 85.19 0.47 1.05 14 3 Si 1.00 38.26 29.56 68.60 2.03 40.29 14 4 H -0.26 -9.57 7.11 99.48 0.71 -8.86 14 5 H -0.27 -9.80 7.11 99.48 0.71 -9.09 14 6 H -0.26 -9.56 7.11 99.48 0.71 -8.85 14 7 C -0.45 -24.40 9.44 23.31 0.22 -24.18 14 8 H 0.08 4.18 7.84 -2.91 -0.02 4.15 14 9 C -0.02 -1.23 6.13 -19.96 -0.12 -1.36 14 10 C -0.20 -11.26 11.08 67.92 0.75 -10.51 14 11 O -0.22 -11.72 10.52 -5.86 -0.06 -11.78 14 12 C 0.03 1.33 7.15 22.94 0.16 1.50 14 13 C -0.16 -8.04 6.36 -20.06 -0.13 -8.17 14 14 C -0.07 -2.69 10.09 22.40 0.23 -2.46 14 15 C -0.14 -4.13 10.04 22.29 0.22 -3.91 14 16 C -0.08 -2.56 9.79 22.31 0.22 -2.35 14 17 C -0.06 -2.23 6.33 22.42 0.14 -2.08 14 18 Cl -0.07 -2.54 28.96 -2.72 -0.08 -2.62 14 19 H 0.29 13.77 8.30 -92.71 -0.77 13.00 14 20 H 0.22 12.41 5.72 -2.91 -0.02 12.39 14 21 H 0.14 4.71 8.06 -2.91 -0.02 4.68 14 22 H 0.18 3.44 8.06 -2.91 -0.02 3.42 14 23 H 0.17 3.75 8.06 -2.91 -0.02 3.73 14 Total: -1.00 -62.01 228.67 5.52 -56.49 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: 1.24 Total: 14.57 kcal Atomic # 6 Polarization: -54.63 SS G_CDS: 2.16 Total: -52.47 kcal Atomic # 7 Polarization: -44.71 SS G_CDS: 0.23 Total: -44.49 kcal Atomic # 8 Polarization: -11.72 SS G_CDS: -0.06 Total: -11.78 kcal Atomic # 14 Polarization: 38.26 SS G_CDS: 2.03 Total: 40.29 kcal Atomic # 17 Polarization: -2.54 SS G_CDS: -0.08 Total: -2.62 kcal Total: -62.01 5.52 -56.49 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034371855.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.323 kcal (2) G-P(sol) polarization free energy of solvation -62.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds