Wall clock time and date at job start Mon Mar 30 2020 03:04:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30708 * 1 3 3 Si 1.86802 * 119.99851 * 2 1 4 4 H 1.48499 * 109.47506 * 274.98177 * 3 2 1 5 5 H 1.48501 * 109.47123 * 34.98505 * 3 2 1 6 6 H 1.48505 * 109.47001 * 154.98155 * 3 2 1 7 7 C 1.40187 * 120.00410 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00712 * 186.06070 * 7 2 1 9 9 C 1.39768 * 119.99644 * 6.05404 * 7 2 1 10 10 N 1.32813 * 125.42105 * 354.19498 * 9 7 2 11 11 C 1.33087 * 109.51238 * 180.02562 * 10 9 7 12 12 C 1.41371 * 107.94724 * 359.97438 * 11 10 9 13 13 N 1.33172 * 119.41801 * 180.02562 * 12 11 10 14 14 C 1.31366 * 121.88217 * 359.97438 * 13 12 11 15 15 O 1.34849 * 118.54950 * 180.02562 * 14 13 12 16 16 N 1.35908 * 122.90519 * 0.02654 * 14 13 12 17 17 H 0.97003 * 119.82163 * 180.25896 * 16 14 13 18 18 C 1.35301 * 120.35397 * 359.97438 * 16 14 13 19 19 O 1.21780 * 121.20740 * 180.02562 * 18 16 14 20 20 N 1.36864 * 106.31181 * 0.02562 * 12 11 10 21 21 H 0.97005 * 126.46085 * 179.97438 * 20 12 11 22 22 H 0.96995 * 119.99716 * 359.97438 * 1 2 3 23 23 H 0.96698 * 117.00185 * 359.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3071 0.0000 0.0000 3 14 2.2411 1.6178 0.0000 4 1 2.3833 2.1073 -1.3947 5 1 1.4951 2.6200 0.8028 6 1 3.5873 1.4121 0.5921 7 6 2.0081 -1.2140 -0.0005 8 1 3.0835 -1.2167 0.0982 9 6 1.3151 -2.4210 -0.1287 10 7 -0.0064 -2.5517 -0.1470 11 6 -0.3242 -3.8370 -0.2815 12 6 0.8778 -4.5776 -0.3546 13 7 0.8233 -5.9010 -0.4928 14 6 -0.3196 -6.5448 -0.5632 15 8 -0.2963 -7.8859 -0.7024 16 7 -1.5245 -5.9191 -0.5021 17 1 -2.3415 -6.4393 -0.5548 18 6 -1.5905 -4.5749 -0.3622 19 8 -2.6617 -3.9983 -0.3052 20 7 1.8960 -3.6684 -0.2564 21 1 2.8462 -3.8630 -0.2731 22 1 -0.4849 0.8400 0.0004 23 1 0.5727 -8.3080 -0.7439 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000040176451.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:25 Heat of formation + Delta-G solvation = -26.449381 kcal Electronic energy + Delta-G solvation = -14506.940666 eV Core-core repulsion = 11741.359615 eV Total energy + Delta-G solvation = -2765.581051 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 222.054 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.79814 -40.89138 -39.43116 -36.99492 -35.47733 -34.34510 -33.00606 -30.31050 -27.74225 -24.75825 -24.43425 -22.24785 -20.51955 -20.08507 -19.61991 -18.27070 -17.49251 -17.33619 -17.19058 -16.05677 -15.55750 -15.27967 -15.07522 -14.85596 -14.62237 -13.21228 -12.99083 -12.67067 -12.36922 -11.91649 -11.74680 -11.60219 -11.56556 -10.93663 -10.56523 -9.81753 -8.75699 -8.44829 -6.41969 0.21088 0.80840 1.06590 1.47256 1.48108 1.64438 2.04036 2.21943 2.32971 2.84139 2.88680 3.45198 3.68544 3.75902 4.35913 5.06481 5.08479 5.27986 5.43422 5.73693 5.83566 6.14825 6.42870 6.73152 6.89516 6.96957 7.27557 7.89840 8.48360 Molecular weight = 222.05amu Principal moments of inertia in cm(-1) A = 0.054966 B = 0.008121 C = 0.007099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 509.285794 B = 3446.824805 C = 3943.339779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.778 5.778 2 C 0.027 3.973 3 Si 1.006 2.994 4 H -0.265 1.265 5 H -0.275 1.275 6 H -0.244 1.244 7 C -0.470 4.470 8 H 0.113 0.887 9 C 0.370 3.630 10 N -0.519 5.519 11 C -0.121 4.121 12 C 0.186 3.814 13 N -0.548 5.548 14 C 0.551 3.449 15 O -0.447 6.447 16 N -0.603 5.603 17 H 0.433 0.567 18 C 0.573 3.427 19 O -0.562 6.562 20 N -0.588 5.588 21 H 0.425 0.575 22 H 0.282 0.718 23 H 0.453 0.547 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.061 -9.990 -1.195 11.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.403 5.403 2 C -0.194 4.194 3 Si 0.826 3.174 4 H -0.190 1.190 5 H -0.200 1.200 6 H -0.167 1.167 7 C -0.509 4.509 8 H 0.131 0.869 9 C 0.128 3.872 10 N -0.242 5.242 11 C -0.257 4.257 12 C -0.043 4.043 13 N -0.294 5.294 14 C 0.246 3.754 15 O -0.247 6.247 16 N -0.258 5.258 17 H 0.275 0.725 18 C 0.369 3.631 19 O -0.442 6.442 20 N -0.202 5.202 21 H 0.265 0.735 22 H 0.092 0.908 23 H 0.317 0.683 Dipole moment (debyes) X Y Z Total from point charges 3.901 -9.130 -1.112 9.991 hybrid contribution 0.579 -0.149 -0.073 0.602 sum 4.480 -9.279 -1.184 10.372 Atomic orbital electron populations 1.70197 1.09436 1.29863 1.30778 1.26986 0.95558 1.04722 0.92154 0.84842 0.78927 0.74569 0.79111 1.18987 1.19970 1.16689 1.18791 0.95736 0.87403 1.48992 0.86927 1.20658 0.86434 0.84412 0.95722 1.70800 1.11449 1.14150 1.27842 1.21878 0.92282 0.94347 1.17182 1.18080 0.88923 0.87429 1.09909 1.66239 1.23678 1.07969 1.31473 1.18883 0.80175 0.84829 0.91556 1.84154 1.41373 1.10845 1.88376 1.43167 1.09678 1.07245 1.65750 0.72475 1.17082 0.87860 0.80328 0.77813 1.90814 1.32000 1.67754 1.53612 1.42770 1.07755 1.05480 1.64233 0.73499 0.90750 0.68254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -44.20 11.88 21.87 0.26 -43.94 14 2 C 0.03 1.38 5.49 85.33 0.47 1.85 14 3 Si 1.01 37.07 29.57 68.60 2.03 39.10 14 4 H -0.27 -9.49 7.11 99.48 0.71 -8.78 14 5 H -0.27 -9.98 7.11 99.48 0.71 -9.27 14 6 H -0.24 -8.17 7.11 99.48 0.71 -7.47 14 7 C -0.47 -24.08 9.44 23.11 0.22 -23.87 14 8 H 0.11 4.99 7.86 -2.91 -0.02 4.96 14 9 C 0.37 20.16 7.56 133.37 1.01 21.17 14 10 N -0.52 -31.59 9.34 -181.62 -1.70 -33.29 14 11 C -0.12 -6.56 7.44 41.96 0.31 -6.25 14 12 C 0.19 8.55 8.50 134.10 1.14 9.69 14 13 N -0.55 -19.72 10.27 -310.01 -3.18 -22.90 14 14 C 0.55 16.42 8.87 179.73 1.59 18.02 14 15 O -0.45 -7.94 13.48 -81.16 -1.09 -9.03 14 16 N -0.60 -20.28 5.29 -429.11 -2.27 -22.55 14 17 H 0.43 11.19 8.91 -92.71 -0.83 10.36 14 18 C 0.57 27.44 8.00 86.39 0.69 28.13 14 19 O -0.56 -30.63 18.00 -4.60 -0.08 -30.71 14 20 N -0.59 -26.62 6.29 -189.80 -1.19 -27.81 14 21 H 0.43 15.58 8.96 -92.70 -0.83 14.75 14 22 H 0.28 14.60 8.29 -92.71 -0.77 13.84 14 23 H 0.45 3.69 9.07 -74.06 -0.67 3.02 14 Total: -1.00 -78.20 223.84 -2.80 -81.00 By element: Atomic # 1 Polarization: 22.40 SS G_CDS: -1.00 Total: 21.40 kcal Atomic # 6 Polarization: 43.30 SS G_CDS: 5.43 Total: 48.73 kcal Atomic # 7 Polarization: -142.41 SS G_CDS: -8.09 Total: -150.49 kcal Atomic # 8 Polarization: -38.57 SS G_CDS: -1.18 Total: -39.74 kcal Atomic # 14 Polarization: 37.07 SS G_CDS: 2.03 Total: 39.10 kcal Total: -78.20 -2.80 -81.00 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040176451.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.548 kcal (2) G-P(sol) polarization free energy of solvation -78.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds