Wall clock time and date at job start Mon Mar 30 2020 02:51:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.50709 * 109.46702 * 203.06115 * 3 2 1 5 5 C 1.38111 * 120.49715 * 265.00066 * 4 3 2 6 6 C 1.39076 * 118.58017 * 180.02562 * 5 4 3 7 7 Cl 1.73600 * 120.23636 * 179.97438 * 6 5 4 8 8 C 1.38971 * 119.52700 * 359.97438 * 6 5 4 9 9 N 1.31373 * 120.98139 * 0.02562 * 8 6 5 10 10 C 1.33645 * 121.52896 * 0.02562 * 9 8 6 11 11 C 1.41350 * 119.81345 * 180.02562 * 10 9 8 12 12 H 1.07997 * 119.99885 * 173.03812 * 11 10 9 13 13 C 1.40027 * 119.99578 * 353.03887 * 11 10 9 14 14 N 1.30746 * 120.00005 * 6.06175 * 13 11 10 15 15 Si 1.86800 * 119.99758 * 186.05731 * 13 11 10 16 16 H 1.48508 * 109.47004 * 94.99064 * 15 13 11 17 17 H 1.48496 * 109.47436 * 214.98967 * 15 13 11 18 18 H 1.48498 * 109.47508 * 334.99335 * 15 13 11 19 19 H 1.09000 * 109.46966 * 83.06347 * 3 2 1 20 20 H 1.08998 * 109.47577 * 323.05718 * 3 2 1 21 21 H 1.08004 * 120.70771 * 0.04619 * 5 4 3 22 22 H 1.07998 * 119.51231 * 179.72521 * 8 6 5 23 23 H 0.97006 * 119.99563 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1096 1.3083 0.5566 5 6 3.4405 2.3490 -0.2889 6 6 3.8999 3.5379 0.2676 7 17 4.3286 4.8736 -0.7551 8 6 4.0133 3.6491 1.6482 9 7 3.6935 2.6474 2.4359 10 6 3.2489 1.4867 1.9449 11 6 2.9145 0.4330 2.8257 12 1 2.4502 -0.4638 2.4432 13 6 3.1855 0.5521 4.1944 14 7 3.6373 1.6807 4.6755 15 14 2.9012 -0.9015 5.3327 16 1 4.1723 -1.6494 5.5073 17 1 2.4298 -0.4116 6.6529 18 1 1.8758 -1.7991 4.7428 19 1 2.9713 -0.1233 -1.0201 20 1 2.9717 -0.8205 0.6176 21 1 3.3443 2.2420 -1.3593 22 1 4.3743 4.5709 2.0799 23 1 3.8247 1.7633 5.6238 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044371292.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:50 Heat of formation + Delta-G solvation = 23.974138 kcal Electronic energy + Delta-G solvation = -12197.045820 eV Core-core repulsion = 9842.067710 eV Total energy + Delta-G solvation = -2354.978110 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 222.025 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.36852 -37.53460 -37.01274 -35.47674 -34.09716 -31.95537 -29.16797 -27.32757 -23.64056 -22.70095 -19.47863 -18.35581 -17.71101 -16.69311 -16.43987 -15.85443 -14.87109 -14.77921 -14.46259 -14.06667 -13.67945 -13.43557 -13.06738 -12.89155 -12.80471 -12.49091 -12.40011 -12.08316 -11.87985 -11.47126 -11.11848 -10.10464 -9.60158 -9.41147 -8.39304 -6.56923 0.69172 0.96232 1.43656 1.51864 1.56071 1.71847 1.97443 2.01063 2.20421 2.75599 3.38906 3.88809 4.11279 4.31147 4.55656 4.56191 4.83497 4.89454 5.17755 5.28804 5.51200 5.61392 5.94618 6.17586 6.62635 6.77046 6.84411 8.04797 8.35848 Molecular weight = 222.03amu Principal moments of inertia in cm(-1) A = 0.026089 B = 0.010519 C = 0.007850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.998977 B = 2661.259314 C = 3566.012613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C 0.245 3.755 3 C 0.046 3.954 4 C -0.247 4.247 5 C -0.028 4.028 6 C -0.227 4.227 7 Cl -0.100 7.100 8 C 0.133 3.867 9 N -0.510 5.510 10 C 0.230 3.770 11 C -0.440 4.440 12 H 0.104 0.896 13 C 0.025 3.975 14 N -0.745 5.745 15 Si 0.978 3.022 16 H -0.257 1.257 17 H -0.275 1.275 18 H -0.255 1.255 19 H 0.146 0.854 20 H 0.129 0.871 21 H 0.144 0.856 22 H 0.134 0.866 23 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.176 -2.878 -4.695 6.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.190 5.190 2 C -0.070 4.070 3 C 0.006 3.994 4 C -0.254 4.254 5 C -0.053 4.053 6 C -0.259 4.259 7 Cl -0.072 7.072 8 C -0.035 4.035 9 N -0.223 5.223 10 C 0.107 3.893 11 C -0.470 4.470 12 H 0.122 0.878 13 C -0.198 4.198 14 N -0.366 5.366 15 Si 0.799 3.201 16 H -0.181 1.181 17 H -0.200 1.200 18 H -0.178 1.178 19 H 0.163 0.837 20 H 0.147 0.853 21 H 0.161 0.839 22 H 0.152 0.848 23 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.637 -2.617 -3.666 4.792 hybrid contribution 0.312 0.081 -0.204 0.382 sum 1.950 -2.536 -3.870 5.021 Atomic orbital electron populations 1.81088 1.14810 1.11283 1.11804 1.29930 0.95819 0.90734 0.90566 1.18058 0.79130 0.96795 1.05392 1.20235 1.14460 0.97203 0.93454 1.21040 0.94082 0.90349 0.99813 1.21562 1.20804 0.91982 0.91508 1.98230 1.92865 1.47476 1.68678 1.22856 0.94122 0.97811 0.88664 1.68872 1.16861 1.00412 1.36148 1.18940 0.89129 0.90804 0.90471 1.20131 1.33181 1.01504 0.92166 0.87772 1.26995 0.92967 0.99206 1.00650 1.70198 1.25641 1.25755 1.15050 0.85228 0.79918 0.77892 0.77077 1.18134 1.20034 1.17838 0.83686 0.85327 0.83852 0.84838 0.90720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -20.64 18.54 20.01 0.37 -20.27 14 2 C 0.25 8.63 15.25 89.44 1.36 9.99 14 3 C 0.05 1.35 5.20 28.05 0.15 1.49 14 4 C -0.25 -9.66 5.16 -19.30 -0.10 -9.76 14 5 C -0.03 -1.05 9.62 22.44 0.22 -0.84 14 6 C -0.23 -9.08 6.37 22.65 0.14 -8.94 14 7 Cl -0.10 -3.41 28.98 -2.72 -0.08 -3.49 14 8 C 0.13 6.00 10.98 84.94 0.93 6.94 14 9 N -0.51 -26.13 7.89 -188.98 -1.49 -27.62 14 10 C 0.23 11.04 6.54 40.22 0.26 11.30 14 11 C -0.44 -20.62 8.59 23.47 0.20 -20.42 14 12 H 0.10 4.39 6.14 -2.91 -0.02 4.37 14 13 C 0.03 1.18 5.49 85.29 0.47 1.65 14 14 N -0.75 -37.36 11.49 21.84 0.25 -37.10 14 15 Si 0.98 34.91 29.56 68.60 2.03 36.94 14 16 H -0.26 -8.72 7.11 99.48 0.71 -8.01 14 17 H -0.28 -9.78 7.11 99.48 0.71 -9.07 14 18 H -0.25 -8.82 7.11 99.48 0.71 -8.11 14 19 H 0.15 2.89 8.06 -2.39 -0.02 2.87 14 20 H 0.13 3.44 6.73 -2.39 -0.02 3.42 14 21 H 0.14 4.29 8.06 -2.91 -0.02 4.27 14 22 H 0.13 5.63 8.06 -2.91 -0.02 5.60 14 23 H 0.28 12.85 8.29 -92.70 -0.77 12.08 14 Total: -1.00 -58.69 236.35 5.97 -52.72 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: 1.25 Total: 7.42 kcal Atomic # 6 Polarization: -12.22 SS G_CDS: 3.64 Total: -8.59 kcal Atomic # 7 Polarization: -84.13 SS G_CDS: -0.87 Total: -85.00 kcal Atomic # 14 Polarization: 34.91 SS G_CDS: 2.03 Total: 36.94 kcal Atomic # 17 Polarization: -3.41 SS G_CDS: -0.08 Total: -3.49 kcal Total: -58.69 5.97 -52.72 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044371292.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.697 kcal (2) G-P(sol) polarization free energy of solvation -58.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.723 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds