Wall clock time and date at job start Mon Mar 30 2020 02:46:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30774 * 1 3 3 Si 1.86801 * 119.99770 * 2 1 4 4 H 1.48496 * 109.47031 * 239.99959 * 3 2 1 5 5 H 1.48504 * 109.46970 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47038 * 119.99935 * 3 2 1 7 7 C 1.39908 * 120.00278 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00278 * 180.02562 * 7 2 1 9 9 C 1.41795 * 120.00012 * 359.72105 * 7 2 1 10 10 N 1.31957 * 126.41071 * 359.97059 * 9 7 2 11 11 O 1.21269 * 110.19865 * 179.79806 * 10 9 7 12 12 C 1.34474 * 110.08249 * 0.46706 * 11 10 9 13 13 C 1.46842 * 126.47785 * 179.69448 * 12 11 10 14 14 C 1.36488 * 125.44627 * 0.02562 * 13 12 11 15 15 C 1.37705 * 113.27852 * 179.97438 * 14 13 12 16 16 C 1.33646 * 115.08021 * 0.02562 * 15 14 13 17 17 S 1.70616 * 110.97174 * 359.76629 * 16 15 14 18 18 N 1.32149 * 107.05133 * 359.70585 * 12 11 10 19 19 H 0.96995 * 120.00209 * 359.97438 * 1 2 3 20 20 H 1.07994 * 123.35786 * 359.97438 * 14 13 12 21 21 H 1.07996 * 122.45360 * 179.97438 * 15 14 13 22 22 H 1.07999 * 124.51399 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3077 0.0000 0.0000 3 14 2.2417 1.6178 0.0000 4 1 3.0954 1.6965 -1.2125 5 1 1.2766 2.7465 -0.0006 6 1 3.0954 1.6965 1.2125 7 6 2.0073 -1.2116 -0.0005 8 1 3.0874 -1.2116 -0.0001 9 6 1.2984 -2.4396 0.0049 10 7 -0.0129 -2.5870 0.0113 11 8 -0.3018 -3.7648 0.0106 12 6 0.8147 -4.5142 0.0140 13 6 0.8816 -5.9810 0.0207 14 6 -0.1931 -6.8224 0.0242 15 6 0.1581 -8.1539 0.0298 16 6 1.4730 -8.3929 0.0315 17 16 2.3587 -6.9347 0.0194 18 7 1.8406 -3.6811 0.0103 19 1 -0.4850 0.8400 0.0004 20 1 -1.2167 -6.4782 0.0227 21 1 -0.5753 -8.9467 0.0335 22 1 1.9159 -9.3779 0.0353 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071500941.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:49 Heat of formation + Delta-G solvation = 89.696042 kcal Electronic energy + Delta-G solvation = -12101.365167 eV Core-core repulsion = 9751.280679 eV Total energy + Delta-G solvation = -2350.084488 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 222.020 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -43.25074 -37.56407 -34.50461 -33.16793 -31.24331 -28.34705 -26.50984 -24.47566 -21.95321 -21.48996 -19.23126 -17.95323 -16.58247 -16.18800 -15.76320 -15.15884 -14.49039 -13.50125 -13.04233 -12.98128 -12.49532 -12.17557 -11.39463 -11.32042 -11.00778 -10.66068 -10.43420 -10.40915 -10.19657 -9.73131 -9.18004 -8.79971 -8.33986 -7.69314 -6.66314 -4.68933 0.84763 1.68814 2.25533 2.57836 3.02853 3.10026 3.13593 3.35272 3.95816 4.03931 4.24662 5.15309 5.18413 5.28659 5.65920 5.75964 6.18705 6.32916 6.49546 6.57782 6.85496 7.22415 7.61694 8.25481 8.44264 8.80295 10.22832 10.36390 Molecular weight = 222.02amu Principal moments of inertia in cm(-1) A = 0.075348 B = 0.006787 C = 0.006240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 371.519415 B = 4124.610540 C = 4486.282153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.773 5.773 2 C 0.069 3.931 3 Si 0.927 3.073 4 H -0.264 1.264 5 H -0.278 1.278 6 H -0.264 1.264 7 C -0.433 4.433 8 H 0.093 0.907 9 C 0.294 3.706 10 N -0.417 5.417 11 O 0.037 5.963 12 C 0.176 3.824 13 C -0.111 4.111 14 C -0.116 4.116 15 C -0.136 4.136 16 C -0.272 4.272 17 S 0.244 5.756 18 N -0.507 5.507 19 H 0.279 0.721 20 H 0.149 0.851 21 H 0.138 0.862 22 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.714 -11.447 0.037 11.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.402 5.402 2 C -0.152 4.152 3 Si 0.751 3.249 4 H -0.189 1.189 5 H -0.203 1.203 6 H -0.189 1.189 7 C -0.474 4.474 8 H 0.111 0.889 9 C 0.043 3.957 10 N -0.142 5.142 11 O -0.008 6.008 12 C -0.044 4.044 13 C -0.231 4.231 14 C -0.149 4.149 15 C -0.167 4.167 16 C -0.410 4.410 17 S 0.510 5.490 18 N -0.249 5.249 19 H 0.090 0.910 20 H 0.167 0.833 21 H 0.156 0.844 22 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 2.888 -10.283 0.033 10.681 hybrid contribution -1.315 0.209 0.008 1.332 sum 1.573 -10.074 0.041 10.196 Atomic orbital electron populations 1.69864 1.07193 1.28992 1.34104 1.25858 0.95019 1.01228 0.93088 0.86073 0.79566 0.79419 0.79868 1.18889 1.20296 1.18892 1.18400 0.94275 0.86063 1.48679 0.88874 1.22190 0.85915 0.91562 0.96033 1.75559 1.16066 0.90009 1.32600 1.85393 1.33713 1.13662 1.68012 1.24696 0.84476 0.92263 1.02921 1.21751 0.98000 0.90616 1.12723 1.20732 0.99519 0.91940 1.02758 1.19843 0.95635 0.96475 1.04793 1.25245 0.99064 1.04254 1.12474 1.83274 1.06011 0.92461 1.67253 1.72373 1.28187 1.00853 1.23491 0.90985 0.83292 0.84382 0.81903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.93 11.97 55.54 0.66 -21.27 14 2 C 0.07 1.87 5.49 -17.38 -0.10 1.78 14 3 Si 0.93 19.66 29.56 -169.99 -5.02 14.63 14 4 H -0.26 -5.47 7.11 56.52 0.40 -5.07 14 5 H -0.28 -5.70 7.11 56.52 0.40 -5.30 14 6 H -0.26 -5.48 7.11 56.52 0.40 -5.07 14 7 C -0.43 -12.45 9.52 -37.60 -0.36 -12.81 14 8 H 0.09 2.52 7.85 -52.49 -0.41 2.11 14 9 C 0.29 8.71 7.67 -157.71 -1.21 7.50 14 10 N -0.42 -12.39 10.45 30.35 0.32 -12.08 14 11 O 0.04 0.97 11.32 15.91 0.18 1.15 14 12 C 0.18 4.23 8.21 -14.06 -0.12 4.11 14 13 C -0.11 -2.08 6.46 -36.73 -0.24 -2.31 14 14 C -0.12 -1.79 10.26 -40.41 -0.41 -2.20 14 15 C -0.14 -1.70 10.15 -41.39 -0.42 -2.12 14 16 C -0.27 -3.27 10.92 29.12 0.32 -2.95 14 17 S 0.24 3.66 23.08 -107.50 -2.48 1.18 14 18 N -0.51 -13.62 11.64 -11.51 -0.13 -13.75 14 19 H 0.28 7.18 8.29 -40.82 -0.34 6.84 14 20 H 0.15 2.14 8.06 -52.49 -0.42 1.71 14 21 H 0.14 1.32 8.06 -52.49 -0.42 0.90 14 22 H 0.16 1.44 8.06 -52.49 -0.42 1.02 14 LS Contribution 228.33 15.07 3.44 3.44 Total: -1.00 -32.18 228.33 -6.38 -38.56 By element: Atomic # 1 Polarization: -2.06 SS G_CDS: -0.81 Total: -2.87 kcal Atomic # 6 Polarization: -6.47 SS G_CDS: -2.53 Total: -9.00 kcal Atomic # 7 Polarization: -47.94 SS G_CDS: 0.85 Total: -47.10 kcal Atomic # 8 Polarization: 0.97 SS G_CDS: 0.18 Total: 1.15 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -5.02 Total: 14.63 kcal Atomic # 16 Polarization: 3.66 SS G_CDS: -2.48 Total: 1.18 kcal Total LS contribution 3.44 Total: 3.44 kcal Total: -32.18 -6.38 -38.56 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071500941.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.260 kcal (2) G-P(sol) polarization free energy of solvation -32.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.564 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds