Wall clock time and date at job start Mon Mar 30 2020 02:46:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30774 * 1 3 3 Si 1.86801 * 119.99770 * 2 1 4 4 H 1.48496 * 109.47031 * 239.99959 * 3 2 1 5 5 H 1.48504 * 109.46970 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47038 * 119.99935 * 3 2 1 7 7 C 1.39908 * 120.00278 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00278 * 180.02562 * 7 2 1 9 9 C 1.41795 * 120.00012 * 359.72105 * 7 2 1 10 10 N 1.31957 * 126.41071 * 359.97059 * 9 7 2 11 11 O 1.21269 * 110.19865 * 179.79806 * 10 9 7 12 12 C 1.34474 * 110.08249 * 0.46706 * 11 10 9 13 13 C 1.46842 * 126.47785 * 179.69448 * 12 11 10 14 14 C 1.36488 * 125.44627 * 0.02562 * 13 12 11 15 15 C 1.37705 * 113.27852 * 179.97438 * 14 13 12 16 16 C 1.33646 * 115.08021 * 0.02562 * 15 14 13 17 17 S 1.70616 * 110.97174 * 359.76629 * 16 15 14 18 18 N 1.32149 * 107.05133 * 359.70585 * 12 11 10 19 19 H 0.96995 * 120.00209 * 359.97438 * 1 2 3 20 20 H 1.07994 * 123.35786 * 359.97438 * 14 13 12 21 21 H 1.07996 * 122.45360 * 179.97438 * 15 14 13 22 22 H 1.07999 * 124.51399 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3077 0.0000 0.0000 3 14 2.2417 1.6178 0.0000 4 1 3.0954 1.6965 -1.2125 5 1 1.2766 2.7465 -0.0006 6 1 3.0954 1.6965 1.2125 7 6 2.0073 -1.2116 -0.0005 8 1 3.0874 -1.2116 -0.0001 9 6 1.2984 -2.4396 0.0049 10 7 -0.0129 -2.5870 0.0113 11 8 -0.3018 -3.7648 0.0106 12 6 0.8147 -4.5142 0.0140 13 6 0.8816 -5.9810 0.0207 14 6 -0.1931 -6.8224 0.0242 15 6 0.1581 -8.1539 0.0298 16 6 1.4730 -8.3929 0.0315 17 16 2.3587 -6.9347 0.0194 18 7 1.8406 -3.6811 0.0103 19 1 -0.4850 0.8400 0.0004 20 1 -1.2167 -6.4782 0.0227 21 1 -0.5753 -8.9467 0.0335 22 1 1.9159 -9.3779 0.0353 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071500941.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:49 Heat of formation + Delta-G solvation = 66.360218 kcal Electronic energy + Delta-G solvation = -12102.377084 eV Core-core repulsion = 9751.280679 eV Total energy + Delta-G solvation = -2351.096405 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 222.020 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -45.28489 -38.74347 -36.54657 -35.15516 -33.02460 -29.89095 -28.61175 -25.80600 -23.98617 -23.18173 -20.74343 -19.34787 -18.33391 -18.23610 -17.65248 -16.61715 -16.20990 -15.08434 -14.70919 -14.20093 -13.63564 -13.49779 -13.16823 -13.13607 -13.00802 -12.38733 -12.32302 -12.01562 -11.71510 -11.50176 -11.24573 -10.62835 -9.53389 -9.30332 -8.67836 -6.85722 -0.47262 0.44191 1.08358 1.13242 1.36067 1.36632 1.53215 1.83550 2.10165 2.18512 2.58092 3.17707 3.47124 4.21060 4.43583 4.47970 4.64698 4.81848 5.12153 5.16782 5.34479 5.45678 5.61912 6.11667 6.36447 6.70152 8.22721 8.36759 Molecular weight = 222.02amu Principal moments of inertia in cm(-1) A = 0.075348 B = 0.006787 C = 0.006240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 371.519415 B = 4124.610540 C = 4486.282153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.812 5.812 2 C 0.021 3.979 3 Si 1.014 2.986 4 H -0.254 1.254 5 H -0.264 1.264 6 H -0.254 1.254 7 C -0.468 4.468 8 H 0.097 0.903 9 C 0.266 3.734 10 N -0.460 5.460 11 O 0.021 5.979 12 C 0.203 3.797 13 C -0.188 4.188 14 C -0.083 4.083 15 C -0.145 4.145 16 C -0.227 4.227 17 S 0.242 5.758 18 N -0.539 5.539 19 H 0.288 0.712 20 H 0.155 0.845 21 H 0.180 0.820 22 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.293 -13.329 0.050 13.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C -0.196 4.196 3 Si 0.831 3.169 4 H -0.178 1.178 5 H -0.189 1.189 6 H -0.178 1.178 7 C -0.509 4.509 8 H 0.115 0.885 9 C 0.015 3.985 10 N -0.190 5.190 11 O -0.020 6.020 12 C -0.016 4.016 13 C -0.307 4.307 14 C -0.119 4.119 15 C -0.175 4.175 16 C -0.366 4.366 17 S 0.508 5.492 18 N -0.280 5.280 19 H 0.098 0.902 20 H 0.173 0.827 21 H 0.197 0.803 22 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 3.472 -12.215 0.045 12.699 hybrid contribution -1.529 0.427 0.005 1.587 sum 1.943 -11.788 0.050 11.948 Atomic orbital electron populations 1.69979 1.09216 1.30648 1.34234 1.27063 0.95938 1.05143 0.91505 0.84805 0.78117 0.73522 0.80416 1.17818 1.18856 1.17831 1.18870 0.94780 0.87112 1.50103 0.88498 1.22691 0.86501 0.92887 0.96438 1.75499 1.16481 0.91570 1.35467 1.85272 1.34341 1.13218 1.69181 1.25537 0.83034 0.94365 0.98646 1.21908 1.01144 0.88174 1.19497 1.21140 0.99119 0.93101 0.98538 1.20168 0.96809 0.95704 1.04784 1.25826 0.98521 1.04564 1.07641 1.83298 1.05219 0.93594 1.67087 1.72331 1.29104 1.00472 1.26065 0.90173 0.82746 0.80255 0.77434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -47.54 11.97 21.81 0.26 -47.28 14 2 C 0.02 1.15 5.49 85.25 0.47 1.62 14 3 Si 1.01 40.55 29.56 68.60 2.03 42.58 14 4 H -0.25 -9.68 7.11 99.48 0.71 -8.98 14 5 H -0.26 -9.89 7.11 99.48 0.71 -9.18 14 6 H -0.25 -9.69 7.11 99.48 0.71 -8.98 14 7 C -0.47 -28.02 9.52 23.55 0.22 -27.80 14 8 H 0.10 5.47 7.85 -2.91 -0.02 5.44 14 9 C 0.27 16.61 7.67 135.03 1.04 17.64 14 10 N -0.46 -28.90 10.45 -59.36 -0.62 -29.52 14 11 O 0.02 1.17 11.32 67.02 0.76 1.93 14 12 C 0.20 10.17 8.21 86.94 0.71 10.88 14 13 C -0.19 -6.98 6.46 24.11 0.16 -6.83 14 14 C -0.08 -2.39 10.26 21.73 0.22 -2.17 14 15 C -0.14 -2.92 10.15 21.10 0.21 -2.71 14 16 C -0.23 -4.31 10.92 66.78 0.73 -3.59 14 17 S 0.24 6.80 23.08 -56.49 -1.30 5.50 14 18 N -0.54 -30.37 11.64 -305.23 -3.55 -33.93 14 19 H 0.29 15.11 8.29 -92.71 -0.77 14.34 14 20 H 0.15 4.19 8.06 -2.91 -0.02 4.16 14 21 H 0.18 2.27 8.06 -2.91 -0.02 2.24 14 22 H 0.21 2.18 8.06 -2.91 -0.02 2.16 14 Total: -1.00 -75.05 228.33 2.59 -72.46 By element: Atomic # 1 Polarization: -0.05 SS G_CDS: 1.26 Total: 1.21 kcal Atomic # 6 Polarization: -16.72 SS G_CDS: 3.76 Total: -12.95 kcal Atomic # 7 Polarization: -106.81 SS G_CDS: -3.91 Total: -110.72 kcal Atomic # 8 Polarization: 1.17 SS G_CDS: 0.76 Total: 1.93 kcal Atomic # 14 Polarization: 40.55 SS G_CDS: 2.03 Total: 42.58 kcal Atomic # 16 Polarization: 6.80 SS G_CDS: -1.30 Total: 5.50 kcal Total: -75.05 2.59 -72.46 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071500941.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.820 kcal (2) G-P(sol) polarization free energy of solvation -75.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.460 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds