Wall clock time and date at job start Mon Mar 30 2020 03:18:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50694 * 109.47194 * 2 1 4 4 N 1.30629 * 125.62271 * 270.28246 * 3 2 1 5 5 N 1.39770 * 109.20830 * 180.14177 * 4 3 2 6 6 C 1.36998 * 126.09046 * 179.87337 * 5 4 3 7 7 H 1.08002 * 120.00307 * 179.69600 * 6 5 4 8 8 C 1.38912 * 119.99727 * 359.41560 * 6 5 4 9 9 N 1.31374 * 120.00264 * 0.27547 * 8 6 5 10 10 Si 1.86803 * 119.99778 * 180.27693 * 8 6 5 11 11 H 1.48506 * 109.47253 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47428 * 120.00149 * 10 8 6 13 13 H 1.48498 * 109.47018 * 240.00020 * 10 8 6 14 14 C 1.39266 * 107.81537 * 359.61367 * 5 4 3 15 15 C 1.39772 * 140.47294 * 180.25338 * 14 5 4 16 16 C 1.32842 * 115.57691 * 180.02562 * 15 14 5 17 17 S 1.75608 * 110.42463 * 359.96844 * 16 15 14 18 18 C 1.37999 * 106.36410 * 0.22355 * 14 5 4 19 19 H 1.09001 * 109.46934 * 60.00364 * 1 2 3 20 20 H 1.08998 * 109.46808 * 179.97438 * 1 2 3 21 21 H 1.08995 * 109.46943 * 300.00122 * 1 2 3 22 22 H 1.09005 * 109.47339 * 240.00158 * 2 1 3 23 23 H 1.09001 * 109.46769 * 120.00165 * 2 1 3 24 24 H 0.97005 * 120.00008 * 179.97438 * 9 8 6 25 25 H 1.08003 * 122.21152 * 359.95135 * 15 14 5 26 26 H 1.07998 * 124.78425 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2810 2.1398 -1.0618 5 7 2.7329 3.4021 -0.6669 6 6 3.0946 4.4271 -1.5008 7 1 3.4266 5.3681 -1.0875 8 6 3.0398 4.2543 -2.8780 9 7 2.6359 3.1097 -3.3809 10 14 3.5403 5.6493 -4.0151 11 1 3.9527 6.8240 -3.2056 12 1 4.6754 5.2110 -4.8664 13 1 2.3901 6.0221 -4.8772 14 6 2.7442 3.4343 0.7254 15 6 3.0491 4.2977 1.7814 16 6 2.8733 3.7982 2.9997 17 16 2.2893 2.1447 2.9056 18 6 2.3062 2.1953 1.1464 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8899 22 1 1.8934 -0.5138 -0.8900 23 1 1.8933 -0.5139 0.8900 24 1 2.5973 2.9892 -4.3426 25 1 3.4051 5.3041 1.6177 26 1 3.0628 4.3335 3.9183 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074272185.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:18 Heat of formation + Delta-G solvation = 71.045896 kcal Electronic energy + Delta-G solvation = -12743.217869 eV Core-core repulsion = 10528.157745 eV Total energy + Delta-G solvation = -2215.060124 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 222.052 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.58261 -36.38951 -35.95917 -34.07704 -31.50368 -29.09191 -27.06100 -24.61585 -23.78826 -21.01897 -20.66251 -19.76087 -17.44979 -16.73242 -15.87285 -15.71939 -15.52824 -14.96488 -14.72272 -14.36781 -13.70994 -13.40294 -13.09502 -13.05826 -12.77994 -12.42495 -12.14214 -12.08902 -11.87613 -11.55012 -11.25278 -10.84556 -10.35638 -9.06694 -8.64305 -8.58298 -6.19242 0.36038 0.99747 1.34183 1.39180 1.46940 1.54688 1.99599 2.06926 2.09901 2.62267 3.00422 3.98086 4.16727 4.32453 4.53633 4.60121 4.62951 4.74536 4.89101 5.01504 5.06706 5.19699 5.31168 5.35982 5.61598 5.84334 6.09609 6.59606 7.31807 7.54876 8.41274 Molecular weight = 222.05amu Principal moments of inertia in cm(-1) A = 0.030522 B = 0.010734 C = 0.008141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.155049 B = 2607.950242 C = 3438.415968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.026 4.026 3 C 0.010 3.990 4 N -0.274 5.274 5 N -0.164 5.164 6 C -0.341 4.341 7 H 0.130 0.870 8 C -0.005 4.005 9 N -0.816 5.816 10 Si 1.020 2.980 11 H -0.246 1.246 12 H -0.267 1.267 13 H -0.268 1.268 14 C -0.049 4.049 15 C -0.106 4.106 16 C -0.191 4.191 17 S 0.094 5.906 18 C -0.316 4.316 19 H 0.032 0.968 20 H 0.088 0.912 21 H 0.050 0.950 22 H 0.065 0.935 23 H 0.085 0.915 24 H 0.280 0.720 25 H 0.142 0.858 26 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.433 0.457 6.977 7.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.065 4.065 3 C -0.150 4.150 4 N -0.104 5.104 5 N 0.065 4.935 6 C -0.474 4.474 7 H 0.148 0.852 8 C -0.218 4.218 9 N -0.444 5.444 10 Si 0.838 3.162 11 H -0.169 1.169 12 H -0.192 1.192 13 H -0.192 1.192 14 C -0.176 4.176 15 C -0.139 4.139 16 C -0.328 4.328 17 S 0.347 5.653 18 C -0.441 4.441 19 H 0.051 0.949 20 H 0.107 0.893 21 H 0.069 0.931 22 H 0.083 0.917 23 H 0.103 0.897 24 H 0.090 0.910 25 H 0.160 0.840 26 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -0.831 -0.671 6.499 6.586 hybrid contribution 0.596 1.573 -1.084 2.001 sum -0.234 0.902 5.414 5.494 Atomic orbital electron populations 1.21604 0.93806 1.02523 1.00858 1.19795 0.96626 0.87766 1.02354 1.22121 1.06200 0.98517 0.88193 1.77704 1.21259 0.90452 1.20963 1.45092 1.38122 1.08864 1.01398 1.20593 1.45220 0.93028 0.88570 0.85225 1.26846 0.95134 1.00932 0.98856 1.70378 1.35063 1.24795 1.14163 0.84525 0.78345 0.76378 0.76931 1.16899 1.19227 1.19240 1.19650 1.14109 0.98024 0.85862 1.19024 1.04872 1.00108 0.89881 1.25382 1.08404 0.98370 1.00616 1.82696 1.73547 1.12842 0.96263 1.23075 1.23176 0.99232 0.98627 0.94896 0.89308 0.93109 0.91664 0.89657 0.90974 0.83994 0.78069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.47 9.90 71.98 0.71 -3.76 15 2 C -0.03 -1.04 6.49 29.85 0.19 -0.85 15 3 C 0.01 0.53 6.48 43.42 0.28 0.81 15 4 N -0.27 -16.16 10.31 -46.76 -0.48 -16.64 15 5 N -0.16 -9.53 3.79 -184.40 -0.70 -10.23 15 6 C -0.34 -18.87 10.26 84.05 0.86 -18.01 15 7 H 0.13 6.49 7.83 -2.91 -0.02 6.47 15 8 C -0.01 -0.29 5.50 84.92 0.47 0.18 15 9 N -0.82 -46.31 11.81 21.65 0.26 -46.05 15 10 Si 1.02 38.93 29.55 68.60 2.03 40.96 15 11 H -0.25 -8.64 7.11 99.48 0.71 -7.93 15 12 H -0.27 -9.89 7.11 99.48 0.71 -9.19 15 13 H -0.27 -9.90 7.11 99.48 0.71 -9.19 15 14 C -0.05 -2.53 7.23 38.27 0.28 -2.25 15 15 C -0.11 -4.33 10.17 21.46 0.22 -4.11 15 16 C -0.19 -6.41 11.14 66.64 0.74 -5.67 15 17 S 0.09 3.41 23.31 -56.49 -1.32 2.10 15 18 C -0.32 -15.34 7.22 22.90 0.17 -15.17 15 19 H 0.03 1.26 8.14 -2.39 -0.02 1.24 15 20 H 0.09 2.34 8.14 -2.39 -0.02 2.32 15 21 H 0.05 1.73 8.14 -2.39 -0.02 1.71 15 22 H 0.06 2.59 8.14 -2.38 -0.02 2.57 15 23 H 0.08 2.96 8.14 -2.39 -0.02 2.94 15 24 H 0.28 14.44 8.31 -92.70 -0.77 13.67 15 25 H 0.14 5.14 8.06 -2.91 -0.02 5.12 15 26 H 0.20 4.71 8.06 -2.91 -0.02 4.69 15 Total: -1.00 -69.18 247.44 4.89 -64.29 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: 1.18 Total: 14.41 kcal Atomic # 6 Polarization: -52.74 SS G_CDS: 3.92 Total: -48.82 kcal Atomic # 7 Polarization: -72.01 SS G_CDS: -0.93 Total: -72.93 kcal Atomic # 14 Polarization: 38.93 SS G_CDS: 2.03 Total: 40.96 kcal Atomic # 16 Polarization: 3.41 SS G_CDS: -1.32 Total: 2.10 kcal Total: -69.18 4.89 -64.29 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074272185.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.337 kcal (2) G-P(sol) polarization free energy of solvation -69.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.291 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds