Wall clock time and date at job start Mon Mar 30 2020 02:47:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31309 * 1 3 3 Si 1.86794 * 120.00313 * 2 1 4 4 H 1.48498 * 109.47091 * 0.02562 * 3 2 1 5 5 H 1.48504 * 109.47094 * 120.00029 * 3 2 1 6 6 H 1.48501 * 109.47452 * 240.00062 * 3 2 1 7 7 C 1.38997 * 119.99512 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00012 * 153.61207 * 7 2 1 9 9 N 1.37079 * 120.00583 * 333.60420 * 7 2 1 10 10 C 1.36522 * 119.02176 * 331.12194 * 9 7 2 11 11 C 1.34759 * 121.45734 * 179.97438 * 10 9 7 12 12 C 1.40473 * 120.09739 * 0.02562 * 11 10 9 13 13 S 1.76456 * 134.35269 * 179.97438 * 12 11 10 14 14 N 1.69654 * 95.39457 * 180.02562 * 13 12 11 15 15 C 1.29131 * 108.28200 * 0.02562 * 14 13 12 16 16 C 1.39858 * 118.87586 * 0.02562 * 15 14 13 17 17 C 1.34520 * 119.03132 * 150.84230 * 9 7 2 18 18 O 1.21857 * 120.29131 * 0.02562 * 17 9 7 19 19 H 0.97000 * 120.00440 * 174.29596 * 1 2 3 20 20 H 1.08001 * 119.27193 * 359.94562 * 10 9 7 21 21 H 1.07995 * 119.95394 * 179.97438 * 11 10 9 22 22 H 1.07996 * 120.56375 * 179.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3131 0.0000 0.0000 3 14 2.2471 1.6176 0.0000 4 1 1.2822 2.7464 0.0006 5 1 3.1009 1.6962 1.2125 6 1 3.1009 1.6963 -1.2125 7 6 2.0080 -1.2038 -0.0005 8 1 3.0036 -1.2524 -0.4163 9 7 1.4298 -2.3293 0.5267 10 6 0.5143 -2.1954 1.5306 11 6 -0.0845 -3.2684 2.0840 12 6 0.2279 -4.5610 1.6314 13 16 -0.3080 -6.1842 2.0689 14 7 0.6710 -6.9855 0.9384 15 6 1.3460 -6.0985 0.2863 16 6 1.1666 -4.7476 0.6008 17 6 1.7769 -3.5327 0.0358 18 8 2.5942 -3.6169 -0.8641 19 1 -0.4851 -0.8359 -0.0835 20 1 0.2648 -1.2078 1.8895 21 1 -0.8050 -3.1344 2.8772 22 1 2.0378 -6.3949 -0.4881 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074272986.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:00 Heat of formation + Delta-G solvation = -0.957947 kcal Electronic energy + Delta-G solvation = -12580.749765 eV Core-core repulsion = 10226.734226 eV Total energy + Delta-G solvation = -2354.015540 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 222.020 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.22789 -38.97049 -38.02810 -35.52573 -33.27908 -30.57025 -27.72665 -25.97864 -24.07804 -22.98515 -20.78769 -19.11201 -18.38374 -17.88103 -17.11967 -16.86662 -15.64727 -15.58241 -15.51246 -14.88476 -14.46516 -13.99131 -13.26511 -13.15051 -12.67756 -12.38969 -12.29662 -11.90422 -11.76388 -11.52338 -10.94499 -10.78284 -9.76937 -9.47416 -8.84684 -6.63036 -0.72748 0.34660 0.64907 0.87122 1.09873 1.52669 1.56576 1.84538 2.02249 2.34872 2.46764 2.86757 3.56319 3.75237 3.83476 4.24851 4.54162 4.72450 4.92700 5.05742 5.34118 5.47756 5.58017 6.05310 6.17795 6.68838 7.21065 7.93243 Molecular weight = 222.02amu Principal moments of inertia in cm(-1) A = 0.057084 B = 0.008975 C = 0.008005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 490.385608 B = 3118.872707 C = 3496.870020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.835 5.835 2 C 0.006 3.994 3 Si 1.131 2.869 4 H -0.264 1.264 5 H -0.255 1.255 6 H -0.270 1.270 7 C -0.450 4.450 8 H 0.096 0.904 9 N -0.324 5.324 10 C 0.127 3.873 11 C -0.205 4.205 12 C -0.065 4.065 13 S 0.222 5.778 14 N -0.491 5.491 15 C 0.168 3.832 16 C -0.308 4.308 17 C 0.498 3.502 18 O -0.596 6.596 19 H 0.276 0.724 20 H 0.172 0.828 21 H 0.181 0.819 22 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.998 -0.860 6.111 6.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.462 5.462 2 C -0.205 4.205 3 Si 0.947 3.053 4 H -0.189 1.189 5 H -0.179 1.179 6 H -0.195 1.195 7 C -0.578 4.578 8 H 0.114 0.886 9 N -0.016 5.016 10 C -0.012 4.012 11 C -0.233 4.233 12 C -0.193 4.193 13 S 0.372 5.628 14 N -0.308 5.308 15 C -0.033 4.033 16 C -0.325 4.325 17 C 0.299 3.701 18 O -0.483 6.483 19 H 0.088 0.912 20 H 0.189 0.811 21 H 0.198 0.802 22 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -2.695 -1.205 6.481 7.121 hybrid contribution 1.052 -0.604 -1.351 1.816 sum -1.643 -1.809 5.130 5.682 Atomic orbital electron populations 1.70867 1.07647 1.31790 1.35939 1.28438 0.95775 1.05622 0.90628 0.82752 0.74423 0.69035 0.79107 1.18855 1.17922 1.19514 1.21202 1.03497 0.87360 1.45716 0.88617 1.41623 1.28990 1.07424 1.23530 1.22244 0.90449 1.01607 0.86863 1.19632 1.09011 0.86730 1.07921 1.24241 0.97204 1.00736 0.97162 1.84172 1.46886 0.90501 1.41218 1.76268 1.14727 1.27210 1.12574 1.22164 0.96254 0.87412 0.97513 1.20928 1.10263 0.94366 1.06980 1.18129 0.85068 0.83381 0.83517 1.90679 1.37840 1.86639 1.33109 0.91246 0.81067 0.80170 0.79651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -39.62 12.37 21.66 0.27 -39.35 14 2 C 0.01 0.26 4.71 84.95 0.40 0.66 14 3 Si 1.13 39.11 29.99 68.60 2.06 41.16 14 4 H -0.26 -8.83 7.11 99.48 0.71 -8.12 14 5 H -0.26 -8.07 7.11 99.48 0.71 -7.36 14 6 H -0.27 -9.17 7.11 99.48 0.71 -8.46 14 7 C -0.45 -22.97 8.91 84.05 0.75 -22.22 14 8 H 0.10 5.20 7.58 -2.91 -0.02 5.18 14 9 N -0.32 -15.98 2.62 -470.45 -1.23 -17.22 14 10 C 0.13 5.21 8.25 83.16 0.69 5.90 14 11 C -0.21 -7.21 9.99 22.02 0.22 -6.99 14 12 C -0.07 -2.49 6.82 23.40 0.16 -2.33 14 13 S 0.22 7.26 23.91 -56.49 -1.35 5.90 14 14 N -0.49 -18.21 11.98 -60.00 -0.72 -18.93 14 15 C 0.17 6.64 11.15 85.48 0.95 7.59 14 16 C -0.31 -13.57 6.14 -19.93 -0.12 -13.70 14 17 C 0.50 25.70 7.59 86.65 0.66 26.36 14 18 O -0.60 -34.31 16.80 -4.85 -0.08 -34.39 14 19 H 0.28 13.51 7.03 -92.71 -0.65 12.86 14 20 H 0.17 6.69 6.42 -2.91 -0.02 6.67 14 21 H 0.18 4.73 8.06 -2.91 -0.02 4.71 14 22 H 0.19 6.72 8.06 -2.91 -0.02 6.70 14 Total: -1.00 -59.42 219.71 4.03 -55.39 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: 1.38 Total: 12.18 kcal Atomic # 6 Polarization: -8.45 SS G_CDS: 3.70 Total: -4.74 kcal Atomic # 7 Polarization: -73.81 SS G_CDS: -1.68 Total: -75.50 kcal Atomic # 8 Polarization: -34.31 SS G_CDS: -0.08 Total: -34.39 kcal Atomic # 14 Polarization: 39.11 SS G_CDS: 2.06 Total: 41.16 kcal Atomic # 16 Polarization: 7.26 SS G_CDS: -1.35 Total: 5.90 kcal Total: -59.42 4.03 -55.39 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074272986.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.433 kcal (2) G-P(sol) polarization free energy of solvation -59.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds