Wall clock time and date at job start Mon Mar 30 2020 02:52:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31046 * 1 3 3 Si 1.86800 * 119.99764 * 2 1 4 4 H 1.48507 * 109.46679 * 269.99573 * 3 2 1 5 5 H 1.48504 * 109.47560 * 29.99224 * 3 2 1 6 6 H 1.48494 * 109.47382 * 149.99776 * 3 2 1 7 7 C 1.39850 * 120.00190 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00073 * 180.02562 * 7 2 1 9 9 C 1.39818 * 119.99978 * 0.02562 * 7 2 1 10 10 C 1.40067 * 126.89855 * 359.97438 * 9 7 2 11 11 N 1.32045 * 108.12198 * 180.02562 * 10 9 7 12 12 C 1.33420 * 110.02988 * 0.02562 * 11 10 9 13 13 C 1.40293 * 131.73332 * 180.02562 * 12 11 10 14 14 C 1.36738 * 119.42410 * 179.97438 * 13 12 11 15 15 Cl 1.73604 * 120.16458 * 179.97438 * 14 13 12 16 16 C 1.40285 * 119.66732 * 0.02562 * 14 13 12 17 17 C 1.35278 * 120.11101 * 359.97438 * 16 14 13 18 18 N 1.36259 * 120.59585 * 0.26258 * 17 16 14 19 19 H 0.97000 * 120.00044 * 0.02562 * 1 2 3 20 20 H 1.07995 * 125.93241 * 0.06068 * 10 9 7 21 21 H 1.07998 * 120.28383 * 359.97438 * 13 12 11 22 22 H 1.08005 * 119.94137 * 179.97438 * 16 14 13 23 23 H 1.08002 * 119.69851 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3105 0.0000 0.0000 3 14 2.2444 1.6178 0.0000 4 1 2.4919 2.0463 -1.4002 5 1 1.4418 2.6528 0.6999 6 1 3.5419 1.4404 0.7000 7 6 2.0098 -1.2111 0.0005 8 1 3.0897 -1.2111 0.0010 9 6 1.3107 -2.4220 0.0005 10 6 -0.0798 -2.5903 0.0005 11 7 -0.3368 -3.8855 0.0011 12 6 0.8038 -4.5777 0.0020 13 6 1.0590 -5.9572 0.0024 14 6 2.3524 -6.4010 0.0029 15 17 2.6902 -8.1039 0.0041 16 6 3.4048 -5.4735 0.0035 17 6 3.1402 -4.1469 0.0031 18 7 1.8543 -3.6961 0.0075 19 1 -0.4850 0.8400 -0.0004 20 1 -0.8140 -1.7983 -0.0004 21 1 0.2411 -6.6624 0.0024 22 1 4.4280 -5.8192 0.0043 23 1 3.9556 -3.4386 0.0041 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074376891.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:18 Heat of formation + Delta-G solvation = 63.355757 kcal Electronic energy + Delta-G solvation = -12324.876132 eV Core-core repulsion = 9971.605737 eV Total energy + Delta-G solvation = -2353.270395 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 222.025 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.03748 -36.70306 -35.40042 -33.92341 -32.21333 -29.08204 -28.48459 -25.12342 -22.57856 -21.22009 -20.44023 -17.82291 -16.12413 -15.89123 -15.24173 -14.85016 -14.47199 -13.75074 -13.19093 -12.41057 -12.15541 -11.95314 -11.78211 -11.47670 -11.26547 -10.93109 -10.51247 -10.45103 -10.33585 -9.90297 -9.27728 -8.66050 -7.63343 -7.07108 -6.99346 -4.42260 1.66104 2.25101 2.73320 2.91204 2.92829 2.97274 3.66243 3.94908 4.02587 4.68348 5.05345 5.29373 5.63609 5.81138 5.89917 6.33131 6.66251 6.76909 6.78590 6.86053 7.24985 7.36868 7.69914 8.05621 8.42143 8.55390 8.65331 9.41558 9.95699 Molecular weight = 222.03amu Principal moments of inertia in cm(-1) A = 0.062017 B = 0.007381 C = 0.006612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 451.379208 B = 3792.429727 C = 4233.965895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.070 3.930 3 Si 0.936 3.064 4 H -0.267 1.267 5 H -0.273 1.273 6 H -0.262 1.262 7 C -0.425 4.425 8 H 0.080 0.920 9 C 0.165 3.835 10 C -0.055 4.055 11 N -0.465 5.465 12 C 0.085 3.915 13 C -0.022 4.022 14 C -0.093 4.093 15 Cl -0.095 7.095 16 C -0.173 4.173 17 C 0.092 3.908 18 N -0.412 5.412 19 H 0.287 0.713 20 H 0.202 0.798 21 H 0.133 0.867 22 H 0.135 0.865 23 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.329 -3.195 -0.009 6.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.148 4.148 3 Si 0.760 3.240 4 H -0.192 1.192 5 H -0.198 1.198 6 H -0.186 1.186 7 C -0.460 4.460 8 H 0.098 0.902 9 C 0.054 3.946 10 C -0.211 4.211 11 N -0.183 5.183 12 C -0.146 4.146 13 C -0.043 4.043 14 C -0.124 4.124 15 Cl -0.066 7.066 16 C -0.197 4.197 17 C -0.030 4.030 18 N -0.094 5.094 19 H 0.098 0.902 20 H 0.218 0.782 21 H 0.151 0.849 22 H 0.152 0.848 23 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 4.333 -3.565 0.004 5.612 hybrid contribution 1.305 0.884 -0.007 1.577 sum 5.638 -2.681 -0.002 6.243 Atomic orbital electron populations 1.69575 1.07448 1.29648 1.35368 1.25775 0.95071 1.01371 0.92627 0.85845 0.79789 0.79033 0.79382 1.19186 1.19763 1.18587 1.18438 0.94533 0.88185 1.44818 0.90218 1.19293 0.93143 0.81626 1.00532 1.23920 0.93841 0.91348 1.12027 1.69951 1.24771 1.06373 1.17230 1.19706 0.83680 0.90359 1.20821 1.19689 0.95008 0.91656 0.97919 1.19908 0.93849 0.83205 1.15404 1.98280 1.95697 1.15047 1.97608 1.20050 0.98528 0.90549 1.10550 1.21133 0.86361 0.94997 1.00469 1.42561 1.05061 1.08223 1.53568 0.90172 0.78208 0.84888 0.84767 0.83366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -18.96 10.31 55.55 0.57 -18.38 14 2 C 0.07 1.62 5.50 -17.28 -0.09 1.52 14 3 Si 0.94 17.23 29.56 -169.99 -5.03 12.20 14 4 H -0.27 -4.86 7.11 56.52 0.40 -4.46 14 5 H -0.27 -4.91 7.11 56.52 0.40 -4.51 14 6 H -0.26 -4.76 7.11 56.52 0.40 -4.36 14 7 C -0.43 -10.47 9.26 -38.39 -0.36 -10.83 14 8 H 0.08 1.82 7.81 -52.49 -0.41 1.41 14 9 C 0.16 4.32 6.80 -83.56 -0.57 3.75 14 10 C -0.05 -1.47 10.84 -16.77 -0.18 -1.65 14 11 N -0.46 -12.37 11.23 -11.85 -0.13 -12.50 14 12 C 0.09 2.11 7.77 -155.49 -1.21 0.90 14 13 C -0.02 -0.45 9.88 -39.35 -0.39 -0.84 14 14 C -0.09 -1.74 6.33 -39.36 -0.25 -1.99 14 15 Cl -0.09 -1.50 28.97 -51.86 -1.50 -3.00 14 16 C -0.17 -3.11 9.80 -39.87 -0.39 -3.50 14 17 C 0.09 1.85 10.84 -16.64 -0.18 1.67 14 18 N -0.41 -10.00 2.98 -60.04 -0.18 -10.18 14 19 H 0.29 6.15 8.30 -40.82 -0.34 5.81 14 20 H 0.20 5.40 5.72 -52.49 -0.30 5.10 14 21 H 0.13 2.54 8.06 -52.49 -0.42 2.11 14 22 H 0.13 1.97 8.06 -52.48 -0.42 1.55 14 23 H 0.15 2.56 8.02 -52.49 -0.42 2.14 14 LS Contribution 227.36 15.07 3.43 3.43 Total: -1.00 -27.04 227.36 -7.57 -34.61 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: -1.11 Total: 4.79 kcal Atomic # 6 Polarization: -7.35 SS G_CDS: -3.62 Total: -10.97 kcal Atomic # 7 Polarization: -41.32 SS G_CDS: 0.26 Total: -41.06 kcal Atomic # 14 Polarization: 17.23 SS G_CDS: -5.03 Total: 12.20 kcal Atomic # 17 Polarization: -1.50 SS G_CDS: -1.50 Total: -3.00 kcal Total LS contribution 3.43 Total: 3.43 kcal Total: -27.04 -7.57 -34.61 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074376891.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.968 kcal (2) G-P(sol) polarization free energy of solvation -27.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.613 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds