Wall clock time and date at job start Mon Mar 30 2020 02:52:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30986 * 1 3 3 Si 1.86795 * 120.00134 * 2 1 4 4 H 1.48503 * 109.47235 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47147 * 299.99331 * 3 2 1 6 6 H 1.48496 * 109.47615 * 59.99450 * 3 2 1 7 7 C 1.39711 * 119.99996 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00015 * 180.02562 * 7 2 1 9 9 C 1.41278 * 119.99721 * 0.02562 * 7 2 1 10 10 C 1.39418 * 126.16570 * 180.02562 * 9 7 2 11 11 N 1.36224 * 106.72429 * 180.23904 * 10 9 7 12 12 C 1.36776 * 132.00571 * 179.71906 * 11 10 9 13 13 C 1.34855 * 120.66365 * 180.02562 * 12 11 10 14 14 C 1.40654 * 120.27702 * 359.97436 * 13 12 11 15 15 Cl 1.73591 * 120.14497 * 180.02562 * 14 13 12 16 16 C 1.36196 * 119.70793 * 359.60884 * 14 13 12 17 17 C 1.37369 * 107.57608 * 359.61230 * 11 10 9 18 18 N 1.32502 * 108.85655 * 0.39620 * 17 11 10 19 19 H 0.96996 * 119.99911 * 0.02562 * 1 2 3 20 20 H 1.08002 * 126.63381 * 359.96711 * 10 9 7 21 21 H 1.08000 * 119.66870 * 0.03826 * 12 11 10 22 22 H 1.08000 * 119.86522 * 179.97438 * 13 12 11 23 23 H 1.07997 * 120.29525 * 179.90680 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 14 2.2439 1.6177 0.0000 4 1 3.7039 1.3463 0.0006 5 1 1.8853 2.3963 -1.2126 6 1 1.8851 2.3965 1.2124 7 6 2.0084 -1.2099 0.0005 8 1 3.0883 -1.2099 0.0010 9 6 1.3020 -2.4334 0.0005 10 6 1.8653 -3.7087 0.0015 11 7 0.8303 -4.5944 -0.0043 12 6 0.7957 -5.9617 -0.0111 13 6 -0.3813 -6.6199 -0.0166 14 6 -1.5931 -5.9059 -0.0147 15 17 -3.1063 -6.7566 -0.0211 16 6 -1.5741 -4.5441 0.0006 17 6 -0.3363 -3.8692 0.0001 18 7 -0.0380 -2.5782 -0.0003 19 1 -0.4850 0.8400 -0.0004 20 1 2.9184 -3.9480 0.0020 21 1 1.7203 -6.5199 -0.0120 22 1 -0.3936 -7.6998 -0.0224 23 1 -2.4989 -3.9863 0.0007 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074376982.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:23 Heat of formation + Delta-G solvation = 72.296582 kcal Electronic energy + Delta-G solvation = -12220.566918 eV Core-core repulsion = 9867.684227 eV Total energy + Delta-G solvation = -2352.882691 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 222.025 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.20435 -36.84670 -35.57905 -33.33069 -32.26105 -29.49648 -27.75175 -25.66611 -22.49693 -21.45537 -20.27308 -17.37683 -16.41159 -16.06258 -15.13269 -14.70097 -14.62883 -13.84988 -12.95152 -12.83959 -12.28088 -12.17373 -11.45177 -11.34103 -11.11134 -10.72824 -10.55692 -10.47827 -10.17091 -9.63965 -9.28101 -8.37045 -7.68038 -6.74563 -6.54848 -4.39899 1.50665 2.12820 2.54421 3.02619 3.11504 3.15902 3.75080 3.99424 3.99659 4.53542 5.09589 5.50081 5.50622 5.61945 5.76677 6.18087 6.46769 6.55438 6.67506 6.98653 7.13659 7.34263 7.52998 8.06440 8.37653 8.69308 8.89279 9.61518 10.36100 Molecular weight = 222.03amu Principal moments of inertia in cm(-1) A = 0.061359 B = 0.007023 C = 0.006316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 456.219134 B = 3985.893698 C = 4432.254501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.746 5.746 2 C 0.069 3.931 3 Si 0.913 3.087 4 H -0.261 1.261 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.432 4.432 8 H 0.087 0.913 9 C 0.236 3.764 10 C -0.244 4.244 11 N -0.343 5.343 12 C 0.060 3.940 13 C -0.184 4.184 14 C -0.042 4.042 15 Cl -0.085 7.085 16 C -0.083 4.083 17 C 0.205 3.795 18 N -0.464 5.464 19 H 0.275 0.725 20 H 0.158 0.842 21 H 0.150 0.850 22 H 0.138 0.862 23 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.515 -7.870 -0.022 7.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.369 5.369 2 C -0.153 4.153 3 Si 0.737 3.263 4 H -0.185 1.185 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.465 4.465 8 H 0.105 0.895 9 C 0.111 3.889 10 C -0.374 4.374 11 N -0.017 5.017 12 C -0.068 4.068 13 C -0.208 4.208 14 C -0.074 4.074 15 Cl -0.057 7.057 16 C -0.106 4.106 17 C -0.035 4.035 18 N -0.189 5.189 19 H 0.085 0.915 20 H 0.176 0.824 21 H 0.168 0.832 22 H 0.156 0.844 23 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -1.319 -7.055 -0.025 7.177 hybrid contribution 0.855 -0.120 -0.002 0.864 sum -0.464 -7.174 -0.027 7.190 Atomic orbital electron populations 1.70092 1.07017 1.28087 1.31662 1.25955 0.94950 1.01048 0.93362 0.86194 0.80590 0.81064 0.78455 1.18479 1.19937 1.19940 1.18785 0.93964 0.88050 1.45696 0.89505 1.18560 0.87518 0.91228 0.91578 1.22726 0.91259 0.88843 1.34581 1.42685 1.09621 1.04793 1.44582 1.21200 0.99070 0.82330 1.04158 1.20025 0.89434 0.99791 1.11529 1.20143 0.86075 0.91645 1.09519 1.98306 1.32197 1.77837 1.97345 1.19796 0.95803 0.91372 1.03652 1.21316 0.86083 0.88988 1.07074 1.71726 1.14690 1.08384 1.24099 0.91471 0.82446 0.83242 0.84422 0.84026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -20.44 11.93 55.54 0.66 -19.77 14 2 C 0.07 1.79 5.49 -17.36 -0.10 1.70 14 3 Si 0.91 18.80 29.56 -169.99 -5.02 13.77 14 4 H -0.26 -5.21 7.11 56.52 0.40 -4.81 14 5 H -0.27 -5.57 7.11 56.52 0.40 -5.17 14 6 H -0.27 -5.57 7.11 56.52 0.40 -5.17 14 7 C -0.43 -11.59 9.37 -37.88 -0.36 -11.94 14 8 H 0.09 2.14 7.84 -52.49 -0.41 1.73 14 9 C 0.24 6.50 6.66 -84.98 -0.57 5.94 14 10 C -0.24 -5.85 11.80 -15.16 -0.18 -6.03 14 11 N -0.34 -7.73 2.93 -61.53 -0.18 -7.91 14 12 C 0.06 1.06 10.92 -16.55 -0.18 0.88 14 13 C -0.18 -2.99 9.79 -39.87 -0.39 -3.38 14 14 C -0.04 -0.75 6.33 -39.40 -0.25 -1.00 14 15 Cl -0.09 -1.29 28.97 -51.86 -1.50 -2.79 14 16 C -0.08 -1.73 9.88 -39.28 -0.39 -2.12 14 17 C 0.21 5.06 7.77 -155.80 -1.21 3.85 14 18 N -0.46 -13.12 9.52 -10.33 -0.10 -13.22 14 19 H 0.27 6.82 8.30 -40.82 -0.34 6.48 14 20 H 0.16 3.28 8.06 -52.49 -0.42 2.86 14 21 H 0.15 2.07 8.06 -52.49 -0.42 1.65 14 22 H 0.14 1.78 8.06 -52.49 -0.42 1.36 14 23 H 0.14 2.81 8.06 -52.49 -0.42 2.38 14 LS Contribution 230.62 15.07 3.48 3.48 Total: -1.00 -29.73 230.62 -7.52 -37.25 By element: Atomic # 1 Polarization: 2.54 SS G_CDS: -1.24 Total: 1.30 kcal Atomic # 6 Polarization: -8.50 SS G_CDS: -3.61 Total: -12.12 kcal Atomic # 7 Polarization: -41.28 SS G_CDS: 0.38 Total: -40.90 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -5.02 Total: 13.77 kcal Atomic # 17 Polarization: -1.29 SS G_CDS: -1.50 Total: -2.79 kcal Total LS contribution 3.48 Total: 3.48 kcal Total: -29.73 -7.52 -37.25 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074376982.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.550 kcal (2) G-P(sol) polarization free energy of solvation -29.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds