Wall clock time and date at job start Mon Mar 30 2020 02:52:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30986 * 1 3 3 Si 1.86795 * 120.00134 * 2 1 4 4 H 1.48503 * 109.47235 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47147 * 299.99331 * 3 2 1 6 6 H 1.48496 * 109.47615 * 59.99450 * 3 2 1 7 7 C 1.39711 * 119.99996 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00015 * 180.02562 * 7 2 1 9 9 C 1.41278 * 119.99721 * 0.02562 * 7 2 1 10 10 C 1.39418 * 126.16570 * 180.02562 * 9 7 2 11 11 N 1.36224 * 106.72429 * 180.23904 * 10 9 7 12 12 C 1.36776 * 132.00571 * 179.71906 * 11 10 9 13 13 C 1.34855 * 120.66365 * 180.02562 * 12 11 10 14 14 C 1.40654 * 120.27702 * 359.97436 * 13 12 11 15 15 Cl 1.73591 * 120.14497 * 180.02562 * 14 13 12 16 16 C 1.36196 * 119.70793 * 359.60884 * 14 13 12 17 17 C 1.37369 * 107.57608 * 359.61230 * 11 10 9 18 18 N 1.32502 * 108.85655 * 0.39620 * 17 11 10 19 19 H 0.96996 * 119.99911 * 0.02562 * 1 2 3 20 20 H 1.08002 * 126.63381 * 359.96711 * 10 9 7 21 21 H 1.08000 * 119.66870 * 0.03826 * 12 11 10 22 22 H 1.08000 * 119.86522 * 179.97438 * 13 12 11 23 23 H 1.07997 * 120.29525 * 179.90680 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 14 2.2439 1.6177 0.0000 4 1 3.7039 1.3463 0.0006 5 1 1.8853 2.3963 -1.2126 6 1 1.8851 2.3965 1.2124 7 6 2.0084 -1.2099 0.0005 8 1 3.0883 -1.2099 0.0010 9 6 1.3020 -2.4334 0.0005 10 6 1.8653 -3.7087 0.0015 11 7 0.8303 -4.5944 -0.0043 12 6 0.7957 -5.9617 -0.0111 13 6 -0.3813 -6.6199 -0.0166 14 6 -1.5931 -5.9059 -0.0147 15 17 -3.1063 -6.7566 -0.0211 16 6 -1.5741 -4.5441 0.0006 17 6 -0.3363 -3.8692 0.0001 18 7 -0.0380 -2.5782 -0.0003 19 1 -0.4850 0.8400 -0.0004 20 1 2.9184 -3.9480 0.0020 21 1 1.7203 -6.5199 -0.0120 22 1 -0.3936 -7.6998 -0.0224 23 1 -2.4989 -3.9863 0.0007 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074376982.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:22 Heat of formation + Delta-G solvation = 55.076267 kcal Electronic energy + Delta-G solvation = -12221.313647 eV Core-core repulsion = 9867.684227 eV Total energy + Delta-G solvation = -2353.629420 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 222.025 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.92216 -38.38079 -37.10429 -35.13108 -33.95317 -31.21400 -29.49913 -27.44869 -24.10128 -23.13555 -22.09046 -19.18790 -18.04187 -17.66293 -16.80555 -16.35396 -16.32484 -15.38275 -14.65157 -14.59876 -13.72763 -13.64853 -13.04837 -13.00576 -12.73508 -12.51953 -12.21232 -11.91227 -11.83891 -11.22264 -11.02754 -10.23263 -9.46418 -8.46432 -8.39542 -6.34916 -0.03600 0.52983 1.08338 1.41608 1.42513 1.59130 2.13093 2.26321 2.29167 2.77324 3.57645 3.67357 3.99603 4.06222 4.26604 4.64861 4.82268 5.00761 5.13116 5.24296 5.34501 5.59236 5.78356 6.20869 6.62878 6.86324 7.00148 7.78546 8.54873 Molecular weight = 222.03amu Principal moments of inertia in cm(-1) A = 0.061359 B = 0.007023 C = 0.006316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 456.219134 B = 3985.893698 C = 4432.254501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.799 5.799 2 C 0.020 3.980 3 Si 0.994 3.006 4 H -0.249 1.249 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.474 4.474 8 H 0.095 0.905 9 C 0.194 3.806 10 C -0.252 4.252 11 N -0.352 5.352 12 C 0.063 3.937 13 C -0.167 4.167 14 C -0.021 4.021 15 Cl -0.051 7.051 16 C -0.109 4.109 17 C 0.182 3.818 18 N -0.520 5.520 19 H 0.276 0.724 20 H 0.184 0.816 21 H 0.197 0.803 22 H 0.188 0.812 23 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.087 -10.471 -0.037 10.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C -0.197 4.197 3 Si 0.814 3.186 4 H -0.172 1.172 5 H -0.195 1.195 6 H -0.195 1.195 7 C -0.507 4.507 8 H 0.113 0.887 9 C 0.069 3.931 10 C -0.381 4.381 11 N -0.025 5.025 12 C -0.062 4.062 13 C -0.190 4.190 14 C -0.053 4.053 15 Cl -0.022 7.022 16 C -0.132 4.132 17 C -0.059 4.059 18 N -0.246 5.246 19 H 0.086 0.914 20 H 0.201 0.799 21 H 0.214 0.786 22 H 0.205 0.795 23 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -0.887 -9.723 -0.040 9.763 hybrid contribution 0.515 0.215 0.000 0.558 sum -0.371 -9.508 -0.039 9.515 Atomic orbital electron populations 1.70237 1.08937 1.29004 1.34201 1.26961 0.95730 1.04797 0.92236 0.84986 0.79408 0.75732 0.78427 1.17249 1.19484 1.19490 1.19153 0.94509 0.89032 1.48042 0.88744 1.19072 0.87993 0.93053 0.93019 1.22940 0.92479 0.88225 1.34411 1.42785 1.08377 1.06430 1.44902 1.22176 1.01828 0.80497 1.01718 1.20690 0.87956 1.02056 1.08269 1.20434 0.88368 0.90898 1.05597 1.98332 1.30252 1.76658 1.96949 1.19908 0.94649 0.92853 1.05827 1.21670 0.87902 0.88837 1.07484 1.71569 1.15670 1.11020 1.26367 0.91359 0.79850 0.78606 0.79502 0.84203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -46.46 11.93 21.79 0.26 -46.20 14 2 C 0.02 1.06 5.49 85.17 0.47 1.53 14 3 Si 0.99 40.07 29.56 68.60 2.03 42.09 14 4 H -0.25 -9.40 7.11 99.48 0.71 -8.69 14 5 H -0.27 -10.53 7.11 99.48 0.71 -9.82 14 6 H -0.27 -10.53 7.11 99.48 0.71 -9.82 14 7 C -0.47 -26.67 9.37 23.37 0.22 -26.45 14 8 H 0.09 4.86 7.84 -2.91 -0.02 4.84 14 9 C 0.19 11.19 6.66 39.72 0.26 11.46 14 10 C -0.25 -12.18 11.80 84.30 0.99 -11.19 14 11 N -0.35 -15.49 2.93 -348.58 -1.02 -16.51 14 12 C 0.06 1.97 10.92 83.14 0.91 2.88 14 13 C -0.17 -4.59 9.79 22.08 0.22 -4.38 14 14 C -0.02 -0.67 6.33 22.38 0.14 -0.53 14 15 Cl -0.05 -1.34 28.97 -2.72 -0.08 -1.42 14 16 C -0.11 -4.53 9.88 22.47 0.22 -4.31 14 17 C 0.18 9.15 7.77 134.04 1.04 10.19 14 18 N -0.52 -30.96 9.52 -186.60 -1.78 -32.73 14 19 H 0.28 14.60 8.30 -92.71 -0.77 13.83 14 20 H 0.18 7.53 8.06 -2.91 -0.02 7.51 14 21 H 0.20 4.27 8.06 -2.91 -0.02 4.24 14 22 H 0.19 3.43 8.06 -2.91 -0.02 3.40 14 23 H 0.14 5.66 8.06 -2.91 -0.02 5.64 14 Total: -1.00 -69.56 230.62 5.12 -64.44 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: 1.23 Total: 11.13 kcal Atomic # 6 Polarization: -25.27 SS G_CDS: 4.48 Total: -20.80 kcal Atomic # 7 Polarization: -92.90 SS G_CDS: -2.54 Total: -95.44 kcal Atomic # 14 Polarization: 40.07 SS G_CDS: 2.03 Total: 42.09 kcal Atomic # 17 Polarization: -1.34 SS G_CDS: -0.08 Total: -1.42 kcal Total: -69.56 5.12 -64.44 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074376982.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.513 kcal (2) G-P(sol) polarization free energy of solvation -69.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.437 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds