Wall clock time and date at job start Mon Mar 30 2020 03:18:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50694 * 109.47471 * 2 1 4 4 C 1.30811 * 121.81796 * 84.97163 * 3 2 1 5 5 S 1.75738 * 109.94009 * 179.82512 * 4 3 2 6 6 C 1.76378 * 90.74495 * 0.25802 * 5 4 3 7 7 N 1.32280 * 141.21980 * 180.02562 * 6 5 4 8 8 C 1.35574 * 109.04270 * 179.70747 * 7 6 5 9 9 C 1.41152 * 126.32096 * 179.97438 * 8 7 6 10 10 H 1.08002 * 120.00256 * 180.02562 * 9 8 7 11 11 C 1.39680 * 119.99988 * 0.02562 * 9 8 7 12 12 N 1.31030 * 120.00002 * 359.97438 * 11 9 8 13 13 Si 1.86804 * 120.00101 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47058 * 59.99423 * 13 11 9 15 15 H 1.48499 * 109.47090 * 180.02562 * 13 11 9 16 16 H 1.48511 * 109.46761 * 299.99847 * 13 11 9 17 17 C 1.38895 * 107.35695 * 359.97149 * 8 7 6 18 18 N 1.35655 * 109.12213 * 359.74733 * 6 5 4 19 19 H 1.08997 * 109.47029 * 299.99948 * 1 2 3 20 20 H 1.09001 * 109.46999 * 59.99869 * 1 2 3 21 21 H 1.09004 * 109.47250 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.47300 * 239.99130 * 2 1 3 23 23 H 1.09009 * 109.46776 * 119.99898 * 2 1 3 24 24 H 1.08006 * 125.03320 * 0.06231 * 4 3 2 25 25 H 0.97002 * 119.99965 * 180.02562 * 12 11 9 26 26 H 1.08002 * 126.64071 * 180.02562 * 17 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.1705 2.1034 1.1073 5 16 2.7784 3.7125 0.7474 6 6 2.8022 3.3429 -0.9771 7 7 3.1030 3.8876 -2.1444 8 6 2.8747 2.9820 -3.1271 9 6 3.0730 3.1813 -4.5103 10 1 2.8564 2.3852 -5.2072 11 6 3.5496 4.4083 -4.9778 12 7 3.8119 5.3744 -4.1324 13 14 3.8114 4.6723 -6.8085 14 1 2.5228 4.4916 -7.5240 15 1 4.3196 6.0479 -7.0425 16 1 4.8008 3.6869 -7.3142 17 6 2.4096 1.8218 -2.5215 18 7 2.3703 2.0707 -1.1649 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3634 -1.0277 0.0005 22 1 1.8934 -0.5139 -0.8899 23 1 1.8933 -0.5139 0.8901 24 1 1.9478 1.7318 2.0966 25 1 4.1425 6.2265 -4.4572 26 1 2.1319 0.9030 -3.0166 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075395734.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:23 Heat of formation + Delta-G solvation = 79.459996 kcal Electronic energy + Delta-G solvation = -12605.006791 eV Core-core repulsion = 10390.311529 eV Total energy + Delta-G solvation = -2214.695262 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 222.052 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.86785 -36.32852 -33.36579 -31.77153 -29.23845 -28.41182 -25.14971 -24.08904 -21.37217 -20.17364 -18.71815 -17.22362 -16.54827 -15.03012 -14.83302 -14.36235 -14.09849 -13.62406 -13.11860 -12.73139 -12.55625 -12.20177 -11.41616 -11.21704 -11.12215 -11.00903 -10.53312 -10.45603 -10.33694 -10.10642 -9.32825 -9.07703 -8.32408 -7.51587 -6.54216 -6.40506 -4.24667 1.89885 1.99058 2.57360 3.11279 3.17794 3.20096 3.47374 3.84031 4.10544 4.37840 4.97691 5.17803 5.38394 5.60986 5.64949 5.79739 5.89536 5.92629 6.08059 6.26908 6.52710 6.91812 7.24099 7.44574 7.62895 8.13907 8.43932 8.88609 9.03019 9.61632 10.52349 Molecular weight = 222.05amu Principal moments of inertia in cm(-1) A = 0.042864 B = 0.008427 C = 0.007199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.066856 B = 3321.731054 C = 3888.247517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.063 4.063 3 C 0.107 3.893 4 C -0.284 4.284 5 S 0.111 5.889 6 C 0.121 3.879 7 N -0.417 5.417 8 C 0.229 3.771 9 C -0.444 4.444 10 H 0.083 0.917 11 C 0.074 3.926 12 N -0.760 5.760 13 Si 0.910 3.090 14 H -0.267 1.267 15 H -0.280 1.280 16 H -0.267 1.267 17 C -0.239 4.239 18 N -0.398 5.398 19 H 0.058 0.942 20 H 0.058 0.942 21 H 0.059 0.941 22 H 0.075 0.925 23 H 0.083 0.917 24 H 0.174 0.826 25 H 0.273 0.727 26 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.613 -6.638 7.199 10.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.103 4.103 3 C -0.008 4.008 4 C -0.423 4.423 5 S 0.359 5.641 6 C -0.244 4.244 7 N -0.144 5.144 8 C 0.105 3.895 9 C -0.478 4.478 10 H 0.102 0.898 11 C -0.147 4.147 12 N -0.384 5.384 13 Si 0.735 3.265 14 H -0.192 1.192 15 H -0.205 1.205 16 H -0.192 1.192 17 C -0.365 4.365 18 N -0.082 5.082 19 H 0.077 0.923 20 H 0.077 0.923 21 H 0.078 0.922 22 H 0.094 0.906 23 H 0.101 0.899 24 H 0.191 0.809 25 H 0.084 0.916 26 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -2.906 -4.510 7.766 9.439 hybrid contribution -0.500 -1.837 -1.501 2.424 sum -3.407 -6.346 6.265 9.546 Atomic orbital electron populations 1.21728 0.94208 1.01646 1.02632 1.20325 0.96470 0.90150 1.03400 1.18876 1.00954 0.96073 0.84880 1.24085 1.18318 0.98943 1.00985 1.83922 1.74677 1.12945 0.92524 1.26295 1.10566 0.86712 1.00831 1.71737 1.20873 1.28500 0.93318 1.18438 0.92394 0.85909 0.92727 1.18518 1.41020 0.98946 0.89287 0.89840 1.25880 0.93762 0.95603 0.99485 1.70087 1.30207 1.02876 1.35256 0.86364 0.79408 0.77935 0.82812 1.19164 1.20482 1.19169 1.22422 1.32017 1.03835 0.78220 1.43161 1.47705 1.11652 1.05644 0.92310 0.92315 0.92198 0.90634 0.89892 0.80907 0.91646 0.83298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 9.89 37.16 0.37 -1.42 15 2 C -0.06 -0.89 6.21 -27.89 -0.17 -1.06 15 3 C 0.11 1.99 6.00 -81.67 -0.49 1.50 15 4 C -0.28 -4.74 10.80 29.07 0.31 -4.43 15 5 S 0.11 2.18 23.37 -107.50 -2.51 -0.33 15 6 C 0.12 3.12 8.89 -88.31 -0.79 2.34 15 7 N -0.42 -12.35 9.57 -10.93 -0.10 -12.46 15 8 C 0.23 6.63 6.67 -84.86 -0.57 6.07 15 9 C -0.44 -12.52 9.37 -37.94 -0.36 -12.88 15 10 H 0.08 2.18 7.84 -52.49 -0.41 1.76 15 11 C 0.07 1.99 5.49 -17.36 -0.10 1.90 15 12 N -0.76 -21.80 11.93 55.53 0.66 -21.13 15 13 Si 0.91 19.70 29.56 -169.99 -5.02 14.68 15 14 H -0.27 -5.65 7.11 56.52 0.40 -5.25 15 15 H -0.28 -5.93 7.11 56.52 0.40 -5.52 15 16 H -0.27 -5.65 7.11 56.52 0.40 -5.25 15 17 C -0.24 -6.11 11.99 -14.54 -0.17 -6.28 15 18 N -0.40 -9.42 3.14 -58.45 -0.18 -9.60 15 19 H 0.06 0.67 8.14 -51.93 -0.42 0.25 15 20 H 0.06 0.85 8.14 -51.93 -0.42 0.42 15 21 H 0.06 0.59 8.14 -51.93 -0.42 0.17 15 22 H 0.07 1.11 8.12 -51.93 -0.42 0.69 15 23 H 0.08 0.93 8.13 -51.92 -0.42 0.51 15 24 H 0.17 2.16 8.06 -52.48 -0.42 1.74 15 25 H 0.27 7.15 8.30 -40.82 -0.34 6.81 15 26 H 0.15 3.40 8.06 -52.49 -0.42 2.98 15 LS Contribution 247.14 15.07 3.72 3.72 Total: -1.00 -32.18 247.14 -7.90 -40.08 By element: Atomic # 1 Polarization: 1.82 SS G_CDS: -2.50 Total: -0.69 kcal Atomic # 6 Polarization: -12.31 SS G_CDS: -1.96 Total: -14.27 kcal Atomic # 7 Polarization: -43.57 SS G_CDS: 0.37 Total: -43.19 kcal Atomic # 14 Polarization: 19.70 SS G_CDS: -5.02 Total: 14.68 kcal Atomic # 16 Polarization: 2.18 SS G_CDS: -2.51 Total: -0.33 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -32.18 -7.90 -40.08 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075395734.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.541 kcal (2) G-P(sol) polarization free energy of solvation -32.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds