Wall clock time and date at job start Mon Mar 30 2020 02:58:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86803 * 119.99776 * 2 1 4 4 H 1.48500 * 109.47229 * 270.00614 * 3 2 1 5 5 H 1.48500 * 109.46876 * 30.00454 * 3 2 1 6 6 H 1.48493 * 109.46859 * 150.00112 * 3 2 1 7 7 C 1.37874 * 119.99835 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99767 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00270 * 359.97438 * 7 2 1 10 10 C 1.50706 * 109.46817 * 180.02562 * 9 7 2 11 11 O 1.21315 * 120.00205 * 359.97438 * 10 9 7 12 12 C 1.46691 * 119.99447 * 180.02562 * 10 9 7 13 13 C 1.40152 * 120.09306 * 359.72407 * 12 10 9 14 14 C 1.36498 * 119.90653 * 179.75880 * 13 12 10 15 15 C 1.39398 * 120.09156 * 0.49874 * 14 13 12 16 16 S 1.76203 * 119.90968 * 179.73895 * 15 14 13 17 17 C 1.39409 * 120.18306 * 359.75653 * 15 14 13 18 18 C 1.36490 * 120.08649 * 0.02562 * 17 15 14 19 19 H 0.96992 * 120.00038 * 359.97438 * 1 2 3 20 20 H 1.09000 * 109.46670 * 60.00337 * 9 7 2 21 21 H 1.09000 * 109.47247 * 300.00051 * 9 7 2 22 22 H 1.07999 * 120.04820 * 359.97438 * 13 12 10 23 23 H 1.08007 * 119.95340 * 180.23462 * 14 13 12 24 24 H 1.41000 * 99.99937 * 270.01665 * 16 15 14 25 25 H 1.07998 * 119.95223 * 179.97438 * 17 15 14 26 26 H 1.08002 * 120.04658 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2305 -3.6446 -0.0005 11 8 3.4232 -3.4228 -0.0010 12 6 1.7415 -5.0276 -0.0011 13 6 0.3640 -5.2859 0.0042 14 6 -0.0869 -6.5742 -0.0013 15 6 0.8207 -7.6323 -0.0017 16 16 0.2334 -9.2936 -0.0019 17 6 2.1917 -7.3797 -0.0016 18 6 2.6507 -6.0943 -0.0006 19 1 -0.4850 0.8400 0.0004 20 1 0.6242 -2.5567 -0.8903 21 1 0.6248 -2.5571 0.8897 22 1 -0.3398 -4.4667 0.0091 23 1 -1.1483 -6.7741 -0.0011 24 1 0.1517 -9.5246 1.3866 25 1 2.8915 -8.2023 -0.0015 26 1 3.7130 -5.8994 -0.0001 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075580219.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:33 Heat of formation + Delta-G solvation = -32.990162 kcal Electronic energy + Delta-G solvation = -12110.059585 eV Core-core repulsion = 9858.195368 eV Total energy + Delta-G solvation = -2251.864218 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 222.046 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.95532 -39.10524 -35.16641 -32.86887 -32.22400 -30.70396 -26.51205 -24.48648 -23.42343 -20.77651 -19.18076 -18.55764 -17.47772 -16.93842 -16.32397 -16.16215 -15.85075 -15.33941 -14.94119 -14.59808 -14.19266 -13.99297 -13.32239 -13.08574 -12.85018 -12.60148 -12.26549 -12.06300 -11.85782 -11.44244 -10.64480 -10.40626 -10.15910 -9.92007 -9.17684 -8.27004 -6.35423 -0.65311 0.35873 0.62609 1.31528 1.39013 1.39341 1.51672 1.77148 2.38598 2.73059 3.08104 3.27690 3.73882 3.91980 4.28021 4.30918 4.56152 4.63439 4.96603 5.07076 5.15938 5.17574 5.25004 5.37713 5.69167 5.70996 6.08964 6.72456 6.80115 7.33623 8.84727 Molecular weight = 222.05amu Principal moments of inertia in cm(-1) A = 0.069842 B = 0.005554 C = 0.005166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 400.809643 B = 5039.774775 C = 5419.101521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.012 3.988 3 Si 0.961 3.039 4 H -0.271 1.271 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.548 4.548 8 H 0.055 0.945 9 C -0.020 4.020 10 C 0.392 3.608 11 O -0.490 6.490 12 C -0.154 4.154 13 C -0.078 4.078 14 C -0.083 4.083 15 C -0.089 4.089 16 S -0.148 6.148 17 C -0.082 4.082 18 C -0.081 4.081 19 H 0.268 0.732 20 H 0.050 0.950 21 H 0.050 0.950 22 H 0.142 0.858 23 H 0.163 0.837 24 H 0.122 0.878 25 H 0.163 0.837 26 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.475 -16.322 0.835 16.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.187 4.187 3 Si 0.786 3.214 4 H -0.197 1.197 5 H -0.199 1.199 6 H -0.198 1.198 7 C -0.586 4.586 8 H 0.073 0.927 9 C -0.057 4.057 10 C 0.273 3.727 11 O -0.369 6.369 12 C -0.155 4.155 13 C -0.097 4.097 14 C -0.103 4.103 15 C -0.201 4.201 16 S 0.008 5.992 17 C -0.102 4.102 18 C -0.101 4.101 19 H 0.077 0.923 20 H 0.068 0.932 21 H 0.068 0.932 22 H 0.160 0.840 23 H 0.181 0.819 24 H 0.087 0.913 25 H 0.180 0.820 26 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -1.325 -16.979 0.601 17.042 hybrid contribution 0.593 2.012 0.910 2.287 sum -0.732 -14.967 1.512 15.061 Atomic orbital electron populations 1.70020 1.07104 1.28126 1.50902 1.25776 0.95846 1.02710 0.94365 0.85500 0.78541 0.78742 0.78612 1.19654 1.19880 1.19846 1.21442 0.93743 0.91720 1.51661 0.92670 1.19443 0.95256 0.91878 0.99080 1.23259 0.89822 0.90562 0.69078 1.90359 1.20413 1.88114 1.37972 1.21017 0.95754 0.94614 1.04138 1.21465 0.94096 0.98348 0.95835 1.21573 1.01204 0.90754 0.96750 1.21768 0.95807 0.96388 1.06111 1.86996 1.87608 1.10093 1.14514 1.21511 0.94859 0.96845 0.97034 1.21313 1.00324 0.92012 0.96487 0.92338 0.93211 0.93230 0.83976 0.81939 0.91299 0.81981 0.84713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.52 13.29 21.45 0.28 -53.23 15 2 C 0.01 0.69 5.46 84.65 0.46 1.15 15 3 Si 0.96 44.90 29.54 68.60 2.03 46.93 15 4 H -0.27 -12.25 7.11 99.48 0.71 -11.54 15 5 H -0.27 -12.17 7.11 99.48 0.71 -11.46 15 6 H -0.27 -12.75 7.11 99.48 0.71 -12.04 15 7 C -0.55 -32.03 8.92 25.60 0.23 -31.80 15 8 H 0.06 3.35 6.75 -2.91 -0.02 3.33 15 9 C -0.02 -1.01 4.06 29.10 0.12 -0.90 15 10 C 0.39 17.81 7.09 27.90 0.20 18.01 15 11 O -0.49 -24.87 15.44 -3.14 -0.05 -24.92 15 12 C -0.15 -5.42 5.87 -20.14 -0.12 -5.54 15 13 C -0.08 -2.31 9.41 22.33 0.21 -2.10 15 14 C -0.08 -1.96 9.73 22.14 0.22 -1.74 15 15 C -0.09 -2.00 6.14 22.83 0.14 -1.86 15 16 S -0.15 -2.67 25.79 -56.49 -1.46 -4.13 15 17 C -0.08 -1.92 9.73 22.14 0.22 -1.70 15 18 C -0.08 -2.42 9.54 22.33 0.21 -2.21 15 19 H 0.27 14.56 8.31 -92.71 -0.77 13.79 15 20 H 0.05 2.57 8.09 -2.39 -0.02 2.55 15 21 H 0.05 2.55 8.07 -2.39 -0.02 2.53 15 22 H 0.14 4.26 7.03 -2.91 -0.02 4.24 15 23 H 0.16 2.96 8.06 -2.91 -0.02 2.93 15 24 H 0.12 1.78 9.55 73.80 0.70 2.48 15 25 H 0.16 2.82 8.06 -2.91 -0.02 2.80 15 26 H 0.14 4.00 7.64 -2.91 -0.02 3.98 15 Total: -1.00 -65.04 252.89 4.60 -60.45 By element: Atomic # 1 Polarization: 1.70 SS G_CDS: 1.91 Total: 3.61 kcal Atomic # 6 Polarization: -30.58 SS G_CDS: 1.88 Total: -28.70 kcal Atomic # 7 Polarization: -53.52 SS G_CDS: 0.28 Total: -53.23 kcal Atomic # 8 Polarization: -24.87 SS G_CDS: -0.05 Total: -24.92 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Atomic # 16 Polarization: -2.67 SS G_CDS: -1.46 Total: -4.13 kcal Total: -65.04 4.60 -60.45 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075580219.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.455 kcal (2) G-P(sol) polarization free energy of solvation -65.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds