Wall clock time and date at job start Mon Mar 30 2020 02:49:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31397 * 1 3 3 Si 1.86801 * 119.99878 * 2 1 4 4 H 1.48503 * 109.47144 * 269.99829 * 3 2 1 5 5 H 1.48498 * 109.47034 * 30.00367 * 3 2 1 6 6 H 1.48507 * 109.46669 * 149.99993 * 3 2 1 7 7 C 1.38894 * 119.99854 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99921 * 160.08825 * 7 2 1 9 9 N 1.37332 * 120.00122 * 340.08578 * 7 2 1 10 10 C 1.36640 * 126.40442 * 146.25423 * 9 7 2 11 11 Cl 1.73602 * 124.99621 * 0.03255 * 10 9 7 12 12 N 1.30230 * 110.00142 * 180.02562 * 10 9 7 13 13 C 1.35935 * 109.72602 * 0.02562 * 12 10 9 14 14 C 1.39667 * 133.47124 * 179.97438 * 13 12 10 15 15 C 1.37726 * 119.78210 * 180.02562 * 14 13 12 16 16 C 1.38708 * 120.51341 * 359.97438 * 15 14 13 17 17 C 1.37981 * 120.43011 * 0.02814 * 16 15 14 18 18 C 1.38465 * 126.40283 * 326.29814 * 9 7 2 19 19 H 0.96994 * 119.99921 * 0.02562 * 1 2 3 20 20 H 1.08005 * 120.10605 * 0.28113 * 14 13 12 21 21 H 1.08003 * 119.74790 * 180.02562 * 15 14 13 22 22 H 1.07998 * 119.78680 * 180.02562 * 16 15 14 23 23 H 1.08005 * 120.08110 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2479 1.6178 0.0000 4 1 2.4955 2.0464 -1.4001 5 1 1.4454 2.6526 0.7001 6 1 3.5455 1.4401 0.7001 7 6 2.0084 -1.2029 -0.0005 8 1 3.0400 -1.2307 -0.3191 9 7 1.3833 -2.3568 0.4040 10 6 1.6023 -3.6128 -0.0874 11 17 2.7347 -4.0074 -1.3428 12 7 0.8366 -4.4703 0.5245 13 6 0.0744 -3.8273 1.4483 14 6 -0.8939 -4.2537 2.3600 15 6 -1.5065 -3.3374 3.1859 16 6 -1.1688 -1.9937 3.1199 17 6 -0.2143 -1.5560 2.2248 18 6 0.4128 -2.4649 1.3857 19 1 -0.4850 0.8400 -0.0004 20 1 -1.1586 -5.2991 2.4200 21 1 -2.2549 -3.6678 3.8909 22 1 -1.6563 -1.2853 3.7734 23 1 0.0440 -0.5084 2.1780 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075580416.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:54 Heat of formation + Delta-G solvation = 61.074422 kcal Electronic energy + Delta-G solvation = -12674.508032 eV Core-core repulsion = 10321.138711 eV Total energy + Delta-G solvation = -2353.369321 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 222.025 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.81213 -36.42798 -35.70948 -34.29190 -31.38300 -29.25979 -28.04549 -25.36238 -22.07781 -21.27008 -20.04184 -18.03311 -16.38146 -15.57975 -15.08076 -14.76150 -14.27982 -13.18358 -13.09423 -12.93743 -12.12013 -11.55397 -11.49791 -11.39172 -11.12352 -10.79974 -10.64486 -10.39546 -10.26642 -9.66153 -9.00153 -8.86981 -7.36945 -7.07633 -6.80810 -4.64368 1.96665 2.35011 2.61785 2.92714 2.97018 3.02690 3.71483 3.82699 4.55037 4.66299 4.96328 5.61361 5.87192 6.00264 6.36023 6.52770 6.59421 6.79984 6.93228 7.07592 7.39843 7.51222 7.66955 7.87171 8.00824 8.45997 8.90428 9.12432 10.08463 Molecular weight = 222.03amu Principal moments of inertia in cm(-1) A = 0.021644 B = 0.015939 C = 0.009535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.331618 B = 1756.258174 C = 2935.895347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.816 5.816 2 C 0.056 3.944 3 Si 0.931 3.069 4 H -0.268 1.268 5 H -0.273 1.273 6 H -0.261 1.261 7 C -0.359 4.359 8 H 0.114 0.886 9 N -0.272 5.272 10 C 0.253 3.747 11 Cl 0.003 6.997 12 N -0.513 5.513 13 C 0.036 3.964 14 C -0.086 4.086 15 C -0.139 4.139 16 C -0.154 4.154 17 C -0.039 4.039 18 C 0.051 3.949 19 H 0.284 0.716 20 H 0.112 0.888 21 H 0.111 0.889 22 H 0.111 0.889 23 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.858 0.212 2.346 2.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C -0.158 4.158 3 Si 0.754 3.246 4 H -0.193 1.193 5 H -0.198 1.198 6 H -0.185 1.185 7 C -0.487 4.487 8 H 0.132 0.868 9 N 0.055 4.945 10 C -0.033 4.033 11 Cl 0.030 6.970 12 N -0.240 5.240 13 C -0.088 4.088 14 C -0.106 4.106 15 C -0.160 4.160 16 C -0.175 4.175 17 C -0.059 4.059 18 C -0.064 4.064 19 H 0.094 0.906 20 H 0.130 0.870 21 H 0.129 0.871 22 H 0.129 0.871 23 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 0.877 -0.406 1.945 2.172 hybrid contribution 0.460 1.660 -0.279 1.745 sum 1.337 1.254 1.666 2.477 Atomic orbital electron populations 1.70060 1.06566 1.29595 1.38239 1.25606 0.95404 1.00765 0.93999 0.85864 0.79916 0.79434 0.79340 1.19341 1.19803 1.18453 1.19786 0.97386 0.83033 1.48489 0.86842 1.41153 1.26214 1.05445 1.21697 1.23156 0.99105 0.83695 0.97330 1.98306 1.57503 1.93135 1.48023 1.70062 1.10577 1.31283 1.12044 1.18739 1.00554 0.90043 0.99436 1.19880 0.96377 0.98697 0.95662 1.20539 1.01488 0.93282 1.00684 1.20614 1.00211 0.95482 1.01174 1.20047 0.94819 0.98216 0.92856 1.18548 0.97842 0.95348 0.94709 0.90560 0.86995 0.87069 0.87131 0.86349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -20.62 10.58 55.49 0.59 -20.03 14 2 C 0.06 1.35 4.54 -17.49 -0.08 1.27 14 3 Si 0.93 18.14 29.60 -169.99 -5.03 13.11 14 4 H -0.27 -5.17 7.11 56.52 0.40 -4.76 14 5 H -0.27 -5.21 7.11 56.52 0.40 -4.81 14 6 H -0.26 -5.01 7.11 56.52 0.40 -4.61 14 7 C -0.36 -9.11 9.63 -14.84 -0.14 -9.25 14 8 H 0.11 2.73 7.91 -52.48 -0.41 2.31 14 9 N -0.27 -7.19 2.86 -57.63 -0.17 -7.35 14 10 C 0.25 6.38 8.43 -89.12 -0.75 5.63 14 11 Cl 0.00 0.06 28.96 -51.86 -1.50 -1.44 14 12 N -0.51 -13.20 11.28 -9.00 -0.10 -13.30 14 13 C 0.04 0.91 7.22 -84.65 -0.61 0.30 14 14 C -0.09 -1.83 10.10 -39.24 -0.40 -2.22 14 15 C -0.14 -2.64 10.02 -39.59 -0.40 -3.04 14 16 C -0.15 -3.07 10.03 -39.50 -0.40 -3.47 14 17 C -0.04 -0.92 8.56 -39.51 -0.34 -1.26 14 18 C 0.05 1.31 6.16 -83.84 -0.52 0.80 14 19 H 0.28 6.58 8.31 -40.82 -0.34 6.24 14 20 H 0.11 2.10 8.06 -52.48 -0.42 1.67 14 21 H 0.11 1.69 8.06 -52.48 -0.42 1.27 14 22 H 0.11 1.85 8.06 -52.49 -0.42 1.43 14 23 H 0.12 2.81 6.25 -52.48 -0.33 2.48 14 LS Contribution 225.91 15.07 3.40 3.40 Total: -1.00 -28.05 225.91 -7.58 -35.63 By element: Atomic # 1 Polarization: 2.37 SS G_CDS: -1.15 Total: 1.22 kcal Atomic # 6 Polarization: -7.61 SS G_CDS: -3.63 Total: -11.24 kcal Atomic # 7 Polarization: -41.01 SS G_CDS: 0.32 Total: -40.69 kcal Atomic # 14 Polarization: 18.14 SS G_CDS: -5.03 Total: 13.11 kcal Atomic # 17 Polarization: 0.06 SS G_CDS: -1.50 Total: -1.44 kcal Total LS contribution 3.40 Total: 3.40 kcal Total: -28.05 -7.58 -35.63 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075580416.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.705 kcal (2) G-P(sol) polarization free energy of solvation -28.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.630 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds