Wall clock time and date at job start Mon Mar 30 2020 02:49:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31397 * 1 3 3 Si 1.86801 * 119.99878 * 2 1 4 4 H 1.48503 * 109.47144 * 269.99829 * 3 2 1 5 5 H 1.48498 * 109.47034 * 30.00367 * 3 2 1 6 6 H 1.48507 * 109.46669 * 149.99993 * 3 2 1 7 7 C 1.38894 * 119.99854 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99921 * 160.08825 * 7 2 1 9 9 N 1.37332 * 120.00122 * 340.08578 * 7 2 1 10 10 C 1.36640 * 126.40442 * 146.25423 * 9 7 2 11 11 Cl 1.73602 * 124.99621 * 0.03255 * 10 9 7 12 12 N 1.30230 * 110.00142 * 180.02562 * 10 9 7 13 13 C 1.35935 * 109.72602 * 0.02562 * 12 10 9 14 14 C 1.39667 * 133.47124 * 179.97438 * 13 12 10 15 15 C 1.37726 * 119.78210 * 180.02562 * 14 13 12 16 16 C 1.38708 * 120.51341 * 359.97438 * 15 14 13 17 17 C 1.37981 * 120.43011 * 0.02814 * 16 15 14 18 18 C 1.38465 * 126.40283 * 326.29814 * 9 7 2 19 19 H 0.96994 * 119.99921 * 0.02562 * 1 2 3 20 20 H 1.08005 * 120.10605 * 0.28113 * 14 13 12 21 21 H 1.08003 * 119.74790 * 180.02562 * 15 14 13 22 22 H 1.07998 * 119.78680 * 180.02562 * 16 15 14 23 23 H 1.08005 * 120.08110 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2479 1.6178 0.0000 4 1 2.4955 2.0464 -1.4001 5 1 1.4454 2.6526 0.7001 6 1 3.5455 1.4401 0.7001 7 6 2.0084 -1.2029 -0.0005 8 1 3.0400 -1.2307 -0.3191 9 7 1.3833 -2.3568 0.4040 10 6 1.6023 -3.6128 -0.0874 11 17 2.7347 -4.0074 -1.3428 12 7 0.8366 -4.4703 0.5245 13 6 0.0744 -3.8273 1.4483 14 6 -0.8939 -4.2537 2.3600 15 6 -1.5065 -3.3374 3.1859 16 6 -1.1688 -1.9937 3.1199 17 6 -0.2143 -1.5560 2.2248 18 6 0.4128 -2.4649 1.3857 19 1 -0.4850 0.8400 -0.0004 20 1 -1.1586 -5.2991 2.4200 21 1 -2.2549 -3.6678 3.8909 22 1 -1.6563 -1.2853 3.7734 23 1 0.0440 -0.5084 2.1780 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075580416.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:54 Heat of formation + Delta-G solvation = 45.786700 kcal Electronic energy + Delta-G solvation = -12675.170957 eV Core-core repulsion = 10321.138711 eV Total energy + Delta-G solvation = -2354.032246 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 222.025 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.61094 -38.13340 -37.42532 -36.11065 -33.22562 -30.95688 -29.78105 -27.21613 -23.81444 -23.01896 -21.85716 -19.82491 -18.13850 -17.39858 -16.75573 -16.44874 -16.06259 -14.87761 -14.78562 -14.66530 -13.82096 -13.30176 -13.21467 -12.99542 -12.78082 -12.34488 -12.27190 -12.06739 -11.93161 -11.45104 -10.81036 -10.70283 -9.13761 -8.84453 -8.58570 -6.54022 0.22975 0.56017 0.94568 1.36100 1.40039 1.52575 1.98288 2.11687 2.74242 2.86977 3.23040 3.90136 4.33080 4.42628 4.75082 4.78034 4.86961 5.10080 5.16404 5.36441 5.73695 5.83370 5.92345 6.13010 6.26862 6.62395 7.05989 7.28001 8.30593 Molecular weight = 222.03amu Principal moments of inertia in cm(-1) A = 0.021644 B = 0.015939 C = 0.009535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.331618 B = 1756.258174 C = 2935.895347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.847 5.847 2 C 0.021 3.979 3 Si 1.003 2.997 4 H -0.262 1.262 5 H -0.265 1.265 6 H -0.257 1.257 7 C -0.389 4.389 8 H 0.116 0.884 9 N -0.288 5.288 10 C 0.228 3.772 11 Cl 0.029 6.971 12 N -0.531 5.531 13 C 0.005 3.995 14 C -0.096 4.096 15 C -0.122 4.122 16 C -0.138 4.138 17 C -0.068 4.068 18 C 0.019 3.981 19 H 0.289 0.711 20 H 0.136 0.864 21 H 0.162 0.838 22 H 0.149 0.851 23 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.086 0.887 3.561 3.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C -0.190 4.190 3 Si 0.822 3.178 4 H -0.187 1.187 5 H -0.189 1.189 6 H -0.181 1.181 7 C -0.516 4.516 8 H 0.133 0.867 9 N 0.037 4.963 10 C -0.058 4.058 11 Cl 0.057 6.943 12 N -0.259 5.259 13 C -0.118 4.118 14 C -0.116 4.116 15 C -0.142 4.142 16 C -0.159 4.159 17 C -0.089 4.089 18 C -0.096 4.096 19 H 0.100 0.900 20 H 0.153 0.847 21 H 0.180 0.820 22 H 0.167 0.833 23 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 0.098 0.249 3.161 3.173 hybrid contribution 0.619 1.382 -0.607 1.631 sum 0.717 1.631 2.555 3.115 Atomic orbital electron populations 1.70136 1.08064 1.30735 1.38683 1.26546 0.96098 1.03602 0.92744 0.84824 0.78563 0.74859 0.79554 1.18678 1.18887 1.18103 1.20143 0.97848 0.83710 1.49942 0.86659 1.41396 1.26772 1.05830 1.22258 1.23622 1.00004 0.83847 0.98281 1.98290 1.56413 1.92935 1.46694 1.70026 1.11275 1.31782 1.12780 1.19367 1.01849 0.90101 1.00507 1.20336 0.95567 1.00584 0.95108 1.21087 1.00951 0.92254 0.99936 1.21133 0.98125 0.96932 0.99661 1.20198 0.96716 0.97569 0.94373 1.19079 0.98522 0.96444 0.95506 0.90049 0.84665 0.82035 0.83293 0.87472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -43.19 10.58 21.65 0.23 -42.96 14 2 C 0.02 1.01 4.54 84.92 0.39 1.40 14 3 Si 1.00 36.90 29.60 68.60 2.03 38.93 14 4 H -0.26 -9.32 7.11 99.48 0.71 -8.62 14 5 H -0.26 -9.27 7.11 99.48 0.71 -8.56 14 6 H -0.26 -9.23 7.11 99.48 0.71 -8.53 14 7 C -0.39 -20.17 9.63 83.99 0.81 -19.36 14 8 H 0.12 5.68 7.91 -2.91 -0.02 5.66 14 9 N -0.29 -15.64 2.86 -336.25 -0.96 -16.60 14 10 C 0.23 11.79 8.43 179.82 1.52 13.31 14 11 Cl 0.03 1.23 28.96 -2.72 -0.08 1.15 14 12 N -0.53 -27.83 11.28 -182.39 -2.06 -29.89 14 13 C 0.01 0.26 7.22 39.41 0.28 0.54 14 14 C -0.10 -3.89 10.10 22.49 0.23 -3.66 14 15 C -0.12 -4.16 10.02 22.26 0.22 -3.94 14 16 C -0.14 -5.11 10.03 22.32 0.22 -4.89 14 17 C -0.07 -3.17 8.56 22.32 0.19 -2.98 14 18 C 0.02 0.99 6.16 38.76 0.24 1.23 14 19 H 0.29 13.43 8.31 -92.71 -0.77 12.66 14 20 H 0.14 4.72 8.06 -2.91 -0.02 4.70 14 21 H 0.16 3.92 8.06 -2.91 -0.02 3.89 14 22 H 0.15 4.31 8.06 -2.91 -0.02 4.29 14 23 H 0.11 5.13 6.25 -2.91 -0.02 5.11 14 Total: -1.00 -61.61 225.91 4.50 -57.11 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: 1.24 Total: 10.60 kcal Atomic # 6 Polarization: -22.45 SS G_CDS: 4.10 Total: -18.35 kcal Atomic # 7 Polarization: -86.66 SS G_CDS: -2.79 Total: -89.45 kcal Atomic # 14 Polarization: 36.90 SS G_CDS: 2.03 Total: 38.93 kcal Atomic # 17 Polarization: 1.23 SS G_CDS: -0.08 Total: 1.15 kcal Total: -61.61 4.50 -57.11 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075580416.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.899 kcal (2) G-P(sol) polarization free energy of solvation -61.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.113 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds