Wall clock time and date at job start Mon Mar 30 2020 03:08:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31462 * 1 3 3 Si 1.86803 * 119.99578 * 2 1 4 4 H 1.48503 * 109.46963 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47045 * 119.99896 * 3 2 1 6 6 H 1.48503 * 109.47080 * 240.00278 * 3 2 1 7 7 C 1.38817 * 120.00343 * 179.72467 * 2 1 3 8 8 H 1.08005 * 120.00322 * 154.89790 * 7 2 1 9 9 N 1.37269 * 120.00208 * 334.89639 * 7 2 1 10 10 C 1.34632 * 125.80152 * 328.08534 * 9 7 2 11 11 O 1.21647 * 125.15343 * 359.96547 * 10 9 7 12 12 N 1.34641 * 109.69338 * 179.82804 * 10 9 7 13 13 H 0.96996 * 125.82797 * 180.19931 * 12 10 9 14 14 C 1.39307 * 108.34442 * 0.43374 * 12 10 9 15 15 C 1.38606 * 133.32946 * 179.76147 * 14 12 10 16 16 C 1.38343 * 119.83552 * 179.97438 * 15 14 12 17 17 F 1.35102 * 119.88098 * 180.02562 * 16 15 14 18 18 C 1.38685 * 120.24381 * 0.02562 * 16 15 14 19 19 C 1.38057 * 120.26615 * 0.02562 * 18 16 15 20 20 C 1.38755 * 119.87272 * 359.96294 * 19 18 16 21 21 H 0.97008 * 119.99432 * 174.18067 * 1 2 3 22 22 H 1.07998 * 120.08262 * 359.97438 * 15 14 12 23 23 H 1.07997 * 119.86893 * 180.02562 * 18 16 15 24 24 H 1.08000 * 120.06891 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3146 0.0000 0.0000 3 14 2.2485 1.6178 0.0000 4 1 1.2834 2.7465 -0.0006 5 1 3.1022 1.6966 1.2125 6 1 3.1022 1.6966 -1.2126 7 6 2.0088 -1.2021 0.0058 8 1 3.0123 -1.2482 -0.3908 9 7 1.4198 -2.3324 0.5156 10 6 0.5291 -2.3697 1.5245 11 8 0.1178 -1.3993 2.1319 12 7 0.1603 -3.6435 1.7572 13 1 -0.4727 -3.9373 2.4309 14 6 0.8472 -4.4681 0.8690 15 6 0.8635 -5.8386 0.6622 16 6 1.6713 -6.3763 -0.3238 17 9 1.6875 -7.7119 -0.5266 18 6 2.4646 -5.5493 -1.1050 19 6 2.4547 -4.1834 -0.9044 20 6 1.6473 -3.6356 0.0822 21 1 -0.4850 -0.8358 -0.0852 22 1 0.2471 -6.4850 1.2693 23 1 3.0926 -5.9755 -1.8733 24 1 3.0734 -3.5424 -1.5148 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075946267.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:20 Heat of formation + Delta-G solvation = -41.789694 kcal Electronic energy + Delta-G solvation = -14675.865292 eV Core-core repulsion = 11889.699073 eV Total energy + Delta-G solvation = -2786.166219 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 222.055 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -49.74436 -43.29492 -39.05818 -36.63221 -36.39803 -33.69963 -31.11337 -29.47267 -27.28528 -23.85194 -23.31240 -23.06510 -19.89622 -19.16106 -18.85945 -17.58522 -17.30132 -16.56124 -16.34409 -16.23899 -15.76302 -15.53820 -15.04194 -14.16606 -14.03715 -13.84700 -13.65364 -12.84659 -12.28445 -12.15228 -12.00165 -11.89423 -11.48524 -11.35115 -10.54787 -9.52271 -9.03973 -8.68380 -6.34322 0.12821 0.32506 1.47600 1.59947 1.73578 1.80620 2.14332 2.41436 2.60652 2.76917 3.07232 3.45255 3.63176 4.09691 4.27311 4.36003 4.52318 4.85985 5.03575 5.16451 5.30534 5.55834 5.82058 5.87698 5.94488 6.48098 6.71438 7.10543 7.71616 8.36086 Molecular weight = 222.05amu Principal moments of inertia in cm(-1) A = 0.048041 B = 0.009091 C = 0.007915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.691291 B = 3079.286543 C = 3536.752998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.850 5.850 2 C -0.019 4.019 3 Si 1.131 2.869 4 H -0.284 1.284 5 H -0.276 1.276 6 H -0.244 1.244 7 C -0.454 4.454 8 H 0.109 0.891 9 N -0.380 5.380 10 C 0.605 3.395 11 O -0.603 6.603 12 N -0.631 5.631 13 H 0.437 0.563 14 C 0.075 3.925 15 C -0.128 4.128 16 C 0.081 3.919 17 F -0.137 7.137 18 C -0.129 4.129 19 C -0.083 4.083 20 C 0.046 3.954 21 H 0.256 0.744 22 H 0.163 0.837 23 H 0.172 0.828 24 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.853 -11.172 -2.404 12.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.478 5.478 2 C -0.227 4.227 3 Si 0.949 3.051 4 H -0.210 1.210 5 H -0.202 1.202 6 H -0.168 1.168 7 C -0.579 4.579 8 H 0.126 0.874 9 N -0.085 5.085 10 C 0.309 3.691 11 O -0.484 6.484 12 N -0.277 5.277 13 H 0.279 0.721 14 C -0.030 4.030 15 C -0.151 4.151 16 C 0.060 3.940 17 F -0.115 7.115 18 C -0.149 4.149 19 C -0.105 4.105 20 C -0.060 4.060 21 H 0.066 0.934 22 H 0.180 0.820 23 H 0.189 0.811 24 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 4.406 -8.727 -1.990 9.976 hybrid contribution -0.602 -1.901 0.511 2.058 sum 3.804 -10.628 -1.479 11.384 Atomic orbital electron populations 1.70686 1.08729 1.30428 1.37968 1.28123 0.95859 1.06504 0.92203 0.82786 0.74118 0.69554 0.78657 1.20961 1.20173 1.16753 1.20444 1.01845 0.87022 1.48595 0.87386 1.41084 1.36161 1.05408 1.25896 1.16581 0.85554 0.83373 0.83598 1.90915 1.63730 1.37250 1.56485 1.42760 1.43648 1.05274 1.35999 0.72080 1.17809 0.97795 0.92349 0.95006 1.19876 1.03385 0.90506 1.01285 1.16973 1.00911 0.77369 0.98787 1.91477 1.95711 1.29898 1.94450 1.20988 1.01152 0.91226 1.01560 1.20057 0.99007 0.94929 0.96470 1.19072 1.02023 0.84747 1.00122 0.93445 0.81961 0.81069 0.83996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -52.95 12.14 21.64 0.26 -52.69 14 2 C -0.02 -1.07 4.69 84.89 0.40 -0.67 14 3 Si 1.13 48.64 29.99 68.60 2.06 50.70 14 4 H -0.28 -12.44 7.11 99.48 0.71 -11.74 14 5 H -0.28 -11.53 7.11 99.48 0.71 -10.82 14 6 H -0.24 -8.91 7.11 99.48 0.71 -8.20 14 7 C -0.45 -25.03 9.76 83.98 0.82 -24.21 14 8 H 0.11 5.48 7.95 -2.91 -0.02 5.46 14 9 N -0.38 -20.11 2.68 -474.56 -1.27 -21.38 14 10 C 0.61 32.69 7.53 179.14 1.35 34.04 14 11 O -0.60 -37.66 15.41 -4.18 -0.06 -37.72 14 12 N -0.63 -26.03 6.15 -317.44 -1.95 -27.98 14 13 H 0.44 14.56 8.96 -92.71 -0.83 13.73 14 14 C 0.08 2.83 7.26 38.40 0.28 3.11 14 15 C -0.13 -3.70 10.04 22.38 0.22 -3.48 14 16 C 0.08 2.20 7.30 22.40 0.16 2.37 14 17 F -0.14 -3.44 17.26 44.97 0.78 -2.66 14 18 C -0.13 -3.43 10.01 22.33 0.22 -3.20 14 19 C -0.08 -2.84 9.98 22.35 0.22 -2.61 14 20 C 0.05 1.99 6.76 38.45 0.26 2.25 14 21 H 0.26 16.64 7.03 -92.70 -0.65 15.99 14 22 H 0.16 3.60 8.06 -2.91 -0.02 3.58 14 23 H 0.17 3.28 8.06 -2.91 -0.02 3.26 14 24 H 0.14 4.53 8.06 -2.91 -0.02 4.51 14 Total: -1.00 -72.65 226.39 4.29 -68.36 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: 0.54 Total: 15.77 kcal Atomic # 6 Polarization: 3.66 SS G_CDS: 3.94 Total: 7.60 kcal Atomic # 7 Polarization: -99.09 SS G_CDS: -2.96 Total: -102.05 kcal Atomic # 8 Polarization: -37.66 SS G_CDS: -0.06 Total: -37.72 kcal Atomic # 9 Polarization: -3.44 SS G_CDS: 0.78 Total: -2.66 kcal Atomic # 14 Polarization: 48.64 SS G_CDS: 2.06 Total: 50.70 kcal Total: -72.65 4.29 -68.36 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075946267.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.569 kcal (2) G-P(sol) polarization free energy of solvation -72.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds