Wall clock time and date at job start Mon Mar 30 2020 02:50:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31031 * 1 3 3 Si 1.86808 * 120.00217 * 2 1 4 4 H 1.48503 * 109.47047 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47224 * 300.00267 * 3 2 1 6 6 H 1.48499 * 109.46962 * 60.00340 * 3 2 1 7 7 C 1.39867 * 119.99929 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99847 * 179.97438 * 7 2 1 9 9 C 1.39822 * 119.99914 * 359.97438 * 7 2 1 10 10 C 1.40077 * 126.89669 * 359.97438 * 9 7 2 11 11 N 1.32040 * 108.10435 * 179.48640 * 10 9 7 12 12 C 1.33382 * 110.02100 * 0.62561 * 11 10 9 13 13 C 1.40473 * 131.74159 * 179.27376 * 12 11 10 14 14 Cl 1.73596 * 120.29059 * 0.03005 * 13 12 11 15 15 C 1.36690 * 119.41885 * 180.02562 * 13 12 11 16 16 C 1.40134 * 119.68083 * 0.02562 * 15 13 12 17 17 C 1.35345 * 120.14532 * 359.97438 * 16 15 13 18 18 N 1.36268 * 120.59983 * 0.28209 * 17 16 15 19 19 H 0.97001 * 119.99783 * 359.97438 * 1 2 3 20 20 H 1.08001 * 125.94846 * 0.04420 * 10 9 7 21 21 H 1.07998 * 120.16106 * 179.97438 * 15 13 12 22 22 H 1.08002 * 119.92420 * 180.02562 * 16 15 13 23 23 H 1.08002 * 119.69658 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3103 0.0000 0.0000 3 14 2.2444 1.6178 0.0000 4 1 3.7044 1.3463 -0.0006 5 1 1.8857 2.3965 -1.2124 6 1 1.8857 2.3964 1.2125 7 6 2.0096 -1.2113 -0.0005 8 1 3.0897 -1.2113 -0.0010 9 6 1.3105 -2.4222 -0.0005 10 6 -0.0802 -2.5903 0.0005 11 7 -0.3368 -3.8855 -0.0112 12 6 0.8036 -4.5771 -0.0061 13 6 1.0598 -5.9583 -0.0005 14 17 -0.2544 -7.0925 -0.0002 15 6 2.3529 -6.4013 0.0046 16 6 3.4039 -5.4744 0.0047 17 6 3.1396 -4.1471 -0.0007 18 7 1.8538 -3.6958 -0.0005 19 1 -0.4850 0.8401 0.0004 20 1 -0.8146 -1.7985 0.0007 21 1 2.5636 -7.4605 0.0093 22 1 4.4271 -5.8201 0.0083 23 1 3.9552 -3.4391 -0.0001 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082695724.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:18 Heat of formation + Delta-G solvation = 49.020899 kcal Electronic energy + Delta-G solvation = -12420.362868 eV Core-core repulsion = 10066.470868 eV Total energy + Delta-G solvation = -2353.892001 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 222.025 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.80813 -38.10459 -37.22885 -35.66266 -33.83021 -30.66772 -30.19521 -26.99869 -24.07880 -23.01558 -22.28451 -19.55786 -17.85970 -17.52653 -16.57121 -16.45273 -16.32070 -15.63070 -14.81540 -14.09856 -13.51939 -13.47923 -13.26023 -12.96729 -12.89789 -12.45187 -12.33625 -11.95233 -11.80018 -11.47151 -10.95847 -10.50725 -9.32855 -8.81641 -8.68282 -6.26870 0.01665 0.69375 1.13883 1.41978 1.47183 1.58910 2.13821 2.27364 2.43204 2.87326 3.22400 3.75041 3.97200 4.28918 4.36996 4.86024 4.94845 5.17007 5.20690 5.27500 5.47476 5.62105 5.99695 6.28039 6.54137 6.74463 6.89996 7.57252 8.30010 Molecular weight = 222.03amu Principal moments of inertia in cm(-1) A = 0.051071 B = 0.008505 C = 0.007310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.123823 B = 3291.329256 C = 3829.605022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C 0.026 3.974 3 Si 1.013 2.987 4 H -0.252 1.252 5 H -0.266 1.266 6 H -0.266 1.266 7 C -0.454 4.454 8 H 0.091 0.909 9 C 0.137 3.863 10 C -0.108 4.108 11 N -0.496 5.496 12 C 0.081 3.919 13 C -0.004 4.004 14 Cl -0.057 7.057 15 C -0.119 4.119 16 C -0.159 4.159 17 C 0.060 3.940 18 N -0.412 5.412 19 H 0.293 0.707 20 H 0.185 0.815 21 H 0.171 0.829 22 H 0.193 0.807 23 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.215 -4.724 0.035 9.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.189 4.189 3 Si 0.832 3.168 4 H -0.175 1.175 5 H -0.190 1.190 6 H -0.190 1.190 7 C -0.488 4.488 8 H 0.110 0.890 9 C 0.026 3.974 10 C -0.261 4.261 11 N -0.216 5.216 12 C -0.156 4.156 13 C -0.033 4.033 14 Cl -0.028 7.028 15 C -0.143 4.143 16 C -0.181 4.181 17 C -0.061 4.061 18 N -0.093 5.093 19 H 0.104 0.896 20 H 0.201 0.799 21 H 0.188 0.812 22 H 0.210 0.790 23 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 7.059 -5.012 0.026 8.658 hybrid contribution 0.339 0.998 -0.002 1.054 sum 7.398 -4.014 0.024 8.417 Atomic orbital electron populations 1.69685 1.09098 1.30730 1.35941 1.26845 0.95809 1.04625 0.91598 0.84684 0.78868 0.74377 0.78872 1.17470 1.19047 1.19024 1.18808 0.95122 0.88414 1.46415 0.89050 1.19518 0.93100 0.82735 1.02010 1.23695 0.94634 0.91516 1.16263 1.69861 1.26057 1.06330 1.19326 1.20038 0.84105 0.91394 1.20084 1.19730 0.90344 0.85451 1.07760 1.98294 1.49466 1.58187 1.96888 1.21121 0.88521 1.02118 1.02508 1.20923 1.01333 0.89404 1.06448 1.22146 0.85118 0.98036 1.00771 1.42683 1.06304 1.07266 1.53093 0.89597 0.79906 0.81205 0.79034 0.81194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -42.09 10.31 21.83 0.23 -41.86 14 2 C 0.03 1.23 5.50 85.21 0.47 1.70 14 3 Si 1.01 35.65 29.56 68.60 2.03 37.67 14 4 H -0.25 -8.34 7.11 99.48 0.71 -7.63 14 5 H -0.27 -9.06 7.11 99.48 0.71 -8.35 14 6 H -0.27 -9.04 7.11 99.48 0.71 -8.34 14 7 C -0.45 -23.16 9.26 23.05 0.21 -22.95 14 8 H 0.09 4.23 7.81 -2.91 -0.02 4.21 14 9 C 0.14 7.53 6.80 38.92 0.26 7.80 14 10 C -0.11 -6.36 10.84 85.11 0.92 -5.44 14 11 N -0.50 -28.40 11.23 -191.31 -2.15 -30.55 14 12 C 0.08 4.13 7.59 133.73 1.01 5.14 14 13 C 0.00 -0.15 6.34 22.45 0.14 0.00 14 14 Cl -0.06 -2.12 28.98 -2.72 -0.08 -2.20 14 15 C -0.12 -3.79 9.86 22.37 0.22 -3.57 14 16 C -0.16 -4.62 10.00 22.06 0.22 -4.40 14 17 C 0.06 2.24 10.84 83.34 0.90 3.15 14 18 N -0.41 -20.30 2.98 -343.74 -1.03 -21.32 14 19 H 0.29 13.29 8.30 -92.71 -0.77 12.52 14 20 H 0.18 11.01 5.73 -2.91 -0.02 11.00 14 21 H 0.17 3.96 8.06 -2.91 -0.02 3.94 14 22 H 0.19 3.48 8.06 -2.91 -0.02 3.45 14 23 H 0.17 5.35 8.02 -2.91 -0.02 5.32 14 Total: -1.00 -65.32 227.37 4.61 -60.71 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: 1.24 Total: 16.12 kcal Atomic # 6 Polarization: -22.94 SS G_CDS: 4.37 Total: -18.57 kcal Atomic # 7 Polarization: -90.79 SS G_CDS: -2.95 Total: -93.74 kcal Atomic # 14 Polarization: 35.65 SS G_CDS: 2.03 Total: 37.67 kcal Atomic # 17 Polarization: -2.12 SS G_CDS: -0.08 Total: -2.20 kcal Total: -65.32 4.61 -60.71 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082695724.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.730 kcal (2) G-P(sol) polarization free energy of solvation -65.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.709 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds